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Oryza sativa
cluster # 10303 cluster # 10303       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10303#0 length = 2093 sequences # 4  
consensus_10303#1 length = 677 sequences # 2  
consensus_10303#2 length = 434 sequences # 1  

consensusID : consensus_10303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2093
fasta sequence
                              [GATCGCCATCACCAACTCTCGATTTGCGAGGTGAGGACGAGCTCGCCCCGGGCTTGATTAGCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGG-AGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAAGGGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGGGAATCCAGCGGGATGGGTCGCTCCGGGACTGGTCTGAATTTGTTGACCCCTCACCGTCTCCTAAATTG-TTGTATTCGC-AATCGTATGTTGCAATGAGAGGACTGC-TGTCTTCTTTGGTCTCAATGGATTTTGCCTTACTGTCAAGCAGGCTGAAATCTGCATGGGCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGACTTGCATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTCTTCTCGGTCGATGTCTCTCAGAAGATAGTGTCTGAAAACGGGAGGCTTCCGTTTGATGAGGGTGCAGTTGATAGGGGAATGGTGGATGGTAAAGTTAAGGAGCTGGAGACAATTGTGGTGGAGAAAGAGGTTGACATAATTGATGAGAGCGAGGTTGAAGAGAGTCCTCCAGTCCCTGCAATGCTGGATGACGAGGCTGATTTTGTTGAATCAGCCCCTGCAATACCTGATATCAATGATTTGGACATCACTGTGAGAAAGCTTCTGATAATTGTTACGATCACTACTGTTCGGCCACAACAAGCGTATTACCTGAACCGTTTGGCTCATGTCTTGAAAACTGTACAGTCTCCTCTTCTGTGGTTAGTGGTAGAATGGCCTGATCAGTCCTTTCAAACAGCAGAAATCCTTAGGTCTTCTGGGGTTATGTACAGGCATCTCATCTGCAGGAAGAATACTACCAGTGTACGGAAAATTGCTGTATGTCAGAGGAATACTGCAATCTATCATATTAAAAAGCATCGTCTTGATGGTATAATGCATTTTGCTGATGAAGAGCGGTCATACATGAGTGATGTATTTGAAGAAATGCGGAAAATCAGGCGGTTTGGTGCATGGCCTGTAGCAATTCATACTGGGATCAAGTACAGGGTGGTTTTAGAAGGTCCTATATGTAAAGGTAATCGAGTCACTGGATGGAATACAATCCAGAACATCCAGAAGAAGAGTGCAGTTCGTCGATTTCCAGTTGGTTTCTCTGGGTTTGCTTTCAACAGCACAATGCTATGGGATCCTGAGAGGTGGAACCGCCCACCTATGGATTCTGTTATTGTCCACTCAGGTGGAAGAGGTGGTTTGCAGGAGTCAAGATTTATTGAGAAGCTTGTTAAACATGAGCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTCCTCTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCATGCCACCCACTGTGTATGCTCGTACCTCGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCACACTGGATTACACGAAGTTGCCGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCAGTAGCTGTGCCAAGCAAGATGCCTGACCAAATTTTTTTTCCTTTTTTT-TTCTTCTCCACTTCC--TTTTTTTTTTTTGAGGTAAATGTGTACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCACCAGCTAGATGTTCCCCTATAGA-TTTTTTAGCTTCCTTTGTTTTACTGTGTGTTACCTTACAGATGTAAAATCATGCAGCCATTGTAACTGTTAAGAGCAAAGACAACACTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGATAAAAAAAATAAAAAANTTNTAAAAATA]

