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Oryza sativa
cluster # 10308 cluster # 10308       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10308#0 length = 1681 sequences # 4  
consensus_10308#1 length = 1143 sequences # 1  
consensus_10308#2 length = 377 sequences # 1  
consensus_10308#3 length = 230 sequences # 1  

consensusID : consensus_10308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1681
fasta sequence
                              [ATACCTTTTGTATTTTCCTATTGCACTTACAATAATCATTGAGTCCCGCAACAACACGCGGGGTATTATCAGTTAGAATGATGATACAATCCATCCTTATATAGATGGAGAGAGGACCCAGTCTAATTCTATCCAACAAACTCTATCCTTATCCTTAGGGCCTCGATCCCTCGGCCCACTACCCATGACATATACTTGTAGTTGGCTCTCTGAACTTGATTAGATTCACAAAGTCAACAATTGGTAGTAGTACTCCCTCCGTCCCATAATATAAGGGATTTTGGACAGATGTGAGACGTCCAGATTCATTGTATTAGGATGTGTCACATCTACCCATAATCCCTTGTATTATGGGACTGAGGGAGTACTAGCAGGCAATAGCGACCACCTGCTCAACCAGTTTTTTCCCCTGCTCAACTCCATGTCTCCATCATCTATTCATCTATCGCAAATTCAAATCATAGCCAAATCACTCGGCATTTGGAGTGCATCGATTTTATAGAAATTCATTCCATCACATCGCTACTCGATCCTAAGCCAACGACAAAGCCCCCGCATTGGCAATGGCAATGGCGCCATCATTTTATTTGCTTGTTTATTTCATCAATTTCACGCAACAGTGACACGAGTACCCGATCGACGCGAAGGTCGCACCACCAAGTCATCAATCAACGAGTGACGAAATCCACGACGAGGTCCATCATCTTCGCCGCCGCCGCCGTGCCGGGACGCGTGAGGTGGAACAAGTGGTCTTCCCCCGGCGTGTCCACCAGCTCGGCCTCCCCGTGCCACCGGCTCGCCACGAGCGCCGCGTGGTACGCCCTCCCTTTCCCCGCCAGGAAGTCGTCCCCGGCCACGGCCACCATCACCCTCCTGCACGGCAGCGCCGCCAGCGACGGCGCGCCCTGCTGCACCGTCGGGCTCAGCCGCGGGTCGTCGACGCGGACGTCGGGGCTCCCGCACATGAACCGCCACTC-GCGGCGGATCCGGTCCTCG-AGCGCCGGGCCCATGGTGTTCG-ACGCGTCCCAGAAGTAGGGGTGCATCAGGAGCACGCCGGTGATCCCCGCGCCGCCCGGGAGCGGGGCGGCGGCGGCCCGCATGGCGACGTTGTGC-GCGATGTTCGCGCCGGCGCTGTCCCCGGCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCGACGGCGCCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGCGCCGCCCACGAGTCGTCGTACGCGGCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACGCGGGCGCGGGAGGCGAGCGCGTTGAGGTAGCGGTGGTACGTCGGGGACGTGGCCGACTCGACCA-TGAAGCCGCCGCCGTGGAAGTACACGAGGATCGGCAGCCTCTCGCCGGCGGCGACCGCCGGCGGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTCAACGGTGACGTCCTTGGAAGCCACGCCCGTGGGCTCGTCGAGGGACGCCGCGACCGTGTCGGTGCCGAGCAGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCACGGCGACCGCGTCGGCGTCGGCGTCGGTAGAAGCCATGCGGTGCGCGTGTGGACGCTGGGGTGGTGACGTCAGCTACTGAG]

