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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1721 fasta sequence
[TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACATGAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC-ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG-CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT-GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTTTCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTCCTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTTTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTTTATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGCATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCCATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTTCCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGAAGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCCTCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC]
[-] EMBL AU100832 [TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACATGAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTNGGGCTCCACACGAAACACCTCTTGGCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAAC ]
[+] EMBL CB662035 [ tctttttttTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACA ]
[+] EMBL CB676590 [ TATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAACATCATACATTCCCCCTAACGTTCAACAAGGGCTACAGAGGGTATTACTTCTAATTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAAACAATGAAAAAAATGATATTGCAAGCACTG CCATGTATGCCCATTGGGGCAGTCGGGCAGCATGGACAAACAAACCTCAAACCTACCAAATTCCTAGGAAAACCGAAAGCATGCATCTTCAATCTTTCATCAGGGAGGATATTCCCCGAAAACCAACGTGGGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACCCTTCCACGGGCACTTGGCATGGGACCTTTCTGTCTGTTGAGTCCCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAAAAAACATCCCCTTTATCTGTTATAACTGCACTGGGGCGGGCTCCACACAAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCCCCCTCAGCAAATGTACAT ]
[-] EMBL C27538 [ CACAA CTTGTTTACATTGCAATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTGCCCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGA ]
[-] EMBL CB662034 [ TATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTTTCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTCCTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTT ]
[-] EMBL CB676589 [ ACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAAT CTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTTTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTTTATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGCATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCCATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTTCCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGAAGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCCTCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC]
consensusID : consensus_10298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[GTCAGGCATAACATTCCTAACTATATATCTCCGGGAGTAAACATGAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCTACAACAACAGAGCATCACACATTCACCTAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAAAAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGTGCAGCATGGGCAGACCTCAAACCTACCAGATTCCATGCATCTTCAATCTCCATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCAATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACT]
[-] EMBL CA752624 [GTCAGGCATAACATTCCTAACTATATATCTCCGGGAGTAAACATGAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCTACAACAACAGAGCATCACACATTCACCTAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAAAAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGTGCAGCATGGGCAGACCTCAAACCTACCAGATTCCATGCATCTTCAATCTCCATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCAATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10298#0 TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACAT 60
consensus_10298#1 ---------------GTCAGGCATAACA-TTCCTAACTATATATCTCCGGGAGTAAACAT 44
*** ******** ***************** ****** *****
consensus_10298#0 GAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAAC 120
consensus_10298#1 GAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCT------ACAACAAC 98
******** *********************************** * ********
consensus_10298#0 AGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTT 180
consensus_10298#1 AGAGCATCACACATTCACC-TAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTT 157
********* ********* **** ***********************************
consensus_10298#0 GCTACTCTTTGCATATGCACAGCAACAC--------AAGCTTGTTTACATTGCATTGTAA 232
consensus_10298#1 GCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAA 217
************ *************** ** **************** ***
consensus_10298#0 AAAGACAATGAAAAGAATGATATTGCAAGCACTGCCATGTATGCGCATTGGGGCAGTCGG 292
consensus_10298#1 AAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGT 277
******************************** ********** ******* *******
consensus_10298#0 GCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCAT 352
consensus_10298#1 GCAGCATGGGCA----GACCTCAAACCTACCAGATTCC----------------ATGCAT 317
********* ** **************** ***** ******
consensus_10298#0 CTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATG 412
consensus_10298#1 CTTCAATCTC-CATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATG 376
********* ****************** ******************************
consensus_10298#0 AAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTG 472
consensus_10298#1 AAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTG 436
*********** ************************************************
consensus_10298#0 AGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTAT 532
consensus_10298#1 AGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTAT 496
******************************* *** ************************
consensus_10298#0 CTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTTGCATGATTATTTTCCA 592
consensus_10298#1 CTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCA 556
***************************************** ******* **********
consensus_10298#0 ATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCT 652
consensus_10298#1 ATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCT 616
*** ********************************************************
consensus_10298#0 GCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTAT 712
consensus_10298#1 GCCCAAACT--------------------------------------------------- 625
*********
consensus_10298#0 GCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTG 772
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 GGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATG 832
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTT 892
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTC 952
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAA 1012
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGA 1072
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCA 1132
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCAC 1192
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTAT 1252
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCT 1312
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTT 1372
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGC 1432
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 ATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCC 1492
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 ATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTT 1552
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 CCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGA 1612
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 AGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCC 1672
consensus_10298#1 ------------------------------------------------------------
consensus_10298#0 TCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC 1721
consensus_10298#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||