[+] EMBL AK068237             [GATCGCCATCACCAACTCTCGATTTGCGAGGTGAGGACGAGCTCGCCCCGGGCTTGATTAGCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGG AGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAAGGGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGGGAATCCAGCGGGATGGGTCGCTCCGGGACTGGTCTGAATTTGTTGACCCCTCACCGTCTCCTAAATTG TTGTATTCGC AATCGTATGTTGCAATGAGAGGACTGC TGTCTTCTTTGGTCTCAATGGATTTTGCCTTACTGTCAAGCAGGCTGAAATCTGCATGGGCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGACTTGCATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTCTTCTCGGTCGATGTCTCTCAGAAGATAGTGTCTGAAAACGGGAGGCTTCCGTTTGATGAGGGTGCAGTTGATAGGGGAATGGTGGATGGTAAAGTTAAGGAGCTGGAGACAATTGTGGTGGAGAAAGAGGTTGACATAATTGATGAGAGCGAGGTTGAAGAGAGTCCTCCAGTCCCTGCAATGCTGGATGACGAGGCTGATTTTGTTGAATCAGCCCCTGCAATACCTGATATCAATGATTTGGACATCACTGTGAGAAAGCTTCTGATAATTGTTACGATCACTACTGTTCGGCCACAACAAGCGTATTACCTGAACCGTTTGGCTCATGTCTTGAAAACTGTACAGTCTCCTCTTCTGTGGTTAGTGGTAGAATGGCCTGATCAGTCCTTTCAAACAGCAGAAATCCTTAGGTCTTCTGGGGTTATGTACAGGCATCTCATCTGCAGGAAGAATACTACCAGTGTACGGAAAATTGCTGTATGTCAGAGGAATACTGCAATCTATCATATTAAAAAGCATCGTCTTGATGGTATAATGCATTTTGCTGATGAAGAGCGGTCATACATGAGTGATGTATTTGAAGAAATGCGGAAAATCAGGCGGTTTGGTGCATGGCCTGTAGCAATTCATACTGGGATCAAGTACAGGGTGGTTTTAGAAGGTCCTATATGTAAAGGTAATCGAGTCACTGGATGGAATACAATCCAGAACATCCAGAAGAAGAGTGCAGTTCGTCGATTTCCAGTTGGTTTCTCTGGGTTTGCTTTCAACAGCACAATGCTATGGGATCCTGAGAGGTGGAACCGCCCACCTATGGATTCTGTTATTGTCCACTCAGGTGGAAGAGGTGGTTTGCAGGAGTCAAGATTTATTGAGAAGCTTGTTAAACATGAGCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTCCTCTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCATGCCACCCACTGTGTATGCTCGTACCTCGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCACACTGGATTACACGAAGTTGCCGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCAGTAGCTGTGCCAAGCAAGATGCCTGACCAAATTTTTTTTCCTTTTTTT TTCTTCTCCACTTCC  TTTTTTTTTTTTGAGGTAAATGTGTACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCACCAGCTAGATGTTCCCCTATAGA TTTTTTAGCTTCCTTTGTTTTACTGTGTGTTACCTTACAGATGTAAAATCATGCAGCCATTGTAACTGTTAAGAGCAAAGACAACACTATTGATACATGAAAA                                                        ]
[+] EMBL OSS3086A             [        TCACCAACTCTCGATTTGCGAGGTGAGGACGAGCTCGCCCCGGGCTTGATTAGCTCAAGCCCTGAACCNCCCAGAGCAGCAGCAGCAGCAGCGGTAGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATGTCCACATGAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C71706               [                                           CGCCCCGGGCTTNATTAGCTCAAGCCCTGANCCCCCCANAGCAGCAGCAGCANCAGCGG AGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTNAGAAATTAGGAGAAAAGGGATACATGCATAGCGAGATCTTNATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGGGAATCCAGCGGGATGGGTCGCTCCGGGACTGGTCTGAATTTTTTGACCCCTCACCGTCTCCTAANTTGTTTGTATTCGCAAATCGTATGTTGCAATGAGAGGACTGCTTGTNTTCTTTGGGTTCAATGGATTTTGCCTTACTGTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU033102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCATATCAGATTATCAGTAGCTGTGCCAAGCAAGATGCCTGNCCAAATTTTTTTTCCTTTTTTTNTTCTTCTCCACTTTCTTTTTTTTTTTTTTGAGGTAAATGTGTACTTCCTTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCACCAGCTAGATGTTCCCCTATAGATTTTTTTAGCTTCCTTTGTTTTACTGTGTGTTNCCTTNCAGATGTNAAATCATGCAGCCATTGTAACTGTTAAGAGCAAAGNCNACACTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGATAAAAAAAATAAAAAANTTNTAAAAATA]