[+] EMBL CB678953             [ATACCTTTTGTATTTTCCTATTGCACTTACAATAATCATTGAGTCCCGCAACAACACGCGGGGTATTATCAGTTAGAATGATGATACAATCCATCCTTATATAGATGGAGAGAGGACCCAGTCTAATTCTATCCAACAAACTCTATCCTTATCCTTAGGGCCTCGATCCCTCGGCCCACTACCCATGACATATACTTGTAGTTGGCTCTCTGAACTTGATTAGATTCACAAAGTCAACAATTGGTAGTAGTACTCCCTCCGTCCCATAATATAAGGGATTTTGGACAGATGTGAGACGTCCAGATTCATTGTATTAGGATGTGTCACATCTACCCATAATCCCTTGTATTATGGGACTGAGGGAGTACTAGCAGGCAATAGCGACCACCTGCTCAACCAGTTTTTTCCCCTGCTCAACTCCATGTCTCCATCATCTATTCATCTATCGCAAATTCAAATCATAGCCAAATCACTCGGCATTTGGAGTGCATCGATTTTATAGAAATTCATTCCATCACATCGCTACTCGATCCTAAGCCAACGACAAAGCCCCCGCATTGGCAATGGCAATGGCGCCATCATTTTATTTGCTTGTTTATTTCATCAATTTCACGCAACAGTGACACGAGTACCCGATCGACGCGAAGGTCGCACCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AK108107             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGGCGCCATCATTTTATTTGCTTGTTTATTTCATCAATTTCACGCAACAGTGACACGAGTACCCGATCGACGCGAAGGTCGCAGCACCAAGTCATCAATCAACGAGTGACGAAATCCACGACGAGGTCCATCATCTTCGCCGCCGCCGCCGTGCCGGGACGCGTGAGGTGGAACAAGTGGTCTTCCCCCGGCGTGTCCACCAGCTCGGCCTCCCCGTGCCACCGGCTCGCCACGAGCGCCGCGTGGTACGCCCTCCCTTTCCCCGCCAGGAAGTCGTCCCCGGCCACGGCCACCATCACCCTCCTGCACGGCAGCGCCGCCAGCGACGGCGCGCCCTGCTGCACCGTCGGGCTCAGCCGCGGGTCGTCGACGCGGACGTCGGGGCTCCCGCACATGAACCGCCACTC GCGGCGGATCCGGTCCTCG AGCGCCGGGCCCATGGTGTTCG ACGCGTCCCAGAAGTAGGGGTGCATCAGGAGCACGCCGGTGATCCCCGCGCCGCCCGGGAGCGGGGCGGCGGCGGCCCGCATGGCGACGTTGTGC GCGATGTTCGCGCCGGCGCTGTCCCCGGCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCGACGGCGCCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGCGCCGCCCACGAGTCGTCGTACGCGGCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACGCGGGCGCGGGAGGCGAGCGCGTTGAGGTAGCGGTGGTACGTCGGGGACGTGGCCGACTCGACCA TGAAGCCGCCGCCGTGGAAGTACACGAGGATCGGCAGCCTCTCGCCGGCGGCGACCGCCGGCGGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTCAACGGTGACGTCCTTGGAAGCCACGCCCGTGGGCTCGTCGAGGGACGCCGCGACCGTGTCGGTGCCGAGCAGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCACGGCGACCGCGTCGGCGTCGGCGTCGGTAGAAGCCATGCGGTGCGCGTGTGGACGCTGGGGTGGTGACGTCAGCTACTGAG]
[-] EMBL CB678952             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCTCCCGCACATGAACCGCCACTC GCGGCGGATCCGGTCCTCG AGCGCCGGGCCCATGGTGTTCG ACGCGTCCCAGAAGTAGGGGTGCATCAGGAGCACGCCGGTGATCCCCGCGCCGCCCGGGAGCGGGGCGGCGGCGGCCCGCATGGCGACGTTGTGC GCGATGTTCGCGCCGGCGCTGTCCCCGGCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCGACGGCGCCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGCGCCGCCCACGAGTCGTCGTACGCGGCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACGCGGGCGCGGGAGGCGAGCGCGTTGAGGTAGCGGTGGTACGTCGGGGACGTGGCCGACTCGACCA TGAAGCCGCCGCCGTGGAAGTACACGAGGATCGGCAGCCTCTCGCCGGCGGCGACCGCCGGCGGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTCAACGGTGACGTCCTTGGAAGCCACGCCCGTGGGCTCGTCGAGGGACGCCGCGACCGTGTCGGTGCCGAGCAGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCACGGCGACCGCGTCGGCGTCGGCGTCGGTAGAAGCCATGCGGTGCGCGTGTGGACGCTGGGGTG                  ]
[+] EMBL BI806371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCGCACNTGGACCGCCACTCTGCGGCGGATCCGGTCCTCGAAGCGCC GGCCCATGTTGTTCGTACGCGTCCCAGAATTA GGGTGCATCAGGAGCAC CCGGTGATCCCCGC CCGCCC GGAGC GGGC GCGGC GCCCGCATGGCGACGTTGTGCTGCGATGTTCGCGCCGGCGCTGTCCCCGGCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCGACGGCGCCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGC CCGCCCACGAGTCGTCGTACGCGGCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACGCGGGCGCGGGAGGCGAGCGCGTTGAGGTA CGGTGGTACGTCGGGGACGTGGCCGACTCGACCACTGAAGCCGCCGCCGTGGAAGTACACGAGGATCGGCAGCCTCTCGCC GCGGCGACC CCGGCGGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTCAACGGTGACGTCCTTGGAAGCCACGCCCGTGGGCTCGTCGAGGGAC CCGCGACCGTGTCGGTGCCGA CAGG                                                                                                                                  ]


