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Oryza sativa
cluster # 10282 cluster # 10282       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10282#0 length = 2016 sequences # 5  
consensus_10282#1 length = 795 sequences # 1  
consensus_10282#2 length = 377 sequences # 1  

consensusID : consensus_10282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2016
fasta sequence
                              [TCACCCACCCCTCGCCGCGCCGCAACCCTCGCCGCGCCGCCATGATGTCCTCCACGGCGCCGCCGGACATGCCCGCCGGCGACGGGGACGGCGACATGGAGACGCTCCCCCTCGCCTCCGACTACGCCTCCGTCGCCTCCACCTTCGATCCCCTCCTCTCCTCCGCCGCCGCCGCCGCCTCGCCGCCCTCCCCAACCATCGCCGCCGCCGCCGCCTTCCCGCTCTCCCCGTCCTCCTCCTCCTCCTTCGTGGACCCGCCCTCCTACGCCGACGTCGCCGCCTCCTCCTCCTCCTCCCCGCGCTCCGCATCCGCCTCCGCCTCCGCCTCCCCGAGATCCGCCGCGTCCGACTACGCCCTCATCGCCGTCTCCGACCCCACGCCCGAGGCCGAGCCCGCCGCCACCTCCCTCGTCCCCGGATCCGCCCCGACCTACATCTCCTACCTCGTCACCAGCGCCCGCCGCGGGGACCACCGCCGCCACGCCGTCCGCCGCCGCTTCCGCGACTTCGTCACCCTCGCCGACCGCCTCGCCGAGGCCTTCCGGGGCCACTTCGTGCCCCCGCGCCCGGACAAGAACACCGTCGAGAGCCAGGTCATGCAGCGCGACGAGTTCGTCGCCCAGCGCCGCGCCGCCCTCGAGAGGTACCTGTGGCGCCTCGCCGAGCACCCCGCGATCGGCCCCAGCGACGAGCTGCGCGTCTTCCTGCAGGCCGAGGGCAAGATGCCGCTGCCGAGCACCACCGATGTCGCTTCGCGGATGCTCGACGGCGCAGCGCGGCTGCCACGGCAGCTGCTCGCCGGCGAGGAGGCCGTGGCTGCGCCGCAGGAGGTGGTGCAGCCAGCCAAGGGCGGTAGGGACCTTCTGCGGATATTTAAGGAGCTGAAGCAATCAGTCGTGTCTGACTGGGGCGGCGTCAGGCCGCCTTTGGTAGAGGAGGATAAGGAGTTCCTAGACAAAAAGCAGAAGCTGCAGGATTGGGAGCAGCAGTTGACTAGCGCATCACAACAGGCTGAAGCACTTGTGAAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTTACAAAATTTGAGACGGAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAGCAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGCAAACTGTCAAATATCTGGACACTCTCCATGAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAG-TTGAAGAG-TTAAGGGAAACAA-TAAGGGCTAC-TGAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACCTAATTCAATTTGTTTTTCATTTATTTAAAGAATATTGGCGTAGTTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCCGTACTGCGCATACGATTGGAGCTGCCTGCCTGCTTGGTTAACTTCTGCAACGTTTGTTCAGCTTAGTCAGCATGGTTTTGTTTCCCTATTAGGATCGGTTTGCAAGTACCTTAAGGTCGCTTGCTAAATTATGAAGCATCTTAAAAGGTCGCTTGCTAAAAAAAAA]

