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Oryza sativa
cluster # 10310 cluster # 10310       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10310#0 length = 1849 sequences # 4  
consensus_10310#1 length = 690 sequences # 1  
consensus_10310#2 length = 678 sequences # 1  
consensus_10310#3 length = 162 sequences # 1  

consensusID : consensus_10310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1849
fasta sequence
                              [TGCCTTCAGCGTCAGGAGTGGAGGAGGGGATTCCAGTGGAGGACGAGGCCTCTTCTTGCTGCAGTTCTCCTCTCCGTAAGCCATACATACCCCGTGTTGTAATTGGACACAATGCCATGGGTAGAGAGATCTATAAGCCTATCGGAGGTGAAGACTTCAGGGCACTTGATCCGTGGGAAGCCAAATACCAGGCAAAAAGAGATTGTCAAATGAAACTGCCCACTTTACTCCCATGCGTACCTGACACATGCCTTACTGATCGGAACCTCCTCCACATTCGTGAATCATCGACTAAGACTGTTCTTTATGCTGCAAAGTTTGTTGTGGGTCTTTCGTCTACTATAGATGGCAAGTCATTATCTAAGAGTTCTGGTTTCATGATCGATTGGGATGAGAAGAGCAAAACAGGCACTATTTTGACATCAGCCCTTCTTATTTGCAAACAGTCCCCTTCTTTAGATGATTGGAAAAGTGCAAACCAGTATGCTTCTAATGCTAAGGTTGCAGTTCGCTTTGTGGATGGTACCACTGTGGAGGGTCATTTTCTATATTGTCAGGAGCATTACAACCTTGCTTTCTACAAGATTGTAGTGGACAGATCCATCCATTTACCCTCCTTTAATGAAGGAGTGAAATGGGCTGAAGAGGTCTTTATCCTGGGAAGAGATGAAAATTCGTATCTGAGAACAAGCTATGGTAGGGTTCAGTATTTGAATCCACATATGAATGAACGCCGTCACTATGTATACATTGATGGTTTCAGTGCACCTCCTGAGTATTACAACGGGGGACCAGTCATTGACTTAAGGGGAGATGTTGTGGGCATGTCTATCCGCAGTACAAGAGGGTCTTTTATTCCTTCTAACATCATCCTCAAGTGCTTGCAGATGTGGAGGAAGTTCCAATGCATTCCTCGACCACATCTTCAAATGAAGTTTTGGGGCATGAAATTTCTTAACCCTGCTCATCTTGAGGTGATATCTTGCAAGTGCAACATTGATGAGGGCCTTATCGTTAAAGAGGTGTCAGAAGGTTCTATTGCTGAGAAACTTGGGGTTAGAGTTGGTGATGTCATTAAATTCTTCAACGGAAAACATATCTCTTCTACTGTTGAGTTGGAACTACTGTTGCTGCAAATATCAGAGGATCATTTTTACAATGGAAATGGCCTTGATTCCAAAATAGATATTGTGATTGGAGTATTCCACACACGCAGTGGTGTTTGGAGAAGTCGGAAGTTGACAGTACATGTATCCGACAAAGGAGAAGTTGTTATAAGAGGTGAATTTCCTGTCACTAGAGAGACAATTTATGCAAGATGTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCACAGATCGAACATCGTCATCGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGACACCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGNTCTGTCTT-CCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCACATGGAGCTNTGCAAATATTTCTCTTTTTAGAGTTGAAAAAAAAA]