>consensus_10303#0 GATCGCCATCACCAACTCTCGATTTGCGAGGTGAGGACGAGCTCGCCCCGGGCTTGATTA GCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGAG AAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTA TCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAAG GGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGG GAATCCAGCGGGATGGGTCGCTCCGGGACTGGTCTGAATTTGTTGACCCCTCACCGTCTC CTAAATTGTTGTATTCGCAATCGTATGTTGCAATGAGAGGACTGCTGTCTTCTTTGGTCT CAATGGATTTTGCCTTACTGTCAAGCAGGCTGAAATCTGCATGGGCGGCTATACTGTCCC AGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGACTTG CATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTCTTCT CGGTCGATGTCTCTCAGAAGATAGTGTCTGAAAACGGGAGGCTTCCGTTTGATGAGGGTG CAGTTGATAGGGGAATGGTGGATGGTAAAGTTAAGGAGCTGGAGACAATTGTGGTGGAGA AAGAGGTTGACATAATTGATGAGAGCGAGGTTGAAGAGAGTCCTCCAGTCCCTGCAATGC TGGATGACGAGGCTGATTTTGTTGAATCAGCCCCTGCAATACCTGATATCAATGATTTGG ACATCACTGTGAGAAAGCTTCTGATAATTGTTACGATCACTACTGTTCGGCCACAACAAG CGTATTACCTGAACCGTTTGGCTCATGTCTTGAAAACTGTACAGTCTCCTCTTCTGTGGT TAGTGGTAGAATGGCCTGATCAGTCCTTTCAAACAGCAGAAATCCTTAGGTCTTCTGGGG TTATGTACAGGCATCTCATCTGCAGGAAGAATACTACCAGTGTACGGAAAATTGCTGTAT GTCAGAGGAATACTGCAATCTATCATATTAAAAAGCATCGTCTTGATGGTATAATGCATT TTGCTGATGAAGAGCGGTCATACATGAGTGATGTATTTGAAGAAATGCGGAAAATCAGGC GGTTTGGTGCATGGCCTGTAGCAATTCATACTGGGATCAAGTACAGGGTGGTTTTAGAAG GTCCTATATGTAAAGGTAATCGAGTCACTGGATGGAATACAATCCAGAACATCCAGAAGA AGAGTGCAGTTCGTCGATTTCCAGTTGGTTTCTCTGGGTTTGCTTTCAACAGCACAATGC TATGGGATCCTGAGAGGTGGAACCGCCCACCTATGGATTCTGTTATTGTCCACTCAGGTG GAAGAGGTGGTTTGCAGGAGTCAAGATTTATTGAGAAGCTTGTTAAACATGAGCGCCAGA TAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTC CTCTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTG TAACATAATATTTTGATGCCATGCCACCCACTGTGTATGCTCGTACCTCGTACAGGTGGC CATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCACACTGGATTACACGAAGTTGC CGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCAGTAGCTGTGCCAAGCAAGAT GCCTGACCAAATTTTTTTTCCTTTTTTTTTCTTCTCCACTTCCTTTTTTTTTTTTGAGGT AAATGTGTACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCACCAGCTAGA TGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGTGTGTTACCTTACAGATGTAA AATCATGCAGCCATTGTAACTGTTAAGAGCAAAGACAACACTATTGATACATGAAAAGAT TTGAATCAAATAATTTAGGTTGTGATAAAAAAAATAAAAAANTTNTAAAAATA



