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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence
[GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC-TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG-GAGTCCTTCACCAGCATCATGTCCAAGGTGG-AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG-CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA]
[+] EMBL C27892 [GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG GAGTCCTTCACCAGCATCATGTCCAAGGTGG AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGT ]
[+] EMBL AU100897 [ CCCTTCCTTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGNAAGTCCTTCACCAGCATCATGTCCAAGGTGGAAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAGACAGGTGAGGTGGTT GGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTT CACAAGCAACTATA GAA GTTTTGTGGAAGAATATGACCGGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA]
consensusID : consensus_10319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 505 fasta sequence
[CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA]
[+] EMBL OS1378A [CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTAT ]
[+] EMBL CF322494 [ CGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGAT GGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA]
consensusID : consensus_10319#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT]
[+] EMBL AA754509 [GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT]
consensusID : consensus_10319#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 374 fasta sequence
[GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA]
[+] EMBL CF320942 [GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAA ]
[-] EMBL CF320941 [ ATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10319#1 ---------------------------------------------------------CCC 3
consensus_10319#2 GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCC 60
consensus_10319#0 ------------------------------------------------------------
consensus_10319#3 ------------------------------------------------------------
consensus_10319#1 TNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTC 63
consensus_10319#2 TCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTC 120
consensus_10319#0 ------------------------------------------------------------
consensus_10319#3 ------------------------------------GACACTGACATGGACTGAGGAGTA 24
consensus_10319#1 CTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCC 123
consensus_10319#2 CTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNC 180
consensus_10319#0 ----------------------GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCC 38
consensus_10319#3 GAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTT 84
* * * * ** * * ** *** **
consensus_10319#1 NCT----NCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNA-- 177
consensus_10319#2 CCT----CCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCA-- 234
consensus_10319#0 CCT----CCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCA-- 92
consensus_10319#3 TGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAAC 144
* ** * * ** *** * * * * ** * * *
consensus_10319#1 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGG 237
consensus_10319#2 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGG 294
consensus_10319#0 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGG 152
consensus_10319#3 CCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCC-TGTCAGTCCATCCATTGT 203
*** * * * * ** * * ** * * **** *** * * * *
consensus_10319#1 TATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGA---TTTNAAAACTNAGT------ 288
consensus_10319#2 TATGGTGCGGGGCTTGTAGANCGATGG-CNCCCGTGNATATTCTATATATATATCTTTGG 353
consensus_10319#0 TATGGTGCGGGCCTTGTAGAGCGATGG-CACCCGTGA---TTTCAAAACTGAGC------ 202
consensus_10319#3 TTTTCTG-GGCCTTTGTCATAGTTCAACCATTCCAGT---GTTGGGCTACAAGTC----- 254
* * ** ** **** * * *
consensus_10319#1 -----AGTNGGTANCNNAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 342
consensus_10319#2 ATTTCAGCCGGTNCCCCNNGATACCTATCTCCN-A-GTTGACNTTGACCTGGAT------ 405
consensus_10319#0 -----AGCCGGTACCCCAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 256
consensus_10319#3 -----CCCCAGAATTTTTTCTCGCC-ATCGGCACAAGTTAATCATGA-ACCTACGATGTT 307
* ** *** * * *** * *** *
consensus_10319#1 GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTA 402
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTT-CTACTACCA 315
consensus_10319#3 TGGCGTCTCGAAAGTGAAA-AAAAATAAATTAAATGCTTGAGTTTCACCT--GAAAAAAA 364
consensus_10319#1 TAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTT 462
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 AGGTCGGAAGCAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGA 375
consensus_10319#3 AAACAAAAAA-------------------------------------------------- 374
consensus_10319#1 TTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA----------------- 505
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 AAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCA 435
consensus_10319#3 ------------------------------------------------------------
consensus_10319#1 ------------------------------------------------------------
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 GATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTT 495
consensus_10319#3 ------------------------------------------------------------
consensus_10319#1 ------------------------------------------------------------
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 GTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTA 555
consensus_10319#3 ------------------------------------------------------------
consensus_10319#1 ------------------------------------------------------------
consensus_10319#2 ------------------------------------------------------------
consensus_10319#0 TAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA 615
consensus_10319#3 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||