These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGGACGGTACTCGGTCCTCCGGATTTTCAAGGCCCCCGGGGGCGCACCGGACACCAGCGCAGACAGTGCTGGTGCTCTTCCAGGCCAGCTGGACCCTACCTCCGGCTGAACCGTTTCACAGGTGTTGCGCAGGGCACGTTAAGCAAGAAAAGATAACTCTTCCCGAGGCACCCCGCCGGCGTCTCCAGGACTTCACTAACGTCAGCACAGTCAACACAGCACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGCGCAGTGTCGCAGCTCTCTGCACGGGGTTACCCCGTCCACTTAGGATCAGGCATTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCCGGCTCGCGCCCCGGTTTTCCGCG] [+] EMBL BI796946 [TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGGACGGTACTCGGTCCTCCGGATTTTCAAGGCCCCCGGGGGCGCACCGGACACCAGCGCAGACAGTGCTGGTGCTCTTCCAGGCCAGCTGGACCCTACCTCCGGCTGAACCGTTTCACAGGTGTTGCGCAGGGCACGTTAAGCAAGAAAAGATAACTCTTCCCGAGGCACCCCGCCGGCGTCTCCAGGACTTCACTAACGTCAGCACAGTCAACACAGCACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGCGCAGTGTCGCAGCTCTCTGCACGGGGTTACCCCGTCCACTTAGGATCAGGCATTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCCGGCTCGCGCCCCGGTTTTCCGCG] consensusID : consensus_1032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAACCAGCAGCAGACGTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCTGAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCAGAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCCCAGTCAACCAGCCACAGTCCCAGGCTCAGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCATGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCAGGGCTCGCGCCACTGGGTTTTGCG] [+] EMBL BI807324 [CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAACCAGCAGCAGACGTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCTGAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCAGAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCCCAGTCAACCAGCCACAGTCCCAGGCTCAGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCATGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCAGGGCTCGCGCCACTGGGTTTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1032#0 TTGCCAGAGCATGGTTCACCGTTGGAGACCTGATGCTGTTATGAGTACGACCGGGCTTGG 60 consensus_1032#1 ------------------------------------------------------------ consensus_1032#0 ACGGTACTCGGTCCTCC---GGATTTTCAAGGCCC---CCGGGGGC-GCACC-GGACA-C 111 consensus_1032#1 CTGGTACTCNGGTCACTCCAGGATTTTCAAGGCACAGCCAGGGGGCAGCACCAGGACAAC 60 ******* * * * ************* * * ****** ***** ***** * consensus_1032#0 CAGC-GCAGACAGTGCTGGTGCTCTTCCAGG-CCAGCTGGACCC----TACCTCCGG-CT 164 consensus_1032#1 CAGCAGCAGAC-GTGCAGGTGCTCTTCCAGGTCCAGCTGGACACACTACACTCACAGTCT 119 **** ****** **** ************** ********** * ** * * ** consensus_1032#0 GAACCGTTTCACAGGTGTTGCGCAGG-GCAC-GTTAAGCAAGAAAAGATAACTCTTCCCG 222 consensus_1032#1 GAACCAAGTTTCCAGGGTTAGTCAGGTGCACAGTTAAGCAAGAAAAGATAACTCTTCCCA 179 ***** * * * *** **** **** *************************** consensus_1032#0 AGGCACCCCGC----CGGCGTCTC-CAGGAC-TTCACTAACGTCAGCACAGTCAACACAG 276 consensus_1032#1 GAGGCCCACACAGCACGGCGTCTCACAGGACATTCACTAACGTCC---CAGTCAAC-CAG 235 * ** * * ********* ****** ************ ******** *** consensus_1032#0 CACACAGTCACCAGGCTCAGGGAAATCTTAACCCAGATTCCCATTTCAGGGGCACAGC-G 335 consensus_1032#1 C-CACAGTC-CCAGGCTCAGGGAAATCTTAACCC-GATTCCC-TTTCAGGGGCACAGCAG 291 * ******* ************************ ******* *************** * consensus_1032#0 CAGTGTC-GCAGCTCTCTGCACGGGGTTACCCC-GTCCACTTAGGATCAGGCATTACCCA 393 consensus_1032#1 CAGTGTCAGCAGCTCTCTGCCAGGGGTTACCCCAGTCCACTTAGGATCAGGCTTACACCA 351 ******* ************ *********** ****************** * *** consensus_1032#0 TGTGCAAGTGC-CGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTG 452 consensus_1032#1 TGTGCAAGTGCACGTTCACATGGAACCTTTCTCCTCTTCGCACTTCAAAGTTCTCATTTG 411 *********** ************************************************ consensus_1032#0 AATATTTGCTACTACCACCAAGATCTGCACCGACGCCAGCTCCGCCC--GGCTCGCGCCC 510 consensus_1032#1 AATATTTGCTACTACCACCAAGATCTGCACCGACGCC-GCTCCGCCCAGGGCTCGCGCCA 470 ************************************* ********* ********** consensus_1032#0 CGGTTTTCCGCG 522 consensus_1032#1 CTGGGTTTTGCG 482 * * ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||