[+] EMBL AK066689             [TCACCCACCCCTCGCCGCGCCGCAACCCTCGCCGCGCCGCCATGATGTCCTCCACGGCGCCGCCGGACATGCCCGCCGGCGACGGGGACGGCGACATGGAGACGCTCCCCCTCGCCTCCGACTACGCCTCCGTCGCCTCCACCTTCGATCCCCTCCTCTCCTCCGCCGCCGCCGCCGCCTCGCCGCCCTCCCCAACCATCGCCGCCGCCGCCGCCTTCCCGCTCTCCCCGTCCTCCTCCTCCTCCTTCGTGGACCCGCCCTCCTACGCCGACGTCGCCGCCTCCTCCTCCTCCTCCCCGCGCTCCGCATCCGCCTCCGCCTCCGCCTCCCCGAGATCCGCCGCGTCCGACTACGCCCTCATCGCCGTCTCCGACCCCACGCCCGAGGCCGAGCCCGCCGCCACCTCCCTCGTCCCCGGATCCGCCCCGACCTACATCTCCTACCTCGTCACCAGCGCCCGCCGCGGGGACCACCGCCGCCACGCCGTCCGCCGCCGCTTCCGCGACTTCGTCACCCTCGCCGACCGCCTCGCCGAGGCCTTCCGGGGCCACTTCGTGCCCCCGCGCCCGGACAAGAACACCGTCGAGAGCCAGGTCATGCAGCGCGACGAGTTCGTCGCCCAGCGCCGCGCCGCCCTCGAGAGGTACCTGTGGCGCCTCGCCGAGCACCCCGCGATCGGCCCCAGCGACGAGCTGCGCGTCTTCCTGCAGGCCGAGGGCAAGATGCCGCTGCCGAGCACCACCGATGTCGCTTCGCGGATGCTCGACGGCGCAGCGCGGCTGCCACGGCAGCTGCTCGCCGGCGAGGAGGCCGTGGCTGCGCCGCAGGAGGTGGTGCAGCCAGCCAAGGGCGGTAGGGACCTTCTGCGGATATTTAAGGAGCTGAAGCAATCAGTCGTGTCTGACTGGGGCGGCGTCAGGCCGCCTTTGGTAGAGGAGGATAAGGAGTTCCTAGACAAAAAGCAGAAGCTGCAGGATTGGGAGCAGCAGTTGACTAGCGCATCACAACAGGCTGAAGCACTTGTGAAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTTACAAAATTTGAGACGGAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAGCAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGCAAACTGTCAAATATCTGGACACTCTCCATGAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAG TTGAAGAG TTAAGGGAAACAA TAAGGGCTAC TGAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACCTAATTCAATTTGTTTTTCATTTATTTAAAGAATATTGGCGTAGTTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCCGTACTGCGCATACGATTGGAGCTGCCTGCCTGCTTGGTTAACTTCTGCAACGTT                                                                                                                ]
[+] EMBL BQ529580             [                                                                                                                                                                  CCGCCGCCGCCGCCGCCTCGCCGCCCTCCCCAACCATCGCCGCCGCCGCCGCCTTCCCGCTCTCCCCGTCCTCCTCCTCCTCCTTCGTGGACCCGCCCTCCTACGCCGACGTCGCCGCCTCCTCCTCCTCCTCCCCGCGCTCCGCATCCGCCTCCGCCTCCGCCTCCCCGAGATCCGCCGCGTCCGACTACGCCCTCATCGCCGTCTCCGACCCCACGCCCGAGGCCGAGCCCGCCGCCACCTCCCTCGTCCCCGGATCCGCCCCGACCTACATCTCCTACCTCGTCACCAGCGCCCGCCGCGGGGACCACCGCCGCCACGCCGTCCGCCGCCGCTTCCGCGACTTCGTCACCCTCGCCGACCGCCTCGCCGAGGCCTTCCGGGGCCACTTCGTGCCCCCGCGCCCGGACAAGAACACCGTCGAGAGCCAGGTCATGCAGCGCGACGAGTTCGTCGCCCAGCGCCGCGCCGCCCTCGAGAGGTACCTGTGGCGCCTCGCCGAGCACCCCGCGATCGGCCCCAGCGACGAGCTGCGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU068680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCGCA GAGGTGGTGCAGCCAGCCAAGGGCGGTAGGGACCTTCTGCGGATATTTAAGGAGCTGAAGCAATCAGTCGTGTCTGACTGGGGCGGCGTCAGGCCGCCTTTGGTAGAGGAGGATAAGGAGTTCCTAGACAAAAAGCAGAAGCTGCAGGATTGGGAGCAGCAGTTGACTAGCGCATCACAACAGGCTGAAGCACTTGTGAAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTTACAAAATTTGAGACGGAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAGCAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGCAAACTGTCAAATATCTGGACACTCTCCATGAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAG TTGAAGAGTTTAAGGGAAACAATTAAGGGCTAC TGAAGATGCTAAATGCTGTTCACTAAGGGAATATGAGAG ATCAAGGAAAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C74692               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGGACACTCTCCATGAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAGTTTGAAGAG TTAAGGGAAACAA TAAGGGCTACTTGAAGATGCTAAATGCTGTGCACTAANGGGATATGAGAG ATCAAGG AAATAATAGAAGTG ACTCCACAGCCTAG CCGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU068679             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       acCGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTA GNTTCGCAAAG TTGAAGAG TTAAGGGAAACAA TAAGGGCTAC TGAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACCTAATTCAATTTGTTTTTCATTTATTTAAAGAATATTGGCGTAGTTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCCGTACTGCGCATACGATTGGAGCTGCCTGCCTGCTTGGTTAACTTCTGCAACGTTTGTTCAGCTTAGTCAGCATGGTTTTGTTTCCCTATTAGGATCGGTTTGCAAGTACCTTAAGGTCGCTTGCTAAATTATGAAGCATCTTAAAAGGTCGCTTGCTAAAAAAAAA]


