cluster # 10323

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Oryza sativa
cluster # 10323 cluster # 10323 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10323#0 length = 690 sequences # 5

consensus_10323#1 length = 369 sequences # 1
consensus_10323#2 length = 141 sequences # 1

consensusID : consensus_10323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 690
fasta sequence

                              [CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCTAAGGATTTCACA-AATCAAA-------GATAAAGGATTCCCGAACA-AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA-AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC-GAATCG-TTGCAATTGATGTTCGATCTCGAAGAGAA-GGAAGAGATCTT-CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT-TTTAAGGAAGGCGGAATTCTTTAAAAAAAAAGAAAGAACTTTGAGTTAATTGAAGAATGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTATTGTGGTGTTGCAGCGCCTATTAAAAAAAAAA]

[+] EMBL AU162039             [CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCCAAGGATTTCACA AATCAAA       GATAAAGGATTCCCGAACA AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT TTTAAGGAAGGCGGAATTCTTTAAAGAAAAAGAAAGAACTTTGAGTTAATTGAAGAATGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTATTGTGGTGTTGCAGCGCCTATTAAAAAAAAAA]
[+] EMBL AU101294             [                         AAGAATTCCCGAAGTAATGTTTAAACCTAAGGATTTCACA AATCAAA       GATAAAGGATTCCCGAACA AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATCGGAATCG TTGCAATGGATGTTCGATCTCGAAGAGAAGGGAAGAGATCTTCCGAAAAGTAGG TTTTATGATCC                                                                                                                                                                                                                                  ]
[+] EMBL BM421963             [                                            TTTAAACCTAAGGATTTCACACAATCAAAGATAAAGGATAAAGGATTCCCGAACACAGTAAACACGATTTTCAACTGTCTCAACCATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCACAAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCCAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGC AGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCC ATAAGCTGTCTATC GAATCGCTTGC ATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACAGTTTCTGATATCCTTAAGGAAGGCGGAATTCTTTAAAAAAAA                                                                                                            ]
[+] EMBL AU174932             [                                                                                                                                            CCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACAGTTTNTGATAT TTTAAGGAAGGCGGAATTCTTTAAAAAAAA                                                                                                            ]
[+] EMBL AU101295             [                                                                                                                                                AATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT TTTAAGGAAGGCGGAATTCTTTAAA                                                                                                                 ]




>consensus_10323#0
CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCTAAGGATT
TCACAAATCAAAGATAAAGGATTCCCGAACAAGTAAACACGATTTTCAACTGTCTCAACA
ATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCAAAGAAAAG
AGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAA
ATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATG
CAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTT
TGTTTATCTACATCTATCCCAATAAGCTGTCTATCGAATCGTTGCAATTGATGTTCGATC
TCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAAC
TTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAAC
CGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAAAAAAAGAAAGAACTTTGAGTTA
ATTGAAGAATGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTATT
GTGGTGTTGCAGCGCCTATTAAAAAAAAAA

consensusID : consensus_10323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAAACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTTCACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCCACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAGAAAAAAAAAA]

[+] EMBL BI800586             [CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAAACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTTCACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCCACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAGAAAAAAAAAA]




>consensus_10323#1
CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAAACGAAACTAATGACTATTCA
TGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTTCACATGAAATTAGAGGAATG
TTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCCACCCAGCTGTCTATCGAATC
GTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTAT
GATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAA
GGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAGA
AAAAAAAAA

consensusID : consensus_10323#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence

                              [TGAATTGAAGAACTGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTATTGTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATGTGCGCATTGTTTGCTANNAAANA]

[+] EMBL AU058297             [TGAATTGAAGAACTGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTATTGTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATGTGCGCATTGTTTGCTANNAAANA]




>consensus_10323#2
TGAATTGAAGAACTGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNAT
TATTGTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATGTG
CGCATTGTTTGCTANNAAANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10323#0      CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCTAAGGATT 60
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      TCACAAATCAAAGATAAAGGATTCCCGAACAAGTAAACACGATTTTCAACTGTCTCAACA 120
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      ATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCAAAGAAAAG 180
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      AGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAA 240
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      ATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATG 300
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      CAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTT 360
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ------------------------------------------------------------
                                                                                   

consensus_10323#0      TGTTTATCTACATCTATCCCAATAAGCTGTCTATCGAATCGTTGCAATTGATGTTCGATC 420
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      --------------------CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAA 40
                                                                                   

consensus_10323#0      TCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAAC 480
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      ACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTT 100
                                                                                   

consensus_10323#0      TTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAAC 540
consensus_10323#2      ------------------------------------------------------------
consensus_10323#1      CACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCC 160
                                                                                   

consensus_10323#0      CGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAAAAAAAGAAAGAACTTTGAGTTA 600
consensus_10323#2      ---------------------------------------------------------TGA 3
consensus_10323#1      ACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATC 220
                                                                                   

consensus_10323#0      ATTGAAGAA--TGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTA 658
consensus_10323#2      ATTGAAGAAC-TGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTA 62
consensus_10323#1      TTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTA 280
                        * *** *    *  **       * ** *  * *   * ***  * *    *     **

consensus_10323#0      TT----GTGGTGTTGCAGCGCCTATTAAAAAAAAAA------------------------ 690
consensus_10323#2      TT----GTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATG 118
consensus_10323#1      TTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGG 340
                       **     *    *** *     *  *                                  

consensus_10323#0      -----------------------------
consensus_10323#2      TGCGCATTGTTTGCTANNAAANA------ 141
consensus_10323#1      AAGGCGGAATTCTTTAAAGAAAAAAAAAA 369