>consensus_10308#0 ATACCTTTTGTATTTTCCTATTGCACTTACAATAATCATTGAGTCCCGCAACAACACGCG GGGTATTATCAGTTAGAATGATGATACAATCCATCCTTATATAGATGGAGAGAGGACCCA GTCTAATTCTATCCAACAAACTCTATCCTTATCCTTAGGGCCTCGATCCCTCGGCCCACT ACCCATGACATATACTTGTAGTTGGCTCTCTGAACTTGATTAGATTCACAAAGTCAACAA TTGGTAGTAGTACTCCCTCCGTCCCATAATATAAGGGATTTTGGACAGATGTGAGACGTC CAGATTCATTGTATTAGGATGTGTCACATCTACCCATAATCCCTTGTATTATGGGACTGA GGGAGTACTAGCAGGCAATAGCGACCACCTGCTCAACCAGTTTTTTCCCCTGCTCAACTC CATGTCTCCATCATCTATTCATCTATCGCAAATTCAAATCATAGCCAAATCACTCGGCAT TTGGAGTGCATCGATTTTATAGAAATTCATTCCATCACATCGCTACTCGATCCTAAGCCA ACGACAAAGCCCCCGCATTGGCAATGGCAATGGCGCCATCATTTTATTTGCTTGTTTATT TCATCAATTTCACGCAACAGTGACACGAGTACCCGATCGACGCGAAGGTCGCACCACCAA GTCATCAATCAACGAGTGACGAAATCCACGACGAGGTCCATCATCTTCGCCGCCGCCGCC GTGCCGGGACGCGTGAGGTGGAACAAGTGGTCTTCCCCCGGCGTGTCCACCAGCTCGGCC TCCCCGTGCCACCGGCTCGCCACGAGCGCCGCGTGGTACGCCCTCCCTTTCCCCGCCAGG AAGTCGTCCCCGGCCACGGCCACCATCACCCTCCTGCACGGCAGCGCCGCCAGCGACGGC GCGCCCTGCTGCACCGTCGGGCTCAGCCGCGGGTCGTCGACGCGGACGTCGGGGCTCCCG CACATGAACCGCCACTCGCGGCGGATCCGGTCCTCGAGCGCCGGGCCCATGGTGTTCGAC GCGTCCCAGAAGTAGGGGTGCATCAGGAGCACGCCGGTGATCCCCGCGCCGCCCGGGAGC GGGGCGGCGGCGGCCCGCATGGCGACGTTGTGCGCGATGTTCGCGCCGGCGCTGTCCCCG GCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCGACGGCG CCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGCGCCGCCCACGAGTCGTCGTACGCG GCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACGCGGGCG CGGGAGGCGAGCGCGTTGAGGTAGCGGTGGTACGTCGGGGACGTGGCCGACTCGACCATG AAGCCGCCGCCGTGGAAGTACACGAGGATCGGCAGCCTCTCGCCGGCGGCGACCGCCGGC GGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTCAACGGTGACGTCCTTGGAAGCC ACGCCCGTGGGCTCGTCGAGGGACGCCGCGACCGTGTCGGTGCCGAGCAGGCGCTCCACG CGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCACGGCGACCGCGTCGGCGTCG GCGTCGGTAGAAGCCATGCGGTGCGCGTGTGGACGCTGGGGTGGTGACGTCAGCTACTGA G



