These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1789 fasta sequence [ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCACGGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCACAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGCCGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGAAAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTTTACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTTGGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACATGCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTCAGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTCAGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAGAAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGCTGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTGCATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAATTTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT-CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTATTTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106765 [ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCACGGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCACAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGCCGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGAAAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTTTACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTTGGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACATGCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTCAGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTCAGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAGAAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGCTGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTGCATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAATTTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTATTTCTTGGCTCGAATGAGCCA ] [+] EMBL CB000553 [ AGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGT ] [+] EMBL CB001028 [ AGGGAGGATGAGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGCACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTAC ] [+] EMBL CA998986 [ AGGGAGGATGGGAGAATGATGAAACTGTTGAGCAGGCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTGGGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGCAGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGC ] [-] EMBL CA762605 [ AGAAGAAGCTGGAGTTCGTGGAGATATAGGCCAACTTCTGGGTTTTTCGGCCTTCAAAAGCAAGCCGACTCAAGATGCTTGCTGCCCCAAGGGTATGTGAAGAGCCGCGGTGTTTGCGCTGCATTTGAAGGAAGAGCTGATCTCATGGCCTGAGCAGAGCCCCCCCAGGAGGACCTGGTTGACAGTTCCTGAAGCCAAGTCCCAGTGCCGGTATCAGTGGATGCAAGAGGCTTTGCTTACTGGCTTCTCTGGCTGGCATGACAACTGGAGCAAAGGTGGCGGTGGCGACACCAACTATGACTCT CTCTAGTTGCAAAAGGCATCCCCAGGAGTTCTGGTTTTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCCCCTATCAAGCTCAATTCCTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCCCCCCTGAAACCAAAAGGTATTTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C71753 [ AACNGGAGCAAAGGTGCCGGT GCGACACCAACTATGACTCTCCTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTTTTGTTTATCNTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATGTACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTATATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTCCCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTCCAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATTAAAAGGTATTTCTTGGCTCGAATGAGCCACGGTGGCTn ] consensusID : consensus_10301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAGCA] [+] EMBL AU183588 [GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTGGGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGCCGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCTGATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGTCTCCTGTTTCCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10301#0 ACACACACAAAAAAATCCAGAAAAAAAAACCGCACGAAAAAAAAAGAGCGCCCTCATCAC 60 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GGCGAGGAATTCCCACCTCCTATCTCTCTCCTCCTCCTCCTCCTCTTCTCTCTCCACGCA 120 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 CAAATCTCTCTCCTCCTCCGCTCCCCCACGCCGCACGCATTGCCGCCGTGGGCTCACCGC 180 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 CGGCGAGGGCGGCCGCAGAGGAGGAGGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTG 240 consensus_10301#1 -------------------------GGGGAGCGGCGGCGGCGGCCAACCCGGGCGGTGTG 35 *********************************** consensus_10301#0 GGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGC 300 consensus_10301#1 GGTAGCATGTGTGACCTTGTGGCCCGAACGGGTCGGCATCAGCAGCGGTACGAGGATGGC 95 ************************************************************ consensus_10301#0 CGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCT 360 consensus_10301#1 CGGCGGCTGGTGGCCGGATGCATACCGTTCAGGTATAGAACTAGTAATGATGAAACTTCT 155 ************************************************************ consensus_10301#0 GATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGT 420 consensus_10301#1 GATGATGAACCGAAGAAAATTGTTGAAGTTCTCATGATAAACTCTCAAAGTGGTCCAGGT 215 ************************************************************ consensus_10301#0 CTCCTGTTTCCAAAGGTAATGTTCCCATCTGAATTAGAATCAAGAAATACATGATGATGA 480 consensus_10301#1 CTCCTGTTTCCAAAGGGAGGATGGGAGAATGA--TGAAACTGTTGAGCA----------- 262 **************** * * *** * ** * * consensus_10301#0 AAAAAATGTTTATAAATTGTGTACGCATAAGTTTGCCAAACTCTTTATGGGCGGTTAGTT 540 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TACATGAAATTGCAAGAAAAAAAATCAAATATAAATTTTGATGATTTATGATCTAAATTT 600 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GGATTGGCCTTTACTTGATATGAATTGCTATAAATTTACAAAAATTGCCTGTTTTGACAT 660 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GCTACACTGAAGCGCTACTGCACTATATACCCTATACTATGAGCAACATATTGATATTTC 720 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 AGTTAGCCCATAGGTGGAAAAGTGTCGCTCTTGGCATTTATCATGTTCTTTCTGCCTCTC 780 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 AGATGAATCCATATGAAGTTTGAATGAAATGAGATGCAGGTGTAAACATTGCATATTAAG 840 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 AAATACCAAAGTCCATTGCAAATTATGTTTTGTACTTTTTACTGATTTAGCTTGATAAGC 900 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TGGCAATGCATACATAAAGTATGTCTGAGAAATTTCTTTCACCTACTTTTCTAGATTCTG 960 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 CATAACATCAGATTTTGTTTGTTGGATAAATGTTACATTACCATAGTACTAGGTGGAAAT 1020 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TTTGTTATCTGTGTCTTCTTGTTTCAGGGAGGATGGGAGAATGATGAAACTGTTGAGCAG 1080 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GCAGCTGCTCGAGAGGCTGTAGAAGAAGCTGGAGTTCGTGGAGATATAGTGCAATTTCTG 1140 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GGTTTCTACGACTTCAAAAGCAAGACGCATCAAGATGCGTGCTGCCCCGAGGGTATGTGC 1200 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 AGAGCCGCGGTGTTTGCGCTGCATGTGAAGGAAGAGCTGGACTCATGGCCTGAGCAGAGC 1260 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 ACCCGCAGGAGGACCTGGTTGACAGTTCCTGAAGCCACGTCGCAGTGCCGGTATCAGTGG 1320 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 ATGCAAGAGGCTTTGCTTACTGGCTTCTCTGACTGGCATGACAACTGGAGCAAAGGTGGC 1380 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 GGTGGCGACACCAACTATGACTCTCTCTAGTTGCAGAAGGCATCCACAGGAGTTCTGGTT 1440 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TTGTTTATCTTCTTTTAACTCTCCCTAGGCTCCAACTTTGCAGAATGCAATAATACAATG 1500 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TACACTTGTTCTGATACTAGTAGGTGGTCTTTGACCCTTCATTGCTATCTAGCGTAGTAT 1560 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 ATCTCATCGAAGACGGGAATTCTCACAACTTTTAAGTGTCAATTCTCGTGTCTATTGTTC 1620 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 CCTCACCACCTATCAAGCTCAATTACTTTATCCTGGTGAGCATTTTGTACGTCACTGCTC 1680 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 CAGATTACGGAGCTGCATACGCTATGTATTAACTTGACCACACCTGAAATCAAAAGGTAT 1740 consensus_10301#1 ------------------------------------------------------------ consensus_10301#0 TTCTTGGCTCGAATGAGCCACCGTGGCTAAAAAAAAAAAAAAAAAAAAA 1789 consensus_10301#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||