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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1039 fasta sequence
[AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAAGCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTTCTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGACCGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTCAGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGAT-GAAGAAAATCCAAGA-TTGGCAAT-GTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTGGTGCTG-TTTTCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATCCTCGAGAGCGGCCTGGGCTTGCTGCTTCTGCTTTTCTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAGGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACATCGGCAAATGCGGAATTTGTTCATTCTTTTTAAAAA]
[+] EMBL CF310007 [AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAAGCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTTCTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGACCGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTCAGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGAT GAAGAAAATCCAAGA TTGGCAAT GTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTGGTGCTG TTTTCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATC ]
[+] EMBL C28934 [ CTCTCGCTCGNTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATNGGCTTCTTCTCCCCCCACAGNAGNTTCGATTCCGCCATCTGATTGNTTTGATGNCTAATTCATATGACCGTAGTCGTCATTAAGCCATTNCAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGNAACTCAGATGAATTTTGCCAGTGCCAGGCNTGNCTTGGCAGGTACACACTACTTGCAGATGGAAGGAAATCCAAGATTTGGCAATGGTTTGAGAGACGACTT CCTTCTTTGNTTGTGGg ]
[+] EMBL BM420031 [ gttcCTGTTTTTCTTTTAGGTTTC TGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATCCTCGAGAGCGGCCTGGGCTTGCTGCTTCTGCTTTTCTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAGGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACATCGGCAAATGCGGAATTTGTTCATTCTTTTTAAAAA]
consensusID : consensus_10285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 922 fasta sequence
[TCTAAAACCTGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC-AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAAACCTTACAATGAACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU101013 [TCTAAAACCTGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTAaaaa ]
[+] EMBL CA763948 [ aaggggGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGNTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGGTCATTCTTTTTAATCAAATGATTTTGGTC ]
[-] EMBL CA761384 [ TAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAA ]
[-] EMBL CF310008 [ ATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCGATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTTTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTACATTATTACCTTACAATGAACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10285#0 AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAA 60
consensus_10285#1 ------------------------------------------------------------
consensus_10285#0 GCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACC 120
consensus_10285#1 ------------------------------------------------------------
consensus_10285#0 CGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTT 180
consensus_10285#1 ------------------------------------------------------------
consensus_10285#0 CTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGAC 240
consensus_10285#1 ------------------------------------------------------------
consensus_10285#0 CGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAG 300
consensus_10285#1 ------------------------------------------------------------
consensus_10285#0 GTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTC 360
consensus_10285#1 --------------------------TCTAAAACCTGGA----GCAAACTGTCAAAGATC 30
*** ** * ** * * ** **
consensus_10285#0 AGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGATGAAGA 420
consensus_10285#1 AGTTGTATTTAGT--GTATAAGATATACAGTAG--GTTTAACATAATTTGC--TTTATCT 84
** ** **** * ** ** * * * * * * *** * **** * *
consensus_10285#0 AAATCCAAGATTGGCAATGTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTG 480
consensus_10285#1 CAAT--GATGTTG-CATTGCCTGTGTAGC--CTTCTTTGTTATGCAAGAAAACTTAGAAA 139
*** * *** ** ** ** * * **** * * ** * * ** *
consensus_10285#0 GTGCTGTTT---TCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCT 537
consensus_10285#1 ATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTA 199
** * * ** * ** * *** * * * * * * ***
consensus_10285#0 TTATTACTGCAAGTAC-TACAACCGCGATCCTCGAGAGCGGCCTGGGCTTG-CTGCTTCT 595
consensus_10285#1 TTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTG 259
** * * * * * * * ** ** * * * ** *** **
consensus_10285#0 GCTTTT-CTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGAT 654
consensus_10285#1 GCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGAT 319
**** * * ***************************************************
consensus_10285#0 TATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGAC 714
consensus_10285#1 TATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGAC 379
************************************************************
consensus_10285#0 ATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTG 774
consensus_10285#1 ATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTG 439
********************* **************************************
consensus_10285#0 GAATGCAAAA-GGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATA 833
consensus_10285#1 GAATGCAAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATA 499
********** ******** ****************************************
consensus_10285#0 TCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACT 893
consensus_10285#1 TCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACT 559
************* **********************************************
consensus_10285#0 TTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAA 953
consensus_10285#1 TTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAA 619
************************************************************
consensus_10285#0 TCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACA-TCGGCAAA- 1011
consensus_10285#1 TCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAA 679
************************************************** ********
consensus_10285#0 TGCGGAATTTGTTCATTCTTTTTAAAAA-------------------------------- 1039
consensus_10285#1 TGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGA 739
************************* *
consensus_10285#0 ------------------------------------------------------------
consensus_10285#1 ACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGA 799
consensus_10285#0 ------------------------------------------------------------
consensus_10285#1 GCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAAACCTTACAATG 859
consensus_10285#0 ------------------------------------------------------------
consensus_10285#1 AACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAA 919
consensus_10285#0 ---
consensus_10285#1 AAA 922
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||