cluster # 10288

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Oryza sativa
cluster # 10288 cluster # 10288 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10288#0 length = 775 sequences # 6

consensus_10288#1 length = 256 sequences # 1

consensusID : consensus_10288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 775
fasta sequence

                              [TCCTTTTAGTTTTACCATCAATGATTTTGTCACACGATTTCCTTCTCATTTCTTAACAATCTCGAGTGCTAAAATACACCGCCATCTGGAGTAGTCCCAAAGGGACCATCCAAGAGAATTCATGCGTGAAATCGCGTTGTTGAGAGAATTCATGCGTGAAATCGCGCTGTTGAGACATCACGCATGACTACGTAGTAGTAGATAAATAACCACAGGACGAGTGTTCAAATAACGGAATATATAGAACACCTAATTATTACACTTAG-TGCCCATACGGATCTTATTACATCAGTGCATC-GG-AAAAAAA-AATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGCGGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAACCTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGGAGGCCCATCCTACTCTTGCTCGCCAGAGACCGAAGAGCCGCTGCCGCCATGGTCGCTGGCG]

[+] EMBL CB683561             [TCCTTTTAGTTTTACCATCAATGATTTTGTCACACGATTTCCTTCTCATTTCTTAACAATCTCGAGTGCTAAAATACACCGCCATCTGGAGTAGTCCCAAAGGGACCATCCAAGAGAATTCATGCGTGAAATCGCGTTGTTGAGAGAATTCATGCGTGAAATCGCGCTGTTGAGACATCACGCATGACTACGTAGTAGTAGATAAATAACCACAGGACGAGTGTTCAAATAACGGAATATATAGAACACCTAATTATTACACTTAG TGCCCATACGGATCTTATTACATCAGTGCATC GG AAAAAAA AATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACNATACGGGGTGAGCGGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAACCTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGGAGGCCCATCCTACTCTTGCTCGCCAGAGACCGAAGAGCCGCTG                  ]
[-] EMBL AK122059             [                                                                                                                                                                                                                     AGGACGAGTGTTCAAATAACGGAATATATAGAACACCTAATTA CACACTTAG TGCCCATACGGATCTTATTACATCAGTGCATC GG AAAAAAA AATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGCGGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAACCTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGGAGGCCCATCCTACTCTTGCTCGCCAGAGACCGAAGAGCCGCTGCCGCCATGGTCGCTGGCG]
[-] EMBL BQ906706             [                                                                                                                                                                                                                         ttttTGTTCAAATAACGGAATATATAGAACACCTAATTATTACACTTAGATGCCCATACGGATCTTATTACATCAGTGCATCGGG AAAAAAACAATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGG                                                                                                                                                                                                                  ]
[+] EMBL D42521               [                                                                                                                                                                                                                                                ATAGAACACCTAATTATTACACTTAG TGCCCATACNGATCTTATTACATCAGTGCATC GG AAAAAAA AATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTNGCTTGATAGCTTCCGATTCTT                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU222741             [                                                                                                                                                                                                                                                                            GCCCATNCGGATCTTATTCCATCAGTGCATC GGAAAAAAAA AATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGCGGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAACCTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGG                                                             ]
[-] EMBL OSS0742A             [                                                                                                                                                                                                                                                                                                                                                                                                                                 GATAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATTCTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGCGAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGCGGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAACCTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGG                                                             ]




>consensus_10288#0
TCCTTTTAGTTTTACCATCAATGATTTTGTCACACGATTTCCTTCTCATTTCTTAACAAT
CTCGAGTGCTAAAATACACCGCCATCTGGAGTAGTCCCAAAGGGACCATCCAAGAGAATT
CATGCGTGAAATCGCGTTGTTGAGAGAATTCATGCGTGAAATCGCGCTGTTGAGACATCA
CGCATGACTACGTAGTAGTAGATAAATAACCACAGGACGAGTGTTCAAATAACGGAATAT
ATAGAACACCTAATTATTACACTTAGTGCCCATACGGATCTTATTACATCAGTGCATCGG
AAAAAAAAATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCC
ATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCT
TCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATT
CTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGC
GAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGC
GGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAAC
CTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGGAGGCCC
ATCCTACTCTTGCTCGCCAGAGACCGAAGAGCCGCTGCCGCCATGGTCGCTGGCG

consensusID : consensus_10288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTGTTCAAANAACGGAATATATAGAACACCTAATTATNACACTTAGNGCCCANACGGATCTTATNACATCAGTGCATCGGAAAAAAAAATCTTACNCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGNCCNCTCGCTTGANAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTT]

