cluster # 10284

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Oryza sativa
cluster # 10284 cluster # 10284 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10284#0 length = 524 sequences # 3

consensus_10284#1 length = 432 sequences # 3
consensus_10284#2 length = 249 sequences # 1

consensusID : consensus_10284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 524
fasta sequence

                              [CAACCGATAATTTAACTCGAATTATACGTGCGACCCTAGACTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGATAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCATGCGCTCAAGATCCAATACCAGCAACACCCTTGGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCGCCGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGAG]

[+] EMBL CB630205             [CAACCGATAATTTAACTCGAATTATACGTGCGACCCTAGACTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGATAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTAGATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCACGCGCTCAAGATCCAATACCAGCAACACCCTTGGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCGCCGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGA ]
[-] EMBL AK103979             [          TTTAACTCGAATTATACGTGCGACCCTAGACTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGATAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCATGCGCTCAAGATCCAATACCAGCAACACCCTTGGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCGCCGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGAG]
[+] EMBL CB664809             [                                                                                                                                             TAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAAAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAAATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCATGCGCTCAAGATCCAATACCAGCAACACCCTTGGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCGCCGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGA ]




>consensus_10284#0
CAACCGATAATTTAACTCGAATTATACGTGCGACCCTAGACTAGTCCAATATAATTGCCT
GAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTC
AGTTTCTTAAATAAAGATAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTAT
TACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCA
GCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAG
CAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACT
CCTATGCTGCCAATCGGTGGATGTTCCATGCGCTCAAGATCCAATACCAGCAACACCCTT
GGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCGC
CGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGAG

consensusID : consensus_10284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 432
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGNTAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGNTCTGACCT-GGNGAGAACGTACCAAAAGACATTTNTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGGATGTTCCATGCGGTCAAGGTCCATTACCAGCAACAACCTTGGGTTTNGCCGGAGCTTGTTTTGCTGGG]

[-] EMBL AU161793             [TTTTTTTTTTTTTTTTTTTTTTTTTAGNCCAATATAATTGCCTGAACCTTAATAATATTNCCTGAATATTGGTCCTATGTCCCCTCTATTTTNAANAGTCGTCANTTTCTTAAATAAAGATAAATAAACAAAGGACANGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACANAGGCCCCTCGNTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGNTCTGACCT GGNGAGAACGTACCAAAAGACATTTNTTGCGCAGAAGAGCAGGTGAACACTACACATTTNGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGGATGTTCCATGCGGTCAAGGTCCATTACCAGCAACAACCTTGGGTTTNGCCGGAGCTTGTTTTGCTGGG]
[-] EMBL AU033255             [TTTTTTTTTTTTTTTTTTTTTTTTTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGGCCNATGTCCCCTCTATTTTTAATAGNCGTCAGTTTCTTAAATAAAGNNAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTNCAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTTTNACCTGGGGGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTGGATTGTACTCCTATGCTGCCAATCGGT GGATGTTCCATGCGNTCAAGATCCcata                                          ]
[-] EMBL AU161839             [ TTTTTTTTTTTTTTTTTTTTTTTTAGTCCAATATAATTGCCTGAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGNTAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTNTCCAGCAACAAAACAGNTCTGACCT GGTGAGAACGTACCAAAAGACATTTNTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCNGCTACTTAGNTTGTACTCCTATGCT                                                                                 ]




>consensus_10284#1
TTTTTTTTTTTTTTTTTTTTTTTTTAGTCCAATATAATTGCCTGAACCTTAATAATATTT
CCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTCAGTTTCTTAAATAAAGN
TAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTATTACTACAATATATCAAC
ACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGNTCTG
ACCTGGNGAGAACGTACCAAAAGACATTTNTTGCGCAGAAGAGCAGGTGAACACTACACA
TTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGG
TGGGATGTTCCATGCGGTCAAGGTCCATTACCAGCAACAACCTTGGGTTTNGCCGGAGCT
TGTTTTGCTGGG

consensusID : consensus_10284#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCATGCGC]

[-] EMBL AU063102             [TTTTTTTTTTTTTTTTTTTTTTAGCTATCAAATTATTACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGTTCCATGCGC]




>consensus_10284#2
TTTTTTTTTTTTTTTTTTTTTTAGCTATCAAATTATTACTACAATATATCAACACTACAT
AGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCAGCAACAAAACAGCTCTGACCTGGT
GAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAGCAGGTGAACACTACACATTTTGCT
CAAATCTCCTACCTTAGCTGCTACTTAGATTGTACTCCTATGCTGCCAATCGGTGGATGT
TCCATGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10284#0      CAACCGATAATTTAACTCGAATTATACGTGCGACCCTAGACTAGTCCAATATAATTGCCT 60
consensus_10284#2      ------------------------------------------------------------
consensus_10284#1      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTAGTCCAATATAATTGCCT 43
                                                                                   

consensus_10284#0      GAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTC 120
consensus_10284#2      ------------------------------------------------------------
consensus_10284#1      GAACCTTAATAATATTTCCTGAATATTGGTCCTATGTCCCCTCTATTTTTAATAGTCGTC 103
                                                                                   

consensus_10284#0      AGTTTCTTAAATAAAGATAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTAT 180
consensus_10284#2      ------------------------TTTTTTTTTTTTTTTTTTTTTTAGCTATCAAATTAT 36
consensus_10284#1      AGTTTCTTAAATAAAGNTAAATAAACAAAGGACATGGACTACGGTTAGCTATCAAATTAT 163
                                                         *    *    ****************

consensus_10284#0      TACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCA 240
consensus_10284#2      TACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCA 96
consensus_10284#1      TACTACAATATATCAACACTACATAGGCCCCTCGCTGGAGCCTGGAAGGGAAGGTCTCCA 223
                       ************************************************************

consensus_10284#0      GCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAG 300
consensus_10284#2      GCAACAAAACAGCTCTGACCTGGTGAGAACGTACCAAAAGACATTTCTTGCGCAGAAGAG 156
consensus_10284#1      GCAACAAAACAGNTCTGACCTGGNGAGAACGTACCAAAAGACATTTNTTGCGCAGAAGAG 283
                       ************ ********** ********************** *************

consensus_10284#0      CAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACT 360
consensus_10284#2      CAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACT 216
consensus_10284#1      CAGGTGAACACTACACATTTTGCTCAAATCTCCTACCTTAGCTGCTACTTAGATTGTACT 343
                       ************************************************************

consensus_10284#0      CCTATGCTGCCAATCGGTGG-ATGTTCCATGCGCTCAAGATCCAATACCAGCAACACCCT 419
consensus_10284#2      CCTATGCTGCCAATCGGTGG-ATGTTCCATGCGC-------------------------- 249
consensus_10284#1      CCTATGCTGCCAATCGGTGGGATGTTCCATGCGGTCAAGGTCCATTACCAGCAACAACCT 403
                       ******************** ************                           

consensus_10284#0      TGGCTTTCGCCGCAGCTTGTTTTGCTGCGGCGGCCGCCGTCGCCGCCGCCGCTGCGGCCG 479
consensus_10284#2      ------------------------------------------------------------
consensus_10284#1      TGGGTTTNGCCGGAGCTTGTTTTGCTGGG------------------------------- 432
                                                                                   

consensus_10284#0      CCGACGCAGCTGGAGACGACGGCGCAGCTGGCGTCTTCCGTGGAG 524
consensus_10284#2      ---------------------------------------------
consensus_10284#1      ---------------------------------------------