These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 690 fasta sequence [CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCTAAGGATTTCACA-AATCAAA-------GATAAAGGATTCCCGAACA-AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA-AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC-GAATCG-TTGCAATTGATGTTCGATCTCGAAGAGAA-GGAAGAGATCTT-CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT-TTTAAGGAAGGCGGAATTCTTTAAAAAAAAAGAAAGAACTTTGAGTTAATTGAAGAATGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTATTGTGGTGTTGCAGCGCCTATTAAAAAAAAAA] [+] EMBL AU162039 [CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCCAAGGATTTCACA AATCAAA GATAAAGGATTCCCGAACA AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT TTTAAGGAAGGCGGAATTCTTTAAAGAAAAAGAAAGAACTTTGAGTTAATTGAAGAATGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTATTGTGGTGTTGCAGCGCCTATTAAAAAAAAAA] [+] EMBL AU101294 [ AAGAATTCCCGAAGTAATGTTTAAACCTAAGGATTTCACA AATCAAA GATAAAGGATTCCCGAACA AGTAAACACGATTTTCAACTGTCTCAACAATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATCGGAATCG TTGCAATGGATGTTCGATCTCGAAGAGAAGGGAAGAGATCTTCCGAAAAGTAGG TTTTATGATCC ] [+] EMBL BM421963 [ TTTAAACCTAAGGATTTCACACAATCAAAGATAAAGGATAAAGGATTCCCGAACACAGTAAACACGATTTTCAACTGTCTCAACCATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCACAAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCCAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGC AGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCC ATAAGCTGTCTATC GAATCGCTTGC ATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACAGTTTCTGATATCCTTAAGGAAGGCGGAATTCTTTAAAAAAAA ] [+] EMBL AU174932 [ CCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACAGTTTNTGATAT TTTAAGGAAGGCGGAATTCTTTAAAAAAAA ] [+] EMBL AU101295 [ AATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCA AAGAAAAGAGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAAATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATGCAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTTTGTTTATCTACATCTATCCCAATAAGCTGTCTATC GAATCG TTGCAATTGATGTTCGATCTCGAAGAGAA GGAAGAGATCTT CGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAACCGTTTCTGATAT TTTAAGGAAGGCGGAATTCTTTAAA ] consensusID : consensus_10323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAAACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTTCACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCCACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAGAAAAAAAAAA] [+] EMBL BI800586 [CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAAACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTTCACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCCACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAGAAAAAAAAAA] consensusID : consensus_10323#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [TGAATTGAAGAACTGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTATTGTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATGTGCGCATTGTTTGCTANNAAANA] [+] EMBL AU058297 [TGAATTGAAGAACTGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTATTGTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATGTGCGCATTGTTTGCTANNAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10323#0 CTACTCTTTTGAAAGAAAACNGAATAAGAATTCCCGAAGTAATGTTTAAACCTAAGGATT 60 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 TCACAAATCAAAGATAAAGGATTCCCGAACAAGTAAACACGATTTTCAACTGTCTCAACA 120 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 ATAGAATTGGACCGGAATAAGGAATAAAAGTGAATTTGTTCGAGATGAGGCAAAGAAAAG 180 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 AGTTTAGAGACGACTCAAAAAATTTCAAAGGATTTTTTTCTTTCAAGTCTGTCAATCAAA 240 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 ATTAGTCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTACGGAAATTAATG 300 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 CAAGTCATATTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGCTT 360 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ------------------------------------------------------------ consensus_10323#0 TGTTTATCTACATCTATCCCAATAAGCTGTCTATCGAATCGTTGCAATTGATGTTCGATC 420 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 --------------------CCATAGATACCCCAACCCAAGTTTGAATTAGTATACCAAA 40 consensus_10323#0 TCGAAGAGAAGGAAGAGATCTTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCAAAC 480 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 ACGAAACTAATGACTATTCATGATTCCATCCATATTGGATCAATTCCCTATGAACCCTTT 100 consensus_10323#0 TTGTTTAAATGTTCCAGCTATTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACAAGAAC 540 consensus_10323#2 ------------------------------------------------------------ consensus_10323#1 CACATGAAATTAGAGGAATGTTATGTTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCC 160 consensus_10323#0 CGTTTCTGATATTTTAAGGAAGGCGGAATTCTTTAAAAAAAAAGAAAGAACTTTGAGTTA 600 consensus_10323#2 ---------------------------------------------------------TGA 3 consensus_10323#1 ACCCAGCTGTCTATCGAATCGTTGCCATTGATGTTCGATCTCGAAGAGAAGGAAGAGATC 220 consensus_10323#0 ATTGAAGAA--TGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTAATTA 658 consensus_10323#2 ATTGAAGAAC-TGCGTTGGGAGCTCTATGAGAACTATGAATTGCGTGAGAAATTTNATTA 62 consensus_10323#1 TTCGAAAAGTAGGTTTTTATGATCCGATAAAGAATCCAACTTGTTTAAATGTTCCAGCTA 280 * *** * * ** * ** * * * * *** * * * ** consensus_10323#0 TT----GTGGTGTTGCAGCGCCTATTAAAAAAAAAA------------------------ 690 consensus_10323#2 TT----GTGGTGTTGCAGCGCCTATTATTTGGTCTCTGTCCCANGTTTATTATTTGCATG 118 consensus_10323#1 TTCTCTATTTCCTTGAAAAAGGTGCTCAACCTACACAGAACCGTTTCTGATATTTTAAGG 340 ** * *** * * * consensus_10323#0 ----------------------------- consensus_10323#2 TGCGCATTGTTTGCTANNAAANA------ 141 consensus_10323#1 AAGGCGGAATTCTTTAAAGAAAAAAAAAA 369 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||