[+] EMBL AK106767             [TGCCTTCAGCGTCAGGAGTGGAGGAGGGGATTCCAGTGGAGGACGAGGCCTCTTCTTGCTGCAGTTCTCCTCTCCGTAAGCCATACATACCCCGTGTTGTAATTGGACACAATGCCATGGGTAGAGAGATCTATAAGCCTATCGGAGGTGAAGACTTCAGGGCACTTGATCCGTGGGAAGCCAAATACCAGGCAAAAAGAGATTGTCAAATGAAACTGCCCACTTTACTCCCATGCGTACCTGACACATGCCTTACTGATCGGAACCTCCTCCACATTCGTGAATCATCGACTAAGACTGTTCTTTATGCTGCAAAGTTTGTTGTGGGTCTTTCGTCTACTATAGATGGCAAGTCATTATCTAAGAGTTCTGGTTTCATGATCGATTGGGATGAGAAGAGCAAAACAGGCACTATTTTGACATCAGCCCTTCTTATTTGCAAACAGTCCCCTTCTTTAGATGATTGGAAAAGTGCAAACCAGTATGCTTCTAATGCTAAGGTTGCAGTTCGCTTTGTGGATGGTACCACTGTGGAGGGTCATTTTCTATATTGTCAGGAGCATTACAACCTTGCTTTCTACAAGATTGTAGTGGACAGATCCATCCATTTACCCTCCTTTAATGAAGGAGTGAAATGGGCTGAAGAGGTCTTTATCCTGGGAAGAGATGAAAATTCGTATCTGAGAACAAGCTATGGTAGGGTTCAGTATTTGAATCCACATATGAATGAACGCCGTCACTATGTATACATTGATGGTTTCAGTGCACCTCCTGAGTATTACAACGGGGGACCAGTCATTGACTTAAGGGGAGATGTTGTGGGCATGTCTATCCGCAGTACAAGAGGGTCTTTTATTCCTTCTAACATCATCCTCAAGTGCTTGCAGATGTGGAGGAAGTTCCAATGCATTCCTCGACCACATCTTCAAATGAAGTTTTGGGGCATGAAATTTCTTAACCCTGCTCATCTTGAGGTGATATCTTGCAAGTGCAACATTGATGAGGGCCTTATCGTTAAAGAGGTGTCAGAAGGTTCTATTGCTGAGAAACTTGGGGTTAGAGTTGGTGATGTCATTAAATTCTTCAACGGAAAACATATCTCTTCTACTGTTGAGTTGGAACTACTGTTGCTGCAAATATCAGAGGATCATTTTTACAATGGAAATGGCCTTGATTCCAAAATAGATATTGTGATTGGAGTATTCCACACACGCAGTGGTGTTTGGAGAAGTCGGAAGTTGACAGTACATGTATCCGACAAAGGAGAAGTTGTTATAAGAGGTGAATTTCCTGTCACTAGAGAGACAATTTATGCAAGATGTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCACAGATCGAACATCGTCATCGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGACACCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGTTCTGTCTT CCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTT                                                        ]
[+] EMBL AU108647             [TGCCTTCAGCGTCAGGAGTGGAGGAGGGGATTCCAGTGGAGGACGAGGCCTCTTCTTGCTGCAGTTCTCCTCTCCGTAAGCCATACATACCCCGTNTTGTAATTGGACACAATGCCATGGGTAGAGAGATCTATAAGCCTATCGGAGGTGAAGACTTNAGGGCACTTGATCCGTGGGAAGCCAAATACCAGGCAAAAAGAGATTGTCAAATGAAACTGCCCACTTTACTCCCATGCGTACCTGACACATGCCTTACTGATCGGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA764082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAAATTCTTCAACGGAAAAC  ATCTCTTCTACTGTTGAGTTGGAACTACTGTTGCTGCAAATATCAGAGGATCATTTTTACAATGGAAATGGCCTTGATTCCAAAATAGATATTGTGATTGGAGTATTCCACACACGCAGTGGTGTTTGGAGAAGTCGGAAGTTGACAGTACATGTATCCGACAAAGGAGAAGTTGTTATAAGAGGTGAATTTCCTGTCACTAGAGAGACAATTTATGCAAGATGTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCACAGATCGA     G CATCGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGACACCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGNTCTGTCTT CCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGNTCTAGCTTTTCATTATGTCCACATGGAGCTN                                   ]
[+] EMBL AU068363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCANCTTTCCATCTCCCACNTATGGTATTAGTCAACGTGTAAATGGATAGACCCATTGTACGCTGCTGGCCATCTTTGNTCTGTCTTCCCATTTTCTTGGAGTGCGTCTTTTCTTTTANCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAAAAAAAA]