>consensus_10282#0 TCACCCACCCCTCGCCGCGCCGCAACCCTCGCCGCGCCGCCATGATGTCCTCCACGGCGC CGCCGGACATGCCCGCCGGCGACGGGGACGGCGACATGGAGACGCTCCCCCTCGCCTCCG ACTACGCCTCCGTCGCCTCCACCTTCGATCCCCTCCTCTCCTCCGCCGCCGCCGCCGCCT CGCCGCCCTCCCCAACCATCGCCGCCGCCGCCGCCTTCCCGCTCTCCCCGTCCTCCTCCT CCTCCTTCGTGGACCCGCCCTCCTACGCCGACGTCGCCGCCTCCTCCTCCTCCTCCCCGC GCTCCGCATCCGCCTCCGCCTCCGCCTCCCCGAGATCCGCCGCGTCCGACTACGCCCTCA TCGCCGTCTCCGACCCCACGCCCGAGGCCGAGCCCGCCGCCACCTCCCTCGTCCCCGGAT CCGCCCCGACCTACATCTCCTACCTCGTCACCAGCGCCCGCCGCGGGGACCACCGCCGCC ACGCCGTCCGCCGCCGCTTCCGCGACTTCGTCACCCTCGCCGACCGCCTCGCCGAGGCCT TCCGGGGCCACTTCGTGCCCCCGCGCCCGGACAAGAACACCGTCGAGAGCCAGGTCATGC AGCGCGACGAGTTCGTCGCCCAGCGCCGCGCCGCCCTCGAGAGGTACCTGTGGCGCCTCG CCGAGCACCCCGCGATCGGCCCCAGCGACGAGCTGCGCGTCTTCCTGCAGGCCGAGGGCA AGATGCCGCTGCCGAGCACCACCGATGTCGCTTCGCGGATGCTCGACGGCGCAGCGCGGC TGCCACGGCAGCTGCTCGCCGGCGAGGAGGCCGTGGCTGCGCCGCAGGAGGTGGTGCAGC CAGCCAAGGGCGGTAGGGACCTTCTGCGGATATTTAAGGAGCTGAAGCAATCAGTCGTGT CTGACTGGGGCGGCGTCAGGCCGCCTTTGGTAGAGGAGGATAAGGAGTTCCTAGACAAAA AGCAGAAGCTGCAGGATTGGGAGCAGCAGTTGACTAGCGCATCACAACAGGCTGAAGCAC TTGTGAAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCA AACTTACAAAATTTGAGACGGAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTG ACAGCAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATA CGCAAACTGTCAAATATCTGGACACTCTCCATGAACATCTAGGGATAATGCTGTCTGTCC ATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACC TGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTG GTGATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACTGAAG ATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAAC TCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTA CAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGA CGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGC CCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTG AAGGCCAAAAGTAGAAGAAAGACCTAATTCAATTTGTTTTTCATTTATTTAAAGAATATT GGCGTAGTTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCCGTACTGCGCA TACGATTGGAGCTGCCTGCCTGCTTGGTTAACTTCTGCAACGTTTGTTCAGCTTAGTCAG CATGGTTTTGTTTCCCTATTAGGATCGGTTTGCAAGTACCTTAAGGTCGCTTGCTAAATT ATGAAGCATCTTAAAAGGTCGCTTGCTAAAAAAAAA



consensusID : consensus_10282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence
                              [AAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTTTACANAATTTGAGACGNAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAGCAAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGCAAACTGTCAAATATCTGGACACTCTCCATGNAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGGCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACTGAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACAGACCTAATTCAATTTGTTTTTCATTTATTTAAAAAAAAAAAAAAAAAACTCGA]

