cluster # 10304

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Oryza sativa
cluster # 10304 cluster # 10304 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10304#0 length = 726 sequences # 6

consensus_10304#1 length = 438 sequences # 1

consensusID : consensus_10304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 726
fasta sequence

                              [ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCCTCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAAA]

[+] EMBL AK122186             [ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCCTCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAA                     ]
[+] EMBL AK063778             [                                                                                   CGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGT                  ]
[+] EMBL CA755259             [                                                                                   CGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCNAGCAGTTCGACCCCGCCNAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACNACGCCNTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCNATAATATGACACCTGTGGACTTTGCTG                                                                                                           ]
[+] EMBL BI805052             [                                                                                                                                                                                                                                GAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAAA]
[+] EMBL AU091589             [                                                                                                                                                                                                                                        CGATGGCCGTCGTGCCCACNTCCGAGCCCGAGACC TCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCNTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGAC CCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCA TTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAnt]
[+] EMBL C28250               [                                                                                                                                                                                                                                        CGATGGCCGTCGTGCCCANCTCCGAGCCCGANACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACNACGCCGTCGGCGGCGGCTACCAGAAGTNATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAA                                                                                                                                                                ]




>consensus_10304#0
ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCC
TCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTC
TTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTC
CCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCC
GTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGC
CGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTAC
ATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCC
GTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTA
CCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATC
CATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATG
ACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACT
ACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAA
AAAAAA

consensusID : consensus_10304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [TCATCTCTAGATTTCTGGTACCTTCAGTTCAAAATGAGATGCAGCACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAATCTGAATTCTTGCTTAATTATTTCTGTCTTCATGAATTATCATTGTAAAAAAGGATAATGATTCGACCATTCATCTTTTTTTTCAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAAAAAAAAA]

[+] EMBL AU172442             [TCATCTCTAGATTTCTGGTACCTTCAGTTCAAAATGAGATGCAGCACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAATCTGAATTCTTGCTTAATTATTTCTGTCTTCATGAATTATCATTGTAAAAAAGGATAATGATTCGACCATTCATCTTTTTTTTCAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAAAAAAAAA]




>consensus_10304#1
TCATCTCTAGATTTCTGGTACCTTCAGTTCAAAATGAGATGCAGCACTTGAAGCGACTAG
GTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAATCTGAATTCTTGCTTAATT
ATTTCTGTCTTCATGAATTATCATTGTAAAAAAGGATAATGATTCGACCATTCATCTTTT
TTTTCAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTT
GTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATG
GCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCC
TAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAAT
GTTTCCTTCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10304#0      ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCC 60
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      TCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTC 120
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      TTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTC 180
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      CCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCC 240
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      GTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGC 300
consensus_10304#1      --------------TCATCTCTAGATT-TCTGGTACCTTCAGTTCAAAATGAGATGCAGC 45
                                       * * * ***   ***   ** *  *** * * * * *   * **

consensus_10304#0      CGCCGTGACCGCCCGCCCG--TCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCT 358
consensus_10304#1      ACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAAT-CT 104
                           *   *  *  *   *  *  *   *      ** *  **  **   *  **   **

consensus_10304#0      ACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAAC-ACC 417
consensus_10304#1      GAATTCTTGC-----------------TTAATTATTTC----TGTCTT-CATGAATTATC 142
                         **    **                   **  * ***    ** *** * ****  * *

consensus_10304#0      GCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTAT 477
consensus_10304#1      ATTGTAAAAAAGGATAATGAT----TCGAC--CATTCATC-----TTTTTTTTCAGGTAT 191
                          **  *  ****  * **     *** *  *    * *     *  *  *  ******

consensus_10304#0      CTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAA 537
consensus_10304#1      CTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAA 251
                       ************************************************************

consensus_10304#0      ATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAAT 597
consensus_10304#1      ATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAAT 311
                       ************************************************************

consensus_10304#0      ATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGA 657
consensus_10304#1      ATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGA 371
                       ************************************************************

consensus_10304#0      ACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTG 717
consensus_10304#1      ACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAA 431
                       **********************************************************  

consensus_10304#0      TAAAAAAAA 726
consensus_10304#1      AAAAAAA-- 438
                        ******