>consensus_10310#0 TGCCTTCAGCGTCAGGAGTGGAGGAGGGGATTCCAGTGGAGGACGAGGCCTCTTCTTGCT GCAGTTCTCCTCTCCGTAAGCCATACATACCCCGTGTTGTAATTGGACACAATGCCATGG GTAGAGAGATCTATAAGCCTATCGGAGGTGAAGACTTCAGGGCACTTGATCCGTGGGAAG CCAAATACCAGGCAAAAAGAGATTGTCAAATGAAACTGCCCACTTTACTCCCATGCGTAC CTGACACATGCCTTACTGATCGGAACCTCCTCCACATTCGTGAATCATCGACTAAGACTG TTCTTTATGCTGCAAAGTTTGTTGTGGGTCTTTCGTCTACTATAGATGGCAAGTCATTAT CTAAGAGTTCTGGTTTCATGATCGATTGGGATGAGAAGAGCAAAACAGGCACTATTTTGA CATCAGCCCTTCTTATTTGCAAACAGTCCCCTTCTTTAGATGATTGGAAAAGTGCAAACC AGTATGCTTCTAATGCTAAGGTTGCAGTTCGCTTTGTGGATGGTACCACTGTGGAGGGTC ATTTTCTATATTGTCAGGAGCATTACAACCTTGCTTTCTACAAGATTGTAGTGGACAGAT CCATCCATTTACCCTCCTTTAATGAAGGAGTGAAATGGGCTGAAGAGGTCTTTATCCTGG GAAGAGATGAAAATTCGTATCTGAGAACAAGCTATGGTAGGGTTCAGTATTTGAATCCAC ATATGAATGAACGCCGTCACTATGTATACATTGATGGTTTCAGTGCACCTCCTGAGTATT ACAACGGGGGACCAGTCATTGACTTAAGGGGAGATGTTGTGGGCATGTCTATCCGCAGTA CAAGAGGGTCTTTTATTCCTTCTAACATCATCCTCAAGTGCTTGCAGATGTGGAGGAAGT TCCAATGCATTCCTCGACCACATCTTCAAATGAAGTTTTGGGGCATGAAATTTCTTAACC CTGCTCATCTTGAGGTGATATCTTGCAAGTGCAACATTGATGAGGGCCTTATCGTTAAAG AGGTGTCAGAAGGTTCTATTGCTGAGAAACTTGGGGTTAGAGTTGGTGATGTCATTAAAT TCTTCAACGGAAAACATATCTCTTCTACTGTTGAGTTGGAACTACTGTTGCTGCAAATAT CAGAGGATCATTTTTACAATGGAAATGGCCTTGATTCCAAAATAGATATTGTGATTGGAG TATTCCACACACGCAGTGGTGTTTGGAGAAGTCGGAAGTTGACAGTACATGTATCCGACA AAGGAGAAGTTGTTATAAGAGGTGAATTTCCTGTCACTAGAGAGACAATTTATGCAAGAT GTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCACAGATCGAA CATCGTCATCGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTA CTTCTACTGAAGGAAGGACACCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAA CGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCA ACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGG TATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGNTCTGTC TTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAG ATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATG TCCACATGGAGCTNTGCAAATATTTCTCTTTTTAGAGTTGAAAAAAAAA



consensusID : consensus_10310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [GGCCGGCCCTGCATTAGGATTCCCCACCAAAAGCAATTGGATATTGGGTGATATGCAAATGGTCCATTTTTAGGAATATAAATTGGAGTCCAGTTGGGGTTTCCCTTTCATCAGTTATATGGGTGATAAATAATTCTGATCCAAAATGATGTTTATTGTCCAGACAATTTTCAAATCTCTCTCGCAGATCGAACATGGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGGCACCCACCTGATCCCCCATAATTTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCCCTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCCCTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCCCATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGTTTCTTTTTTAGAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761704             [GGCCGGCCCTGCATTAGGATTCCCCACCAAAAGCAATTGGATATTGGGTGATATGCAAATGGTCCATTTTTAGGAATATAAATTGGAGTCCAGTTGGGGTTTCCCTTTCATCAGTTATATGGGTGATAAATAATTCTGATCCAAAATGATGTTTATTGTCCAGACAATTTTCAAATCTCTCTCGCAGATCGAACATGGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGGCACCCACCTGATCCCCCATAATTTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCCCTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCCCTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCCCATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGTTTCTTTTTTAGAAAAAAAAAAAAAAAAAAA]