[-] EMBL CA757941             [AAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTTTACANAATTTGAGACGNAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAGCAAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGCAAACTGTCAAATATCTGGACACTCTCCATGNAACATCTAGGGATAATGCTGTCTGTCCATACTGCATTTTCTGATCGGGCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGTGATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACTGAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACAGACCTAATTCAATTTGTTTTTCATTTATTTAAAAAAAAAAAAAAAAAACTCGA]


>consensus_10282#1 AAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCAAACTT TACANAATTTGAGACGNAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCTGACAG CAAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAATACGC AAACTGTCAAATATCTGGACACTCTCCATGNAACATCTAGGGATAATGCTGTCTGTCCAT ACTGCATTTTCTGATCGGGCAAGTGCATTATTGACTGTACAAACGCTCATGTCAGACCTG GCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTTGGTGGT GATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACTGAAGAT GCTAAATGCTGTGCACTAAGGGAATATGAGAGAATCAAGGAAAATAATAGAAGTGAACTC AACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATATGTTACA AGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACG AGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCC GTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGATGGTGAA GGCCAAAAGTAGAAGAAAGACAGACCTAATTCAATTTGTTTTTCATTTATTTAAAAAAAA AAAAAAAAAACTCGA



consensusID : consensus_10282#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [GTATCGAAGTCGAGGGGGAGCGTCTCCATGTCCCGTCCCCGTCGCCGCGGGCATGTCCGCGGCCCGTGGAGACATCATGCGGCCGGCGAGGGTTCGGCCGGCGAGGGGTGGGTGAGACGGCGTGCGTGCGCGTCTGTGCTGCGTTCGGTTATTCGGTGGGGTCGGTCACCGCGCGGTAGGGATAGACGATCGCGCGCGCCCACGTGGCCTGTCGTGCGCCTATCGGACAGCGTGGAGTACGCGAGAAGTTAACTAGACTTTCACGATCGGGTTTACCGCCAGGGAGATATTTAACCATTTGCCATATTTAGACGTGGCAATTAACTTTTTGTTACTGGGTACATGTGGACCCACATGTCATTGAGATAGGGGTGGTA]

[+] EMBL BI795674             [GTATCGAAGTCGAGGGGGAGCGTCTCCATGTCCCGTCCCCGTCGCCGCGGGCATGTCCGCGGCCCGTGGAGACATCATGCGGCCGGCGAGGGTTCGGCCGGCGAGGGGTGGGTGAGACGGCGTGCGTGCGCGTCTGTGCTGCGTTCGGTTATTCGGTGGGGTCGGTCACCGCGCGGTAGGGATAGACGATCGCGCGCGCCCACGTGGCCTGTCGTGCGCCTATCGGACAGCGTGGAGTACGCGAGAAGTTAACTAGACTTTCACGATCGGGTTTACCGCCAGGGAGATATTTAACCATTTGCCATATTTAGACGTGGCAATTAACTTTTTGTTACTGGGTACATGTGGACCCACATGTCATTGAGATAGGGGTGGTA]


