|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1152 fasta sequence
[TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGCATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT]
[+] EMBL CF321166 [TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGCATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGG ]
[+] EMBL D43077 [ GCCTTCTTTTCATCTTTTTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTTACCATATATTTTTTAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGT ]
[-] EMBL CF321165 [ TGAGAACTAAGTTAGAATGAGACTACTTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT]
consensusID : consensus_10278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1032 fasta sequence
[TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGGTGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAAACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAA-TAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTTTTCTACTCCTTCAGTCCA]
[+] EMBL CF330480 [TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGGTGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAAACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATA TA ]
[-] EMBL CF330479 [ TAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAA TAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTTTTCTACTCCTTCAGTCCA]
[-] EMBL CF314257 [ CAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAATTAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTAGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGG ]
consensusID : consensus_10278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[TTCTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG]
[-] EMBL CF309586 [TTCTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10278#0 ------------------------------------------------------------
consensus_10278#1 TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGG 60
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ------------------------------------------------------------
consensus_10278#1 TGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAA 120
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 --------------------------TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTT 34
consensus_10278#1 ACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTT 180
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 TTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTG 94
consensus_10278#1 TTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTG 240
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTC 154
consensus_10278#1 ATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTC 300
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCG 214
consensus_10278#1 ACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCG 360
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 CATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTT 274
consensus_10278#1 CATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTT 420
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 GTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAA 334
consensus_10278#1 GTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAA 480
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGC 394
consensus_10278#1 ACTGTATCAAGCCCT--------------------------------------------- 495
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAG 454
consensus_10278#1 ------------------------------------------------------------
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 TTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATA 514
consensus_10278#1 ------------------------------------------------------------
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 GACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGAT 574
consensus_10278#1 ------------------------------------------------------------
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 TGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCG 634
consensus_10278#1 --------------------------------------TGCTCCAGCGCAAATAAATCCG 517
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 AGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATA 694
consensus_10278#1 AGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAATAATA 577
consensus_10278#2 ------------------------------------------TTCTTTTGTTTTTTTTTT 18
* * * * *
consensus_10278#0 GACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTT 754
consensus_10278#1 GACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTT 637
consensus_10278#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 78
* * * * ** *** *** *** ** **** ** ** ** ** ** *** **
consensus_10278#0 CTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCG 814
consensus_10278#1 CTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCG 697
consensus_10278#2 TTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTA 138
* ** * * ** * * *** ***** * * * ** *
consensus_10278#0 GTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGG 874
consensus_10278#1 GTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGG 757
consensus_10278#2 GAAGTTTGTGGCTAACTATTACAGTAG-AAGCTATAGGATGAGCCAACTCTAATGTTTTG 197
* * * * * * * * * * ** * * * * * * *
consensus_10278#0 AGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTG 934
consensus_10278#1 AGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTG 817
consensus_10278#2 CTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG---------------- 241
* * * * * * * ** *
consensus_10278#0 CCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAA 994
consensus_10278#1 CCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAA 877
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 GGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCA 1054
consensus_10278#1 GGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCA 937
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 ATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGC 1114
consensus_10278#1 ATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGC 997
consensus_10278#2 ------------------------------------------------------------
consensus_10278#0 TTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT 1152
consensus_10278#1 TTGAGCTTGGATGTG--TTTTCTACTCCTTCAGTCCA- 1032
consensus_10278#2 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||