>consensus_10310#1 GGCCGGCCCTGCATTAGGATTCCCCACCAAAAGCAATTGGATATTGGGTGATATGCAAAT GGTCCATTTTTAGGAATATAAATTGGAGTCCAGTTGGGGTTTCCCTTTCATCAGTTATAT GGGTGATAAATAATTCTGATCCAAAATGATGTTTATTGTCCAGACAATTTTCAAATCTCT CTCGCAGATCGAACATGGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCCAT GCCCCTACTTCTACTGAAGGAAGGGCACCCACCTGATCCCCCATAATTTGATCCAAGATT TTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCCCTTATGGTA TTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCC CTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTG TTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAAC CATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTT CATTATGTCCCCATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGT TTCTTTTTTAGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10310#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [CGGCGCGCCCGCCAGCGGTCCCGCGCGCGCAAACCTCCCCAGCGCCCGCCCGCACTCGCGCGAGAACAACAGCCCCGCTCGCTCCGGTGACAGCGGGCGGTCGCCTGCTCCTCCCGCTTCTCGCGACCGCGCGCGTCCGCTGTCCGTCGTCGCGATCGCCGCGAGAGCGAGCTTCTCTCCCACACTGGTGCCTTTCCTGAAGCAAGCCCCCCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGTTTCTTTTTTAGAAACTCTACGTTTGGCCATTAACAAGTTAATCAGTTCTATGAATTGCCATAAAAAACAAAAAAA]

[-] EMBL CA761552             [CGGCGCGCCCGCCAGCGGTCCCGCGCGCGCAAACCTCCCCAGCGCCCGCCCGCACTCGCGCGAGAACAACAGCCCCGCTCGCTCCGGTGACAGCGGGCGGTCGCCTGCTCCTCCCGCTTCTCGCGACCGCGCGCGTCCGCTGTCCGTCGTCGCGATCGCCGCGAGAGCGAGCTTCTCTCCCACACTGGTGCCTTTCCTGAAGCAAGCCCCCCCACCTGATCCACCATAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCATTATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGTTTCTTTTTTAGAAACTCTACGTTTGGCCATTAACAAGTTAATCAGTTCTATGAATTGCCATAAAAAACAAAAAAA]


>consensus_10310#2 CGGCGCGCCCGCCAGCGGTCCCGCGCGCGCAAACCTCCCCAGCGCCCGCCCGCACTCGCG CGAGAACAACAGCCCCGCTCGCTCCGGTGACAGCGGGCGGTCGCCTGCTCCTCCCGCTTC TCGCGACCGCGCGCGTCCGCTGTCCGTCGTCGCGATCGCCGCGAGAGCGAGCTTCTCTCC CACACTGGTGCCTTTCCTGAAGCAAGCCCCCCCACCTGATCCACCATAATCTGATCCAAG ATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATG GTATTAATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTC CCACTTATGGTATTAGTCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATCT TTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCTT AACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCT TTTCATTATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAA TGTTTCTTTTTTAGAAACTCTACGTTTGGCCATTAACAAGTTAATCAGTTCTATGAATTG CCATAAAAAACAAAAAAA



consensusID : consensus_10310#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence
                              [GGGTATTAATCAACGTGTACCATGGGATGAGACTCATTGTACAGCTGCTGGTGCATCTTTCCACATGCTCCCACTTATGTATTAGCTCAACGTGTAAATGGATAGACTCATTGTACACTCTGCCCATCTTTGTTCTGTCATCCCAATTTTAAAAAAAAAAAA]

[+] EMBL BI803130             [GGGTATTAATCAACGTGTACCATGGGATGAGACTCATTGTACAGCTGCTGGTGCATCTTTCCACATGCTCCCACTTATGTATTAGCTCAACGTGTAAATGGATAGACTCATTGTACACTCTGCCCATCTTTGTTCTGTCATCCCAATTTTAAAAAAAAAAAA]


