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Oryza sativa
cluster # 10319 cluster # 10319       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10319#0 length = 615 sequences # 2  
consensus_10319#1 length = 505 sequences # 2  
consensus_10319#2 length = 405 sequences # 1  
consensus_10319#3 length = 374 sequences # 2  

consensusID : consensus_10319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 615
fasta sequence
                              [GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC-TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG-GAGTCCTTCACCAGCATCATGTCCAAGGTGG-AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG-CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA]

[+] EMBL C27892               [GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG GAGTCCTTCACCAGCATCATGTCCAAGGTGG AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGT                                                                                                                                                                               ]
[+] EMBL AU100897             [                                    CCCTTCCTTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGNAAGTCCTTCACCAGCATCATGTCCAAGGTGGAAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAGACAGGTGAGGTGGTT GGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTT CACAAGCAACTATA GAA GTTTTGTGGAAGAATATGACCGGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA]


>consensus_10319#0 GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCCTCCTCAGGTGATTCCAG CATGGTGGTGGTCGGATCGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGA GAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGC ACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACAT TGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATT CCATTTCTACTACCAAGGTCGGAAGCAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACT TGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATG ACCCGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTT CTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATT TAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGG GAAAAAAAAAAAAAA



consensusID : consensus_10319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 505
fasta sequence
                              [CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA]

[+] EMBL OS1378A              [CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTAT                                                                                                                                                                                                  ]
[+] EMBL CF322494             [                                                         CGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGAT GGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA]


>consensus_10319#1 CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGC CTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCA CCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCA GCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTAT GGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNN AAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGAT CTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGC CTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATG TTTTGCTCTTGTAGCCAACATTCCA



consensusID : consensus_10319#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT]

[+] EMBL AA754509             [GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT]


>consensus_10319#2 GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCC TCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTC CTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNC CCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCA TCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGT GCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAG CCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT



consensusID : consensus_10319#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 374
fasta sequence
                              [GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA]

[+] EMBL CF320942             [GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAA ]
[-] EMBL CF320941             [         ATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA]


>consensus_10319#3 GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCA CCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCA AACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCT GGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTG TTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTA CGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAA AAAAAAACAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10319#1      ---------------------------------------------------------CCC 3
consensus_10319#2      GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCC 60
consensus_10319#0      ------------------------------------------------------------
consensus_10319#3      ------------------------------------------------------------
                                                                                   

consensus_10319#1      TNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTC 63
consensus_10319#2      TCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTC 120
consensus_10319#0      ------------------------------------------------------------
consensus_10319#3      ------------------------------------GACACTGACATGGACTGAGGAGTA 24
                                                                                   

consensus_10319#1      CTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCC 123
consensus_10319#2      CTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNC 180
consensus_10319#0      ----------------------GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCC 38
consensus_10319#3      GAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTT 84
                                               *  * *  *    **   *  * **   *** **  

consensus_10319#1      NCT----NCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNA-- 177
consensus_10319#2      CCT----CCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCA-- 234
consensus_10319#0      CCT----CCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCA-- 92
consensus_10319#3      TGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAAC 144
                         *     ** *     * **  ***  *    *    *     *  **  * *   *  

consensus_10319#1      CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGG 237
consensus_10319#2      CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGG 294
consensus_10319#0      CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGG 152
consensus_10319#3      CCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCC-TGTCAGTCCATCCATTGT 203
                       ***  *   *      * * ** * * ** *  *   **** ***    * *  *   * 

consensus_10319#1      TATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGA---TTTNAAAACTNAGT------ 288
consensus_10319#2      TATGGTGCGGGGCTTGTAGANCGATGG-CNCCCGTGNATATTCTATATATATATCTTTGG 353
consensus_10319#0      TATGGTGCGGGCCTTGTAGAGCGATGG-CACCCGTGA---TTTCAAAACTGAGC------ 202
consensus_10319#3      TTTTCTG-GGCCTTTGTCATAGTTCAACCATTCCAGT---GTTGGGCTACAAGTC----- 254
                       * *  ** **   ****           *      *     *                  

consensus_10319#1      -----AGTNGGTANCNNAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 342
consensus_10319#2      ATTTCAGCCGGTNCCCCNNGATACCTATCTCCN-A-GTTGACNTTGACCTGGAT------ 405
consensus_10319#0      -----AGCCGGTACCCCAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 256
consensus_10319#3      -----CCCCAGAATTTTTTCTCGCC-ATCGGCACAAGTTAATCATGA-ACCTACGATGTT 307
                                 *            ** ***  *  * *** *   ***     *       

consensus_10319#1      GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTA 402
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTT-CTACTACCA 315
consensus_10319#3      TGGCGTCTCGAAAGTGAAA-AAAAATAAATTAAATGCTTGAGTTTCACCT--GAAAAAAA 364
                                                                                   

consensus_10319#1      TAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTT 462
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      AGGTCGGAAGCAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGA 375
consensus_10319#3      AAACAAAAAA-------------------------------------------------- 374
                                                                                   

consensus_10319#1      TTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA----------------- 505
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      AAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCA 435
consensus_10319#3      ------------------------------------------------------------
                                                                                   

consensus_10319#1      ------------------------------------------------------------
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      GATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTT 495
consensus_10319#3      ------------------------------------------------------------
                                                                                   

consensus_10319#1      ------------------------------------------------------------
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      GTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTA 555
consensus_10319#3      ------------------------------------------------------------
                                                                                   

consensus_10319#1      ------------------------------------------------------------
consensus_10319#2      ------------------------------------------------------------
consensus_10319#0      TAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA 615
consensus_10319#3      ------------------------------------------------------------
                                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)