>consensus_10282#2 GTATCGAAGTCGAGGGGGAGCGTCTCCATGTCCCGTCCCCGTCGCCGCGGGCATGTCCGC GGCCCGTGGAGACATCATGCGGCCGGCGAGGGTTCGGCCGGCGAGGGGTGGGTGAGACGG CGTGCGTGCGCGTCTGTGCTGCGTTCGGTTATTCGGTGGGGTCGGTCACCGCGCGGTAGG GATAGACGATCGCGCGCGCCCACGTGGCCTGTCGTGCGCCTATCGGACAGCGTGGAGTAC GCGAGAAGTTAACTAGACTTTCACGATCGGGTTTACCGCCAGGGAGATATTTAACCATTT GCCATATTTAGACGTGGCAATTAACTTTTTGTTACTGGGTACATGTGGACCCACATGTCA TTGAGATAGGGGTGGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10282#0      TCACCCACCCCTCGCCGCGCCGCAACCCTCGCCGCGCCGCCATGATGTCCTCCACGGCGC 60
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CGCCGGACATGCCCGCCGGCGACGGGGACGGCGACATGGAGACGCTCCCCCTCGCCTCCG 120
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      ACTACGCCTCCGTCGCCTCCACCTTCGATCCCCTCCTCTCCTCCGCCGCCGCCGCCGCCT 180
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CGCCGCCCTCCCCAACCATCGCCGCCGCCGCCGCCTTCCCGCTCTCCCCGTCCTCCTCCT 240
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CCTCCTTCGTGGACCCGCCCTCCTACGCCGACGTCGCCGCCTCCTCCTCCTCCTCCCCGC 300
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      GCTCCGCATCCGCCTCCGCCTCCGCCTCCCCGAGATCCGCCGCGTCCGACTACGCCCTCA 360
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TCGCCGTCTCCGACCCCACGCCCGAGGCCGAGCCCGCCGCCACCTCCCTCGTCCCCGGAT 420
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CCGCCCCGACCTACATCTCCTACCTCGTCACCAGCGCCCGCCGCGGGGACCACCGCCGCC 480
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      ACGCCGTCCGCCGCCGCTTCCGCGACTTCGTCACCCTCGCCGACCGCCTCGCCGAGGCCT 540
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TCCGGGGCCACTTCGTGCCCCCGCGCCCGGACAAGAACACCGTCGAGAGCCAGGTCATGC 600
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      AGCGCGACGAGTTCGTCGCCCAGCGCCGCGCCGCCCTCGAGAGGTACCTGTGGCGCCTCG 660
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CCGAGCACCCCGCGATCGGCCCCAGCGACGAGCTGCGCGTCTTCCTGCAGGCCGAGGGCA 720
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      AGATGCCGCTGCCGAGCACCACCGATGTCGCTTCGCGGATGCTCGACGGCGCAGCGCGGC 780
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TGCCACGGCAGCTGCTCGCCGGCGAGGAGGCCGTGGCTGCGCCGCAGGAGGTGGTGCAGC 840
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CAGCCAAGGGCGGTAGGGACCTTCTGCGGATATTTAAGGAGCTGAAGCAATCAGTCGTGT 900
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      CTGACTGGGGCGGCGTCAGGCCGCCTTTGGTAGAGGAGGATAAGGAGTTCCTAGACAAAA 960
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      AGCAGAAGCTGCAGGATTGGGAGCAGCAGTTGACTAGCGCATCACAACAGGCTGAAGCAC 1020
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TTGTGAAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCA 1080
consensus_10282#1      -----AAGGCTCAGCAAGATATGGGTGAAACAATGGGGGCACTTGGATTGGCATTCATCA 55
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      AACTT-ACAAAATTTGAGACGGAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCT 1139
consensus_10282#1      AACTTTACANAATTTGAGACGNAGGAAGCAATGTATGACTCTCAGAGGATAAGAGCTGCT 115
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      GACAGCAAA-CGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAA 1198
consensus_10282#1      GACAGCAAAACGTATAGCCACTGCAGCTGTCAAAGCTAGCCGAGCATGTCGAGATTTGAA 175
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TACGCAAACTGTCAAATATCTGGACACTCTCCATGAA-CATCTAGGGATAATGCTGTC-T 1256
consensus_10282#1      TACGCAAACTGTCAAATATCTGGACACTCTCCATGNAACATCTAGGGATAATGCTGTC-T 234
consensus_10282#2      ------------------------------GTATCGA-AGTCGAGGGGGAGCGTCTCCAT 29
                                                       **  *   ** ****  *  *    * *