>consensus_10310#3 GGGTATTAATCAACGTGTACCATGGGATGAGACTCATTGTACAGCTGCTGGTGCATCTTT CCACATGCTCCCACTTATGTATTAGCTCAACGTGTAAATGGATAGACTCATTGTACACTC TGCCCATCTTTGTTCTGTCATCCCAATTTTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      TGCCTTCAGCGTCAGGAGTGGAGGAGGGGATTCCAGTGGAGGACGAGGCCTCTTCTTGCT 60
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      GCAGTTCTCCTCTCCGTAAGCCATACATACCCCGTGTTGTAATTGGACACAATGCCATGG 120
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      GTAGAGAGATCTATAAGCCTATCGGAGGTGAAGACTTCAGGGCACTTGATCCGTGGGAAG 180
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CCAAATACCAGGCAAAAAGAGATTGTCAAATGAAACTGCCCACTTTACTCCCATGCGTAC 240
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CTGACACATGCCTTACTGATCGGAACCTCCTCCACATTCGTGAATCATCGACTAAGACTG 300
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      TTCTTTATGCTGCAAAGTTTGTTGTGGGTCTTTCGTCTACTATAGATGGCAAGTCATTAT 360
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CTAAGAGTTCTGGTTTCATGATCGATTGGGATGAGAAGAGCAAAACAGGCACTATTTTGA 420
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CATCAGCCCTTCTTATTTGCAAACAGTCCCCTTCTTTAGATGATTGGAAAAGTGCAAACC 480
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      AGTATGCTTCTAATGCTAAGGTTGCAGTTCGCTTTGTGGATGGTACCACTGTGGAGGGTC 540
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      ATTTTCTATATTGTCAGGAGCATTACAACCTTGCTTTCTACAAGATTGTAGTGGACAGAT 600
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CCATCCATTTACCCTCCTTTAATGAAGGAGTGAAATGGGCTGAAGAGGTCTTTATCCTGG 660
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      GAAGAGATGAAAATTCGTATCTGAGAACAAGCTATGGTAGGGTTCAGTATTTGAATCCAC 720
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      ATATGAATGAACGCCGTCACTATGTATACATTGATGGTTTCAGTGCACCTCCTGAGTATT 780
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      ACAACGGGGGACCAGTCATTGACTTAAGGGGAGATGTTGTGGGCATGTCTATCCGCAGTA 840
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CAAGAGGGTCTTTTATTCCTTCTAACATCATCCTCAAGTGCTTGCAGATGTGGAGGAAGT 900
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      TCCAATGCATTCCTCGACCACATCTTCAAATGAAGTTTTGGGGCATGAAATTTCTTAACC 960
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      CTGCTCATCTTGAGGTGATATCTTGCAAGTGCAACATTGATGAGGGCCTTATCGTTAAAG 1020
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      AGGTGTCAGAAGGTTCTATTGCTGAGAAACTTGGGGTTAGAGTTGGTGATGTCATTAAAT 1080
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ------------------------------------------------------------
consensus_10310#0      TCTTCAACGGAAAACATATCTCTTCTACTGTTGAGTTGGAACTACTGTTGCTGCAAATAT 1140
                                                                                   

consensus_10310#2      ------------------------------------------------------------
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ----------------------------------------GGCCGGCCCTGCATTAGGAT 20
consensus_10310#0      CAGAGGATCATTTTTACAATGGAAATGGCCTTGATTCCAAAATAGATATTGTGATTGGAG 1200
                                                                                   

consensus_10310#2      -----------------------------------CGGCGCGCCCGCCAGCGGTCCCGCG 25
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      TCCCCACCAAAAGCAATTGGATATTGGGTGATATGCAAATGGTCCATTTTTAGGAATATA 80
consensus_10310#0      TATTCCACACACGCAGTGGTGTTTGGAGAAGTCGGAAGTTGACAGTACATGTATCCGACA 1260
                                                                                   

consensus_10310#2      CGCGCAAACCTCCCCAGCGC------CCGCCCGCACTCG--CGCGAGAACAACA-GCCCC 76
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      AATTGGAGTCCAGTTGGGGT------TTCCCTTTCATCAGTTATATGGGTGATA-AATAA 133
consensus_10310#0      AAGGAGAAGTTGTTATAAGAGGTGAATTTCCTGTCACTAGAGAGACAATTTATGCAAGAT 1320
                                                                                   