consensusID : consensus_10308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1143
fasta sequence
                              [GTAGTGTGTCAATAGACATCTGTGTTTTACATGGATTCATACTAGGCGAAATCAGCATAAATCAAATAACAAATCATACAGCAATAGCAATAGACAGCAGCATGCCCAATGCAACAGTTACCCAAGAGGCCATTGGATTCTCTACCGATTTACGAACTCAGCAATGGCGTCGTCCTGCCTGACGGCCTCGTCGCCGTTGAAGTCCATCAGGTGGAAGCAGTGGCCATGGCCGGCCACCTCGACGACCTCCACCTCCCCCGCCCACCCGCTCGCCTTAAGCCCCTCGCAGTACGCGCGGCCGCGGTCGCGGATCACATCCTTCTCCGCGAGGCACACGAGCACGCGGCCGCAGGCCAGCCCTTCCAACCCCGGCGCGCCGTCGGCGAGCGGGTTGATCCACGGATCGTCGACGCCGGTGGTCGCCGGGCACACGACGCTCCACATCTTCACCACGTTCTCCGCCATCGCCGGGTCCCAGTCCTCTGAGGGGACCTTGCCGCGGCCGAGGAAGTAGGGGTGGACTAGGACGACGCCGTTGACCCTGCCGCCGTGGGGGAGCCCCTCGGCGCCGGCTCGCATGGCCATGTTGTGCGCGATGTTCGCGCCGGCGCTCTCCCCGGCGAGGTACACGCGGGAGAAGTCGGCGTGGTCGGTGAGCCAGGTCTCCTCGCCGGCGCCGGGGGCGTGGGAGGCCGCCCAGAGGACAGCCTGCCACGAGTCCTCGTACGCGGCGGGGAGGGGGTGCTCGGGCGCGAGGCGGTACTCGACGGAGACGACGATGGCTCGGGTGCGCGCGGCGAGGGAGGTGAGGTAGGCGTGGAAGACGAAGTTGAAGGCCGTGTGGAGGCAGAAGCCGCCGCCATGGAAGTAGATGAGGAGCGGGAGCTTCTTTCCCTCACCTTCCCCGCTCACGCCGGCGACGGGCGGGAGGTAGAGGCGGACGGAGACGTCGGGGGAGATGGCGCGGTCTTTGGAGGCGACGCCGGTGGCGGCATCTGTGGAGGCCGGGACGGAGTCGGAACCGAAGTAGCGCTCGACGCGGCCGCCCTTGAAGATGCGTATGCAGTGTTCGACCTCGAAGACGACCTCGCCGTCGATGTCGCCGGAGCCAGCCATGGAGTCGGGATCAACTACGGTAGGTGT]

[-] EMBL AK064734             [GTAGTGTGTCAATAGACATCTGTGTTTTACATGGATTCATACTAGGCGAAATCAGCATAAATCAAATAACAAATCATACAGCAATAGCAATAGACAGCAGCATGCCCAATGCAACAGTTACCCAAGAGGCCATTGGATTCTCTACCGATTTACGAACTCAGCAATGGCGTCGTCCTGCCTGACGGCCTCGTCGCCGTTGAAGTCCATCAGGTGGAAGCAGTGGCCATGGCCGGCCACCTCGACGACCTCCACCTCCCCCGCCCACCCGCTCGCCTTAAGCCCCTCGCAGTACGCGCGGCCGCGGTCGCGGATCACATCCTTCTCCGCGAGGCACACGAGCACGCGGCCGCAGGCCAGCCCTTCCAACCCCGGCGCGCCGTCGGCGAGCGGGTTGATCCACGGATCGTCGACGCCGGTGGTCGCCGGGCACACGACGCTCCACATCTTCACCACGTTCTCCGCCATCGCCGGGTCCCAGTCCTCTGAGGGGACCTTGCCGCGGCCGAGGAAGTAGGGGTGGACTAGGACGACGCCGTTGACCCTGCCGCCGTGGGGGAGCCCCTCGGCGCCGGCTCGCATGGCCATGTTGTGCGCGATGTTCGCGCCGGCGCTCTCCCCGGCGAGGTACACGCGGGAGAAGTCGGCGTGGTCGGTGAGCCAGGTCTCCTCGCCGGCGCCGGGGGCGTGGGAGGCCGCCCAGAGGACAGCCTGCCACGAGTCCTCGTACGCGGCGGGGAGGGGGTGCTCGGGCGCGAGGCGGTACTCGACGGAGACGACGATGGCTCGGGTGCGCGCGGCGAGGGAGGTGAGGTAGGCGTGGAAGACGAAGTTGAAGGCCGTGTGGAGGCAGAAGCCGCCGCCATGGAAGTAGATGAGGAGCGGGAGCTTCTTTCCCTCACCTTCCCCGCTCACGCCGGCGACGGGCGGGAGGTAGAGGCGGACGGAGACGTCGGGGGAGATGGCGCGGTCTTTGGAGGCGACGCCGGTGGCGGCATCTGTGGAGGCCGGGACGGAGTCGGAACCGAAGTAGCGCTCGACGCGGCCGCCCTTGAAGATGCGTATGCAGTGTTCGACCTCGAAGACGACCTCGCCGTCGATGTCGCCGGAGCCAGCCATGGAGTCGGGATCAACTACGGTAGGTGT]