consensus_10282#0      GTCCATACTGCATTTTCTGATCGGTCAAGTGCATTATTGACTGTACAAACGCTCATGTCA 1316
consensus_10282#1      GTCCATACTGCATTTTCTGATCGGGCAAGTGCATTATTGACTGTACAAACGCTCATGTCA 294
consensus_10282#2      GTCCCGTCCCCGTCGCCG---CGGGCATGTCCGCGGC---CCGTGGAGACA-TCATGCGG 82
                       ****   *  * *   *    *** ** ** *        * **  * **  *****   

consensus_10282#0      GACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTT 1376
consensus_10282#1      GACCTGGCATCATTGCAATTGAGGATTGAAAAACTCGAAGCAGCTGCATCAAAAATATTT 354
consensus_10282#2      CCGGCGAGGGTTCGGCCGGCGAGGGGTGGGTGAGACGGCGTGCGTGCG-CGTCTGTGCTG 141
                            *        **    ****  **    *  **  *    ***  *     *  * 

consensus_10282#0      GGTGGTGATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACT 1436
consensus_10282#1      GGTGGTGATAAATCTAGGCTTCGCAAAGTTGAAGAGTTAAGGGAAACAATAAGGGCTACT 414
consensus_10282#2      CGTTCGGTTATTCGGTGGGGTCGGTCA-CCGCGCGGTAGGGATAGACGATCGCGCGCGCC 200
                        **   * **      **  ***   *   *    **   *  * ** **   *    * 

consensus_10282#0      GAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAAT-CAAGGAAAATAATAGAAG 1495
consensus_10282#1      GAAGATGCTAAATGCTGTGCACTAAGGGAATATGAGAGAAT-CAAGGAAAATAATAGAAG 473
consensus_10282#2      CACGTGGCC---TGTCGTGCGCCTATCGGACAGCGTGGAGTACGCGAGAAGTTAACTAGA 257
                        * *  **    **  **** *  *  * * *     ** * *  *  ** * *   *  

consensus_10282#0      TGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATA 1555
consensus_10282#1      TGAACTCAACAGACTAGACCGAGAGAAGAAGGAGGATATGCTTGAGATGATAAAAGGATA 533
consensus_10282#2      CTTTCACGATCGGGTTTACCGCCAGGGAGATATTTAACCATTTGCCATATTTAG-----A 312
                           * * *  *  *  ****  **    *     *     ***  **  * *      *

consensus_10282#0      TGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGA 1615
consensus_10282#1      TGTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGA 593
consensus_10282#2      CGTGGCAA-TTAACTTTTTGTTACTGGGTACAT-GTGGACCCACATGTCATTGAGATAGG 370
                        **  ***   **  *       *** * * ** *****       *  *  *    ** 

consensus_10282#0      GGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACT 1675
consensus_10282#1      GGAGACGAGTGGATACGCCCGAAGATCTGATAACAACATAGCGTGGTAGCATTCACAACT 653
consensus_10282#2      GGTGGTA----------------------------------------------------- 377
                       ** *                                                        

consensus_10282#0      TTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGA 1735
consensus_10282#1      TTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATGTACAATGTGTAACCTAGGA 713
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TGGTGAAGGCCAAAAGTAGAAGAAAGAC----CTAATTCAATTTGTTTTTCATTTATTTA 1791
consensus_10282#1      TGGTGAAGGCCAAAAGTAGAAGAAAGACAGACCTAATTCAATTTGTTTTTCATTTATTTA 773
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      AAGAATATTGGCGTAG-TTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCC 1850
consensus_10282#1      AAAAAAAAAAAAAAAAACTCGA-------------------------------------- 795
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      GTACTGCGCATACGATTGGAGCTGCCTGCCTGCTTGGTTAACTTCTGCAACGTTTGTTCA 1910
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      GCTTAGTCAGCATGGTTTTGTTTCCCTATTAGGATCGGTTTGCAAGTACCTTAAGGTCGC 1970
consensus_10282#1      ------------------------------------------------------------
consensus_10282#2      ------------------------------------------------------------
                                                                                   

consensus_10282#0      TTGCTAAATTATGAAGCATCTTAAAAGGTCGCTTGCTAAAAAAAAA 2016
consensus_10282#1      ----------------------------------------------
consensus_10282#2      ----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)