consensus_10310#2      GCTCGCTCCGG--TGACAGCGGGCGGTCGCCTGCTCCTCCCGCTTCTCGCGACCGCGCGC 134
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      TTCTGATCCAAAATGATGTTTATTGTCCAGACAATTTTCAAATCTCTCTCG-CAGATCGA 192
consensus_10310#0      GTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCA-CAGATCGA 1379
                                                                                   

consensus_10310#2      GTCCGCTGTCCGTCGTCGCGATCGCCGCGA------GAGCGAGCTTCTCTCCCACACTGG 188
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ACATGGTCATCGTCATCGTCATCATCATCA------GATTCAGGTTCTCTCC-ATGCCCC 245
consensus_10310#0      ACATCGTCATCGTCATCGTCATCGTCATCATCATCAGATTCAGGTTCTCTCC-ATGCCCC 1438
                                                                                   

consensus_10310#2      TGCCTTTCCTGAAGCAAGCCCCCCCACCTGATCCACCATAATCTGATCCAAGATTTTAAT 248
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      TACTTCTACTGAAGGAAGGGCACCCACCTGATCCCCCATAATTTGATCCAAGATTTTAAT 305
consensus_10310#0      TACTTCTACTGAAGGAAGGACACCCACCTGATCCACCATAATCTGATCCAAGATTTTAAT 1498
                                                                                   

consensus_10310#2      AACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAAT 308
consensus_10310#3      --------------------------------------------------GGGTATTAAT 10
consensus_10310#1      AACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCCCTTATGGTATTAAT 365
consensus_10310#0      AACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTAAT 1558
                                                                          *********

consensus_10310#2      CAACGTGTAC-ATGGAT--AGACTCATTGTAC-GCTGCTGGT-CATCTTTCCAT---CTC 360
consensus_10310#3      CAACGTGTACCATGGGATGAGACTCATTGTACAGCTGCTGGTGCATCTTTCCACATGCTC 70
consensus_10310#1      CAACGTGTAC-ATGGAT--AGACTCATTGTAC-GCTGCTGGT-CATCTTTCCAT---CTC 417
consensus_10310#0      CAACGTGTAC-ATGGAT--AGACTCATTGTAC-GCTGCTGGT-CATCTTTCCAT---CTC 1610
                       ********** ****    ************* ********* **********    ***

consensus_10310#2      CCACTTATGGTATTAG-TCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATC 419
consensus_10310#3      CCACTTATG-TATTAGCTCAACGTGTAAATGGATAGACTCATTGTACACT-CTGCCCATC 128
consensus_10310#1      CCCCTTATGGTATTAG-TCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATC 476
consensus_10310#0      CCACTTATGGTATTAG-TCAACGTGTAAATGGATAGACTCATTGTACGCTGCTGGCCATC 1669
                       ** ****** ****** ****************************** ** *** *****

consensus_10310#2      TTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCT 479
consensus_10310#3      TTTGTTCTGTCATCCCAATTTTAAAAAAAAAAAA-------------------------- 162
consensus_10310#1      TTTGTTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCT 536
consensus_10310#0      TTTGNTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCTTTTTGGGATTCCT 1729
                       **** ****** ***   ** *   *                                  

consensus_10310#2      TAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGC 539
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      TAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGC 596
consensus_10310#0      TAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGC 1789
                                                                                   

consensus_10310#2      TTTTCATTATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGA 599
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      TTTTCATTATGTCCCCATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGA 656
consensus_10310#0      TTTTCATTATGTCCACATGGAGCTNTGCAAATATTTCTCTTTTTAGAGTTGAAAAAAAAA 1849
                                                                                   

consensus_10310#2      ATGTTTCTTTTTTAGAAACTCTACGTTTGGCCATTAACAAGTTAATCAGTTCTATGAATT 659
consensus_10310#3      ------------------------------------------------------------
consensus_10310#1      ATGTTTCTTTTTTAGAAAAAAAAAAAAAAAAAAA-------------------------- 690
consensus_10310#0      ------------------------------------------------------------
                                                                                   

consensus_10310#2      GCCATAAAAAACAAAAAAA 678
consensus_10310#3      -------------------
consensus_10310#1      -------------------
consensus_10310#0      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)