These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 726 fasta sequence [ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCCTCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAAA] [+] EMBL AK122186 [ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCCTCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAA ] [+] EMBL AK063778 [ CGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGT ] [+] EMBL CA755259 [ CGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTCTTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCNAGCAGTTCGACCCCGCCNAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACNACGCCNTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCNATAATATGACACCTGTGGACTTTGCTG ] [+] EMBL BI805052 [ GAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAAA] [+] EMBL AU091589 [ CGATGGCCGTCGTGCCCACNTCCGAGCCCGAGACC TCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCNTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGAC CCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCA TTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTGTAAAAAAnt] [+] EMBL C28250 [ CGATGGCCGTCGTGCCCANCTCCGAGCCCGANACCGTCTACGACATCAAGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACNACGCCGTCGGCGGCGGCTACCAGAAGTNATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAA ] consensusID : consensus_10304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [TCATCTCTAGATTTCTGGTACCTTCAGTTCAAAATGAGATGCAGCACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAATCTGAATTCTTGCTTAATTATTTCTGTCTTCATGAATTATCATTGTAAAAAAGGATAATGATTCGACCATTCATCTTTTTTTTCAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAAAAAAAAA] [+] EMBL AU172442 [TCATCTCTAGATTTCTGGTACCTTCAGTTCAAAATGAGATGCAGCACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAATCTGAATTCTTGCTTAATTATTTCTGTCTTCATGAATTATCATTGTAAAAAAGGATAATGATTCGACCATTCATCTTTTTTTTCAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10304#0 ATCTCCCTCCTCTCCTCCTCCGTCGCGCCGCAGACGCCAACCCCGATCCCGATGGCCGCC 60 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 TCCGCCTCCGCCGCCGGCGCCGGCGCCGGCAAGTCGCTGTTCCAGACCTTCCGCAAGTTC 120 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 TTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTC 180 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 CCGGGCGCCCTGGAGTACCGCCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCC 240 consensus_10304#1 ------------------------------------------------------------ consensus_10304#0 GTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCAAGTACTACACGCGCGACCGC 300 consensus_10304#1 --------------TCATCTCTAGATT-TCTGGTACCTTCAGTTCAAAATGAGATGCAGC 45 * * * *** *** ** * *** * * * * * * ** consensus_10304#0 CGCCGTGACCGCCCGCCCG--TCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCT 358 consensus_10304#1 ACTTGAAGCGACTAGGTGGGGTTTGTGACTTTTAACTACCTAATTCCAGACGTGAAT-CT 104 * * * * * * * * ** * ** ** * ** ** consensus_10304#0 ACATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAAC-ACC 417 consensus_10304#1 GAATTCTTGC-----------------TTAATTATTTC----TGTCTT-CATGAATTATC 142 ** ** ** * *** ** *** * **** * * consensus_10304#0 GCCGTGGAGGAGGACTACGACGCCGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTAT 477 consensus_10304#1 ATTGTAAAAAAGGATAATGAT----TCGAC--CATTCATC-----TTTTTTTTCAGGTAT 191 ** * **** * ** *** * * * * * * * ****** consensus_10304#0 CTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAA 537 consensus_10304#1 CTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCTTCATTTGTGCCCTTGAA 251 ************************************************************ consensus_10304#0 ATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAAT 597 consensus_10304#1 ATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAAT 311 ************************************************************ consensus_10304#0 ATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGA 657 consensus_10304#1 ATGACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGA 371 ************************************************************ consensus_10304#0 ACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCTG 717 consensus_10304#1 ACTACCTGATGCTGATGCTTTGGTAGTATGGTTCAATGAAAGATGAAATGTTTCCTTCAA 431 ********************************************************** consensus_10304#0 TAAAAAAAA 726 consensus_10304#1 AAAAAAA-- 438 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||