consensusID : consensus_10303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence
                              [TGTTATTGCCCCTCAGGTGGAAGAGGTGGTTTCCGGAGTCCAGGATTTATTGAGAAGCTTGGTAAACATAGCCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTCCTTTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCCCCCCCTGTGTATGCTTGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCCCCCTGGATTACACGAAGTTGCTGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCCGTAGCTGTGCCAAGCAAGATGCCTGACCAATTTTTTTTTCCTTTTTTTTTTTCTCCCCTTTCTTTTTTTTTGAGGGGAATGGGGACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCCCCAGCTAGATGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGGGTGTTCCCCTACAGATGTAAAATCATGCAGCCCTTGTAACTGTTAGAGCAAAGCCACCCCTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGAATGGGAGTTGCTGTAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760174             [TGTTATTGCCCCTCAGGTGGAAGAGGTGGTTTCCGGAGTCCAGGATTTATTGAGAAGCTTGGTAAACATAGCCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTCCTTTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCCCCCCCTGTGTATGCTTGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCCCCCTGGATTACACGAAGTTGCTGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCCGTAGCTGTGCCAAGCAAGATGCCTGACCAATTTTTTTTTCCTTTTTTTTTTTCTCCCCTTTCTTTTTTTTTGAGGGGAATGGGGACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCCCCAGCTAGATGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGGGTGTTCCCCTACAGATGTAAAATCATGCAGCCCTTGTAACTGTTAGAGCAAAGCCACCCCTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGAATGGGAGTTGCTGTAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760175             [TGTTATTGCCCCTCAGGTGGAAGAGGTGGTTTCCGGAGTCCAGGATTTATTGAGAAGCTTGGTAAACATAGCCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGGAACCTCCTTTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCCCCCCCTGTGTATGCTTGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCCCCCTGGATTACACGAAGTTGCTGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCCGTAGCTGTGCCAAGCAAGATGCCTGACCAATTTTTTTTTCCTTTTTTTTTTTCTCCCCTTTCTTTTTTTTTGAGGGGAATGGGGACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCCCCAGCTAGATGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGGGTGTTCCCCTACAGATGTAAAATCATGCAGCCCTTGTAACTGTTAGAGCAAAGCCACCCCTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGAATGGGAGTTGCTGTAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10303#1 TGTTATTGCCCCTCAGGTGGAAGAGGTGGTTTCCGGAGTCCAGGATTTATTGAGAAGCTT GGTAAACATAGCCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGG AATTTTAACTTGGAACCTCCTTTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAAC CTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCCCCCCCTGTGTATGCTTGTAC AGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCCCCCTGGATTACACG AAGTTGCTGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCCGTAGCTGTGCCAA GCAAGATGCCTGACCAATTTTTTTTTCCTTTTTTTTTTTCTCCCCTTTCTTTTTTTTTGA GGGGAATGGGGACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCCCCAGCT AGATGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGGGTGTTCCCCTACAGATG TAAAATCATGCAGCCCTTGTAACTGTTAGAGCAAAGCCACCCCTATTGATACATGAAAAG ATTTGAATCAAATAATTTAGGTTGTGAATGGGAGTTGCTGTAAAAAAAAAAAGAAAAAAA AAAAAAAAAAAAAAAAA



consensusID : consensus_10303#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [AGCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAAGGGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGGGAATNCAGCGGGATGGGTCGCTCCGGGACTGGCTGAAATCTGCATGGGCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGACTTGCATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTCTTCTCGGTCGATGT]

[+] EMBL OS1321753            [AGCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGAGAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGTATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAAGGGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGGGGAATNCAGCGGGATGGGTCGCTCCGGGACTGGCTGAAATCTGCATGGGCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGACTTGCATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTCTTCTCGGTCGATGT]


>consensus_10303#2 AGCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGA GAAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCATCGT ATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAA GGGATACATGCATAGCGAGATCTTGATCTTGGAATGGTGTCCAGTCGAAGGAACACCGGG GGAATNCAGCGGGATGGGTCGCTCCGGGACTGGCTGAAATCTGCATGGGCGGCTATACTG TCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTGAGCTGCAAGAGA CTTGCATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTGGGTTCATGCCGTTC TTCTCGGTCGATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10303#0      GATCGCCATCACCAACTCTCGATTTGCGAGGTGAGGACGAGCTCGCCCCGGGCTTGATTA 60
consensus_10303#2      -----------------------------------------------------------A 1
consensus_10303#1      --------------------------------------------TGTTATTGCCCCTCAG 16
                                                                                   