>consensus_10308#1 GTAGTGTGTCAATAGACATCTGTGTTTTACATGGATTCATACTAGGCGAAATCAGCATAA ATCAAATAACAAATCATACAGCAATAGCAATAGACAGCAGCATGCCCAATGCAACAGTTA CCCAAGAGGCCATTGGATTCTCTACCGATTTACGAACTCAGCAATGGCGTCGTCCTGCCT GACGGCCTCGTCGCCGTTGAAGTCCATCAGGTGGAAGCAGTGGCCATGGCCGGCCACCTC GACGACCTCCACCTCCCCCGCCCACCCGCTCGCCTTAAGCCCCTCGCAGTACGCGCGGCC GCGGTCGCGGATCACATCCTTCTCCGCGAGGCACACGAGCACGCGGCCGCAGGCCAGCCC TTCCAACCCCGGCGCGCCGTCGGCGAGCGGGTTGATCCACGGATCGTCGACGCCGGTGGT CGCCGGGCACACGACGCTCCACATCTTCACCACGTTCTCCGCCATCGCCGGGTCCCAGTC CTCTGAGGGGACCTTGCCGCGGCCGAGGAAGTAGGGGTGGACTAGGACGACGCCGTTGAC CCTGCCGCCGTGGGGGAGCCCCTCGGCGCCGGCTCGCATGGCCATGTTGTGCGCGATGTT CGCGCCGGCGCTCTCCCCGGCGAGGTACACGCGGGAGAAGTCGGCGTGGTCGGTGAGCCA GGTCTCCTCGCCGGCGCCGGGGGCGTGGGAGGCCGCCCAGAGGACAGCCTGCCACGAGTC CTCGTACGCGGCGGGGAGGGGGTGCTCGGGCGCGAGGCGGTACTCGACGGAGACGACGAT GGCTCGGGTGCGCGCGGCGAGGGAGGTGAGGTAGGCGTGGAAGACGAAGTTGAAGGCCGT GTGGAGGCAGAAGCCGCCGCCATGGAAGTAGATGAGGAGCGGGAGCTTCTTTCCCTCACC TTCCCCGCTCACGCCGGCGACGGGCGGGAGGTAGAGGCGGACGGAGACGTCGGGGGAGAT GGCGCGGTCTTTGGAGGCGACGCCGGTGGCGGCATCTGTGGAGGCCGGGACGGAGTCGGA ACCGAAGTAGCGCTCGACGCGGCCGCCCTTGAAGATGCGTATGCAGTGTTCGACCTCGAA GACGACCTCGCCGTCGATGTCGCCGGAGCCAGCCATGGAGTCGGGATCAACTACGGTAGG TGT



consensusID : consensus_10308#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [CGYGGGYACACCGSGABYCBCAGGVSCGGGACAVKGRCGCTTTMAGGTACKGMMGWACGTSGGGGACGTGCCGACTSYKCCATAASCCSCCSCCGGTGGAGGTACACGAGGATGGGCAGCCTTCTTSCGGSGCGACCSCCGGCGGGAGGTAGAGGCGCACGYAGAGGTTGMTCGCCGGTCAACGGTACGTCCTTGGAASCKACCCCCGTGGCCTCGTCGAGGAACGCCGCGACCGTGTCGGTSCCGAGCAGGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCAACGGCGACCGSGTCGGCGTCGGCGTCGGMTAGAAAGCCAATGCGGTGCGCGTGTGGAACGCCTGGGGTGGTGACG]