[-] EMBL AU030996             [TTTTTTTTTTTTTTTTTTTTGTTCAAANAACGGAATATATAGAACACCTAATTATNACACTTAGNGCCCANACGGATCTTATNACATCAGTGCATCGGAAAAAAAAATCTTACNCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGNCCNCTCGCTTGANAGCTTCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTT]




>consensus_10288#1
TTTTTTTTTTTTTTTTTTTTGTTCAAANAACGGAATATATAGAACACCTAATTATNACAC
TTAGNGCCCANACGGATCTTATNACATCAGTGCATCGGAAAAAAAAATCTTACNCCATCA
ATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCCATCGAGGAAATCACGAGCTTCA
TAGTTATATCAAACAATGGGNCCNCTCGCTTGANAGCTTCCGATTCTTTAAGATTCTTTA
TCAACGAGAGTAGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10288#0      TCCTTTTAGTTTTACCATCAATGATTTTGTCACACGATTTCCTTCTCATTTCTTAACAAT 60
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      CTCGAGTGCTAAAATACACCGCCATCTGGAGTAGTCCCAAAGGGACCATCCAAGAGAATT 120
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      CATGCGTGAAATCGCGTTGTTGAGAGAATTCATGCGTGAAATCGCGCTGTTGAGACATCA 180
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      CGCATGACTACGTAGTAGTAGATAAATAACCACAGGACGAGTGTTCAAATAACGGAATAT 240
consensus_10288#1      ----------------------TTTTTTTTTTTTTTTTTTTTGTTCAAANAACGGAATAT 38
                                             *   *              ******** **********

consensus_10288#0      ATAGAACACCTAATTATTACACTTAGTGCCCATACGGATCTTATTACATCAGTGCATCGG 300
consensus_10288#1      ATAGAACACCTAATTATNACACTTAGNGCCCANACGGATCTTATNACATCAGTGCATCGG 98
                       ***************** ******** ***** *********** ***************

consensus_10288#0      AAAAAAAAATCTTACTCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCC 360
consensus_10288#1      AAAAAAAAATCTTACNCCATCAATAGTATGTCTGAGACAGTCCAGACAAGTAACATGGCC 158
                       *************** ********************************************

consensus_10288#0      ATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGTCCTCTCGCTTGATAGCT 420
consensus_10288#1      ATCGAGGAAATCACGAGCTTCATAGTTATATCAAACAATGGGNCCNCTCGCTTGANAGCT 218
                       ****************************************** ** ********* ****

consensus_10288#0      TCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTTAAGCTTCTCTTCATCTTGCATT 480
consensus_10288#1      TCCGATTCTTTAAGATTCTTTATCAACGAGAGTAGCTT---------------------- 256
                       **************************************                      

consensus_10288#0      CTAAACAGCTCCTCTCCCTCCTCAGTTTGCCTTGGTGCTCTTGAAGATTCTTGCTTAGGC 540
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      GAGGGACTCGTGCCACGTGACTCGGAAACACTGGAAGAGAAGAAACGATACGGGGTGAGC 600
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      GGCGGCGGCGGCGGCGGCGTCAGGTGTTTCCGGCGGAGAAGGCCGCCATGGCTAAGCAAC 660
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      CTTGGCGGGATAACCGTGGCCGCCGGCTGGGGCTGAATCTTGGGTAGAGCGCGGAGGCCC 720
consensus_10288#1      ------------------------------------------------------------
                                                                                   

consensus_10288#0      ATCCTACTCTTGCTCGCCAGAGACCGAAGAGCCGCTGCCGCCATGGTCGCTGGCG 775
consensus_10288#1      -------------------------------------------------------