consensus_10303#0      GCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGAG 120
consensus_10303#2      GCTCAAGCCCTGAACCCCCCAGAGCAGCAGCAGCAGCAGCGGAGGAGGAGGAGGAGGGAG 61
consensus_10303#1      GTGGAAGAGGTGGTTTCCGGAGTCCAGGATTTATTG-AGAAGCTTGGTAAACATAGCCGC 75
                       *   ***   **    **  **  *** *      * **  *    * *     **    

consensus_10303#0      AAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCA-TCGT 179
consensus_10303#2      AAGAGTGCGGGCGCCTCGGGAAGCCGGCCGACAGTGGTACAATTCTGCATCCGCA-TCGT 120
consensus_10303#1      CAGATAGAGGGTCTCCCAGAAGATTG--CAACAGGGTTATGGTTTGGAATTTTAACTTGG 133
                        ***  * ***   * * * *    *  * **** * **   **  * **    * * * 

consensus_10303#0      ATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAA 239
consensus_10303#2      ATCTCCACATGAGCAAAAGGGGGCCTGGAAAGCACGCGCTTTTGAGAAATTAGGAGAAAA 180
consensus_10303#1      AACCTCCTTTACTCAATGTCCCCCCTGGCTGGTCATTGCA--TAAGAACCTTGATGC--C 189
                       * *  *   *   ***       *****   *     **   * ****  * *  *    

consensus_10303#0      GGGATACATGCATAGCGAGATCTTGAT--------CTTGGAATGGT-GTCCAGTCGA--- 287
consensus_10303#2      GGGATACATGCATAGCGAGATCTTGAT--------CTTGGAATGGT-GTCCAGTCGA--- 228
consensus_10303#1      GTTATTCCTGTAACATAATATTTTGATGCCCCCCCCTGTGTATGCTTGTACAGGTGGCCA 249
                       *  ** * ** *     * ** *****        **  * *** * ** ***  *    

consensus_10303#0      --AGGAACACCGGGGGAATCCAGCGGGATGGGTCGCTCCG-GGACTGGTCTGAATTTGTT 344
consensus_10303#2      --AGGAACACCGGGGGAATNCAGCGGGATGGGTCGCTCCG-GGACTGG------------ 273
consensus_10303#1      TGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCCCCCTGGATTACACGAAGTTGCTG 309
                         ***     * * *        * * *     *** **  *** *              

consensus_10303#0      GACCCCTCACCGTCTCCTAAATTGTTGTATTCGCAATCGTATGTTGCAATGAGAGGACTG 404
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      TGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCCGTAGCTGTGCCAAGCAAGATGC 369
                                                                                   

consensus_10303#0      CTGTCTTCTTTGGTCTCAATGGATTTTGCCTTACTGTCAAGCAGGCTGAAATCTGCATGG 464
consensus_10303#2      ---------------------------------------------CTGAAATCTGCATGG 288
consensus_10303#1      CTGACCAATTTTTTTTTCCTTTTTTTTTTTCTCCCCTTTCTTTTTTTTTGAGGGGAATGG 429
                                                                     *   *   * ****

consensus_10303#0      GCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTG 524
consensus_10303#2      GCGGCTATACTGTCCCAGAGGCATACTCGGTCTCCCGAGAGGTCGAAATCGAGGGGGCTG 348
consensus_10303#1      G-GACTTCCCTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCC---CCCAGCTAGATG 485
                       * * **   ** *   *      *  *   *  *** ***  **     * **   * **

consensus_10303#0      AGCTGCAAGAGACTTGC--ATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTG 582
consensus_10303#2      AGCTGCAAGAGACTTGC--ATTTCATCTGTTTGTGTGCTTCATGGTCGGCATCTTCATTG 406
consensus_10303#1      TTCCCCTATAGATTTTTTAGCTTCCTTTGTTT---TACTGGGTGTTCCCCTACAGATGTA 542
                         *  * * *** **      *** * *****   * **   ** **  *  *     * 