[-] EMBL AA752517             [CGYGGGYACACCGSGABYCBCAGGVSCGGGACAVKGRCGCTTTMAGGTACKGMMGWACGTSGGGGACGTGCCGACTSYKCCATAASCCSCCSCCGGTGGAGGTACACGAGGATGGGCAGCCTTCTTSCGGSGCGACCSCCGGCGGGAGGTAGAGGCGCACGYAGAGGTTGMTCGCCGGTCAACGGTACGTCCTTGGAASCKACCCCCGTGGCCTCGTCGAGGAACGCCGCGACCGTGTCGGTSCCGAGCAGGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTCCAACGGCGACCGSGTCGGCGTCGGCGTCGGMTAGAAAGCCAATGCGGTGCGCGTGTGGAACGCCTGGGGTGGTGACG]


>consensus_10308#2 CGYGGGYACACCGSGABYCBCAGGVSCGGGACAVKGRCGCTTTMAGGTACKGMMGWACGT SGGGGACGTGCCGACTSYKCCATAASCCSCCSCCGGTGGAGGTACACGAGGATGGGCAGC CTTCTTSCGGSGCGACCSCCGGCGGGAGGTAGAGGCGCACGYAGAGGTTGMTCGCCGGTC AACGGTACGTCCTTGGAASCKACCCCCGTGGCCTCGTCGAGGAACGCCGCGACCGTGTCG GTSCCGAGCAGGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCTC CAACGGCGACCGSGTCGGCGTCGGCGTCGGMTAGAAAGCCAATGCGGTGCGCGTGTGGAA CGCCTGGGGTGGTGACG



consensusID : consensus_10308#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence
                              [CGTCGAGGTGGCCGGCCATGNNGTNGCTTCCACCTGATGGACTTCAACGGCGACGAGGCCGTCACNGGTATCGACGCCATTGCTGAGTTCGTAAATCGGTAGAGAATCCAATGGCCTCTTGGGTAACTGTTGCATTGGGCATGCTGCTGTCTATTGCTATTGCTGTATGATTTGTTATTTGATTTATGCTGATTTCGCCTAGTATGAATCCATGTAAAAAAAAAAAAAAA]

[+] EMBL AU069888             [CGTCGAGGTGGCCGGCCATGNNGTNGCTTCCACCTGATGGACTTCAACGGCGACGAGGCCGTCACNGGTATCGACGCCATTGCTGAGTTCGTAAATCGGTAGAGAATCCAATGGCCTCTTGGGTAACTGTTGCATTGGGCATGCTGCTGTCTATTGCTATTGCTGTATGATTTGTTATTTGATTTATGCTGATTTCGCCTAGTATGAATCCATGTAAAAAAAAAAAAAAA]