consensus_10303#0      GGTTCATGCCGTTCTTCT--CGGTCGATGTCTCTCAGAAGATAGTGTCTGAAAACGGGAG 640
consensus_10303#2      GGTTCATGCCGTTCTTCT--CGGTCGATGT------------------------------ 434
consensus_10303#1      AAATCATGCAGCCCTTGTAACTGTTAGAGCAAAGCCACCCCTATTGATACATGAAAAGAT 602
                          ****** *  *** *  * **    *                               

consensus_10303#0      GCTTCCGTTTGATGAGGGTGCAGTTGATAGGGGAATGGTGGATGGTAAAGTTAAGGAGCT 700
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      TTGAATCAAATAATTTAGGTTGTGAATGGGAGTTGCTGTAAAAAAAAAAAGAAAAAAAAA 662
                                                                                   

consensus_10303#0      GGAGACAATTGTGGTGGAGAAAGAGGTTGACATAATTGATGAGAGCGAGGTTGAAGAGAG 760
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      AAAAAAAAAAAAAAA--------------------------------------------- 677
                                                                                   

consensus_10303#0      TCCTCCAGTCCCTGCAATGCTGGATGACGAGGCTGATTTTGTTGAATCAGCCCCTGCAAT 820
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      ACCTGATATCAATGATTTGGACATCACTGTGAGAAAGCTTCTGATAATTGTTACGATCAC 880
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TACTGTTCGGCCACAACAAGCGTATTACCTGAACCGTTTGGCTCATGTCTTGAAAACTGT 940
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      ACAGTCTCCTCTTCTGTGGTTAGTGGTAGAATGGCCTGATCAGTCCTTTCAAACAGCAGA 1000
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      AATCCTTAGGTCTTCTGGGGTTATGTACAGGCATCTCATCTGCAGGAAGAATACTACCAG 1060
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TGTACGGAAAATTGCTGTATGTCAGAGGAATACTGCAATCTATCATATTAAAAAGCATCG 1120
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TCTTGATGGTATAATGCATTTTGCTGATGAAGAGCGGTCATACATGAGTGATGTATTTGA 1180
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      AGAAATGCGGAAAATCAGGCGGTTTGGTGCATGGCCTGTAGCAATTCATACTGGGATCAA 1240
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      GTACAGGGTGGTTTTAGAAGGTCCTATATGTAAAGGTAATCGAGTCACTGGATGGAATAC 1300
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      AATCCAGAACATCCAGAAGAAGAGTGCAGTTCGTCGATTTCCAGTTGGTTTCTCTGGGTT 1360
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TGCTTTCAACAGCACAATGCTATGGGATCCTGAGAGGTGGAACCGCCCACCTATGGATTC 1420
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TGTTATTGTCCACTCAGGTGGAAGAGGTGGTTTGCAGGAGTCAAGATTTATTGAGAAGCT 1480
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TGTTAAACATGAGCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTG 1540
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      GAATTTTAACTTGGAACCTCCTCTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAA 1600
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      CCTTGATGCCGTTATTCCTGTAACATAATATTTTGATGCCATGCCACCCACTGTGTATGC 1660
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TCGTACCTCGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAACCGCAC 1720
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      ACTGGATTACACGAAGTTGCCGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCA 1780
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      GTAGCTGTGCCAAGCAAGATGCCTGACCAAATTTTTTTTCCTTTTTTTTTCTTCTCCACT 1840
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      TCCTTTTTTTTTTTTGAGGTAAATGTGTACTTCCCTTTTGTATTCTGTTCATTTTTTCCC 1900
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      CCAGATATCCACCAGCTAGATGTTCCCCTATAGATTTTTTAGCTTCCTTTGTTTTACTGT 1960
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      GTGTTACCTTACAGATGTAAAATCATGCAGCCATTGTAACTGTTAAGAGCAAAGACAACA 2020
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      CTATTGATACATGAAAAGATTTGAATCAAATAATTTAGGTTGTGATAAAAAAAATAAAAA 2080
consensus_10303#2      ------------------------------------------------------------
consensus_10303#1      ------------------------------------------------------------
                                                                                   

consensus_10303#0      ANTTNTAAAAATA 2093
consensus_10303#2      -------------
consensus_10303#1      -------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)