>consensus_10308#3 CGTCGAGGTGGCCGGCCATGNNGTNGCTTCCACCTGATGGACTTCAACGGCGACGAGGCC GTCACNGGTATCGACGCCATTGCTGAGTTCGTAAATCGGTAGAGAATCCAATGGCCTCTT GGGTAACTGTTGCATTGGGCATGCTGCTGTCTATTGCTATTGCTGTATGATTTGTTATTT GATTTATGCTGATTTCGCCTAGTATGAATCCATGTAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10308#0      ATACCTTTTGTATTTTCCTATTGCACTTACAATAATCATTGAGTCCCGCAACAACACGCG 60
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GGGTATTATCAGTTAGAATGATGATACAATCCATCCTTATATAGATGGAGAGAGGACCCA 120
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GTCTAATTCTATCCAACAAACTCTATCCTTATCCTTAGGGCCTCGATCCCTCGGCCCACT 180
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      ACCCATGACATATACTTGTAGTTGGCTCTCTGAACTTGATTAGATTCACAAAGTCAACAA 240
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TTGGTAGTAGTACTCCCTCCGTCCCATAATATAAGGGATTTTGGACAGATGTGAGACGTC 300
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      CAGATTCATTGTATTAGGATGTGTCACATCTACCCATAATCCCTTGTATTATGGGACTGA 360
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GGGAGTACTAGCAGGCAATAGCGACCACCTGCTCAACCAGTTTTTTCCCCTGCTCAACTC 420
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      CATGTCTCCATCATCTATTCATCTATCGCAAATTCAAATCATAGCCAAATCACTCGGCAT 480
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------------------------
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TTGGAGTGCATCGATTTTATAGAAATTCATTCCATCACATCGCTACTCGATCCTAAGCCA 540
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ------------------------------------------GTAGTGTGTCAATAGACA 18
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      ACGACAAAGCCCCCGCATTGGCAATGGCAATGGCGCCATCATTTTATTTGCTTGTTTATT 600
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TCTGTGTTTTACATGGATTCATACTAG-----GCGAAATCAGCATAAATCAAATAACAAA 73
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TCATCAATTTCACGCAACAGTGACACGAGTACCCGATCGACGCGAAGGTCGCACCACCAA 660
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TCATACAGCAATAGCAATAGACAGCAGCATGCCCAATGCAACAGTTACCCAAGAGGCCAT 133
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GTCATCAATCAACGAGTGACGAAATCCACGACGAGGTCCATCATCTTCGCCGCCGCCGCC 720
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TGGATTCTCTACCGATTTACGAACTCAGCAATGGCGTCGTCCTGCCTGACGGCCTCGTCG 193
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GTGCCGGGACGCGTGAGGTGGAACAAGTGGTCTTCCCCCGGCGTGTCCACCAGCTCGGCC 780
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      CCGTTGAAGTCCATCAGGTGGAAGCAGTGGCCATGGCCGGCCACCTCGACGACCTCCACC 253
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TCCCCGTGCCACCGGCTCGCCACGAGCGCCGCGTGGTACGCCCTCCCTTTCCCCGCCAGG 840
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TCCCCCGCCCACCCGCTCGCCTTAAGCCCCTCGCAGTACGCGCGGCCGCGGTCGCGGATC 313
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      AAGTCGTCCCCGGCCACGGCCACCATCACCCTCCTGCACGGCAGCGCCGCCAGCGACGGC 900
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ACATCCTTCTCCGCGAGGCACACGAGCACGCGGCCGCAGGCCAGCCCTTCCAACCCCGGC 373
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GCGCCCTGCTGCACCGTCGGGCTCAGCCGCGGGTCGTCGACG-CGGACGTCGGGGCTCCC 959
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      GCGCCGTCGGCGAGCGGGTTGATCCACGGATCGTCGACGCCGGTGGTCGCCGGGCACACG 433
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GCACATGAACCGCCACTCGCGGCGGATCCGGTCCTCGAGCGCCGGGCCCATGGTG----T 1015
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      ACGCTCCACATCTTCACCACGTTCTCCGCCATCGCCGGGTCCCAGTCCTCTGAGGGGACC 493
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TCGACGCGTCCCAG-AAGTAGGGGTGCATCAGGAGCACGCCGGTGATCCCCGCGCCGCCC 1074
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TTGCCGCGGCCGAGGAAGTAGGGGTGGACTAGGACGACGCCGTTGACCCTGCCGCCGTGG 553
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      GGGAGCGGGGCGGCGGCGGCCCGCATGGCGACGTTGTGCGCGATGTTCGCGCCGGCGCTG 1134
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      GGGAGCCCCTCGGCGCCGGCTCGCATGGCCATGTTGTGCGCGATGTTCGCGCCGGCGCTC 613
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TCCCCGGCGATGAACACCCGCGACGCGTCCCCGTGCGCGGCGAGCCACGGCTCCGGATCG 1194
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      TCCCCGGCGAGGTACACGCGGGAGAAGTCGGCGTGGTCGGTGAGCCAGGTCTCC---TCG 670
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      ACGGCGCCGGGGGCGGCGGCGGTGGCGACCGCCCACGCGAGCGCCGCCCACGAGTCGTCG 1254
consensus_10308#2      ------------------------------------------------------------
consensus_10308#1      CCGGCGCCGGGGGCGTGGGAGG------CCGCCCAGAGGACAGCCTGCCACGAGTCCTCG 724
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      TACGCGGCGGGGAGCGGGTGCTCGGGCGCGAGGCGGTACTCGACGGACACCGCGACGACG 1314
consensus_10308#2      --------------------------------------CGYGG-GYACACCGSGABY-CB 20
consensus_10308#1      TACGCGGCGGGGAGGGGGTGCTCGGGCGCGAGGCGGTACTCGACGGAGACGACGATGGCT 784
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      CGGGCGCGGGAGGCGAGCGCGTTGAGGTAGCGGTGGTACGTCGGGGACGTGGCCGACTCG 1374
consensus_10308#2      CAGGVSCGGGACAVKGRCGCTTTMAGGTA-CKGMMGWACGTSGGGGACGTG-CCGACTSY 78
consensus_10308#1      CGGGTGCGCGCGGCGAGGGAGGTGAGGTAGGCGTGGAAGACGAAGTTGAAGGCCGTGTGG 844
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      ACCATGAAGCCGCCGCCG-TGGAAGTACACGAGGATCGGCAGCCTCTCGCCG-------- 1425
consensus_10308#2      KCCAT-AASCCSCCSCCGGTGGAGGTACACGAGGATGGGCAGCCTTCTTSCG-------- 129
consensus_10308#1      AGGCAGAAGCCGCCGCCA-TGGAAGTAGATGAGGAGCGGGAGCTTCTTTCCCTCACCTTC 903
consensus_10308#3      ------------------------------------------------------------
                                                                                   

consensus_10308#0      -------GCGGCGACCGCCGGCGGGAGGTAGAGGCGCACGGAGAGGTTGGTCGCCGGGTC 1478
consensus_10308#2      -------GSG-CGACCSCCGGCGGGAGGTAGAGGCGCACGYAGAGGTTGMTCGCCGG-TC 180
consensus_10308#1      CCCGCTCACGCCGGCGACGGGCGGGAGGTAGAGGCGGACGGAGACGTCG------GGGGA 957
consensus_10308#3      --------------------------CGTCGAGGTGGCCGGCCATGNNG----TNGCTTC 30
                                                  ** **** *  **   * *  *      *    

consensus_10308#0      AACGGTGACGTCCTTGGAAGCCACGCCCGTGGGCTCGTCGAGGGACGCCGCGACCGTGTC 1538
consensus_10308#2      AACGGT-ACGTCCTTGGAASCKACCCCCGTGGCCTCGTCGAGGAACGCCGCGACCGTGTC 239
consensus_10308#1      GATGGCGCGGTCTTTGGAGGCGACGCCGGTGGCGGCATCTGTGGAGGCCGGGACGGAGTC 1017
consensus_10308#3      CACCTGATGGACTTCAACGGCGACGA-GGCCGTCACNGGTATCGACGCCATTGCTGAGTT 89
                        *       * * *      * **    *  *   *        * ***    * * ** 

consensus_10308#0      GGTGCCGAGCAGG-CGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCT 1597
consensus_10308#2      GGTSCCGAGCAGGGCGCTCCACGCGGCCGCTCACGTAGACGCGGATGAACGGGAGGAGCT 299
consensus_10308#1      GGAACCGAAGTAG-CGCTCGACGCGGCCGCCCTTGAAGATGCGTATGCAGTGTTCGACCT 1076
consensus_10308#3      CGTAAATCGGTAGAGAATCCA-ATGGCCTCTTGGGTAACTGT---TGCATTGGGCATGCT 145
                        *          *    ** *   **** *    * *   *    ** *  *      **

consensus_10308#0      CCA-CGGCGACCGCGTCGGCGTCGGCGTCGG-TAGAAGCC--ATGCGGTGCGCGTGTGGA 1653
consensus_10308#2      CCAACGGCGACCGSGTCGGCGTCGGCGTCGGMTAGAAAGCCAATGCGGTGCGCGTGTGGA 359
consensus_10308#1      CGA-AGACGACCTCGCCGTCGATGTCGCCGG--AGCCAGCC-ATGGAGTCGGGATCAACT 1132
consensus_10308#3      GCT--GTCTATTGCTATTGCTGTATGATTTGTTATTTGATTTATGCTGATTTCGCCTAGT 203
                            * * *         *          *  *        ***  *            

consensus_10308#0      -CGC--TGGGGTGGTGACGTCAGCTACTGAG 1681
consensus_10308#2      ACGC-CTGGGGTGGTGACG------------ 377
consensus_10308#1      ACGG-TAGGTGT------------------- 1143
consensus_10308#3      ATGAATCCATGTAAAAAAAAAAAAAAA---- 230
                         *       **                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)