These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 3183 fasta sequence [CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCTTGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATACACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAAGCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAACTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGCAACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGTGCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACTATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTCTAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCATTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTAAACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCTTCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTTTCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATCAATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGATAAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTAAGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTAAAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGCGAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCCTTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCACAGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCAATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACGAATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGAACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGTGATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTAACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTTCAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTGTATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTCAGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTCATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTTCTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAGATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGACCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACTTCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACATTT] [+] EMBL AK101123 [CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCTTGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATACACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAAGCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAACTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGCAACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGTGCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACTATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTCTAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCATTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTAAACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCTTCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTTTCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATCAATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGATAAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTAAGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTAAAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGCGAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCCTTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCACAGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCAATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACGAATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGAACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGTGATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTAACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTTCAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTGTATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTCAGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTCATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTTCTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAGATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGACCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACTTCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACATTT] [+] EMBL AU166358 [ ATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTATGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTACTTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAAaaa ] consensusID : consensus_10325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1859 fasta sequence [CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAGCCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCACCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGGGTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGCAGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGCGGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA-AAAACAGAGCATGAACTTCA-TAAAGATGACAGCAAA-GGGCAT-GGGCATTAT-GATTCTG-TTTCCAGTCTG-CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGCTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA] [+] EMBL AK066242 [CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAGCCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCACCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGGGTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGCAGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGCGGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT GGGCGTTAT GATTCTG TTTCCAGTCTG CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGCTCGTAATGACAAATTTGATGAT ] [+] EMBL CB674414 [ CGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCCAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT ] [+] EMBL C26109 [ AATNAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGTCGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTTTCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGAGCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGAAGAGTCGAGGAAGGCTGTTCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAAAAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAANAAACCAGGGCATGGACTTCATTAAGGTTGNCAGCAAAGGGGCATGGGGCATTTTGGATTCTGTTTTCCAGTCTGNCCTTTTTGGGTCTTCCCTTA ] [-] EMBL CB674415 [ GTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCATGCAAGCCAA AAAACAGAGCATGAACTTCA TAAAGATGACAGCAAA GGGCAT GGGCATTAT GATTCTG TTTCCAGTCTG CCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAGGTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA] consensusID : consensus_10325#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC] [-] EMBL CF322496 [TGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTCTGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCATTTTGGGACTATTGGTTAGGACTTCAGCTTTTCCCCTATGATGAGCCATATAGATGGCCCCGAGAAAAAGATGGCCAACGAAAAAATCGTGGACACCATTAGGAGAAAACAAGAGGTTAGTGAATTGGATGGCATTAGCACCCAGTACTATATATCTCTATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGCTCCTCCCATTTTCTTATCTCTTTGAGGTGATTAGTGATTACACAGACCAACAACTGAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTG 60 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCGTTGAGCTTGCTAGA 120 consensus_10325#1 -----CCTCCCCTCTCCCTCCGCTCCGGCGGAGCGCCGCGAAACGCCCGCCGCAACCGAG 55 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATGCTGCTAATTATCTT 180 consensus_10325#1 CCCACCGTCGAGGCGATCGGCGGCGGAGGCGAGGGCCGCCGCCTTCCGTCGCAGGGGTCA 115 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGAACCAAGGGGGTCCT 240 consensus_10325#1 CCTTCTTCGTCCTCCCCCGGTCTCCCCCTGGGAAGCTGCCCGCCATGTTCCGACCACCGG 175 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGAAATCCAAGAGAAAT 300 consensus_10325#1 GTGCTTTCGGGGTCGCACCCCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCAGCCATGGC 235 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCCAGAAGGAGCATGCA 360 consensus_10325#1 AGTGGCAGCCGCCTTTCCAGCCGCCGGCCGCTACATCCTTTTGGCAGCGGGACAATGTGC 295 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGCAAATAGCCAAGGAC 420 consensus_10325#1 GGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTGATAAATGAGC 355 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAAGAAAAAAGCAAATGAGGAA 480 consensus_10325#1 TCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGT 415 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AGAAAGCGTCTAGAATCTGAGGTAAAGTTAATGCTTACATTGTGGTGTGGAAATCCTGCT 540 consensus_10325#1 CTTCAGCAAAATTGTCATCAGAGCCTGATGGTTCTTCTGCAGATAGGCCCCGGCATTTCG 475 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TGTCTGTGGACATCTGCGTGGAAATTGTGAGCGCTATGTTTCATTAATTCATTTTCATAC 600 consensus_10325#1 TTGAGCTTGCTAGAGCTATGAAGATTAGTCAAGACACTCATGAGTCTCTGGCCACAGATG 535 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ACTGCTGAATTACTATACATTGTGATACCTTGAGTTATGAATTTTGTTAAGTTGTAGTAA 660 consensus_10325#1 CTGCTAATTATCTTTGTTCTCAGATTCAGAACCTTCTTGCACCTATTTATCCTGCTGTGA 595 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GCATTAAGTTACACCATTTTTTATCTTTGACCTTATCTGATTTTCTACGAATTTAGGAAA 720 consensus_10325#1 ACCAAGGGGGTCCTTGGGAAGAGAGGTATGCAATGATTAGGTTAGCTCAGAAGCTGCAGA 655 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CTCTATAAGCTTGCTTCTAAAATTTCTTAAAGTCTTGTATATTTGTGTTTGATATGCTGC 780 consensus_10325#1 AATCCAAGAGAAATAAGCGATGGAGAAAGAGAAAAAGAAAGCATGTTGCAGAGCTTTTCC 715 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AACCCAACATCTTCAATTACACCACCTACCTACCTGTTTTCTTTCATTCAGAATTATTGT 840 consensus_10325#1 AGAAGGAGCATGCAGATTATGACAGAATTGATCAGGAAGCTGATGAATGGAGGGCTAGGC 775 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GCAATCAGTTTGTGAATTCTTGAGTGGTTATTTCAGTATGTTATATTTAGATTCCAAACT 900 consensus_10325#1 A-----AATAGCCAAGGACATGGCGCAGCGCAAGGTGGAAAACATGAAGCAGATTGCCAA 830 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ATTAATATTCTCTGTAGAAATTGTAAATTCAAGAGCGGCAAATACAATAGTCTTGTTTTC 960 consensus_10325#1 GAAAAAAGAAAATGAGGAAAGAAAGCGTCTAGAATCTGAGCTTGAGCTTGCCCTAATGGT 890 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TAGAAAACTAATTTTCTCAATACAAATCTTCTATTTTCAGCTTGAGCTTGCCCTAATGGT 1020 consensus_10325#1 CGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTT 950 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CGAGAAACTACAGGAGCTTCGCTCTATGAGAGTTCAAAAAATGAAGAAACAAGGTCATTT 1080 consensus_10325#1 TCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGA 1010 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TCTGCCAGAAGAAGATGATAAATATCTTGAGCGTGTTAAGGCTGCAGTTGAGGAAGAGGA 1140 consensus_10325#1 GCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGA 1070 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GCGCCAAGCTGCAAGTGCTGCTCGGACTGATGCTGCCAAGGATGCTATTCTGACCGCGGA 1200 consensus_10325#1 AGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAA 1130 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AGAGTCGAGGAAGGCTGTGCAGTGTTCAAATTCAAGAGAAGATGATTCTGATCAAGCCAA 1260 consensus_10325#1 AAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCA 1190 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AAGTGCACCAACACTGGAACAAAACCAGAGAGATCCAGGAATAAGCGGCAGAAATCATCA 1320 consensus_10325#1 TGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTA 1250 consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TGCAAGCCAAAAAACAGAGCATGAACTTCATAAAGATGACAGCAAAGGGCATGGGCATTA 1380 consensus_10325#1 TGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGA 1310 consensus_10325#2 ---------------------------------------------TGGAAGCAGCTACGA 15 consensus_10325#0 TGATTCTGTTTCCAGTCTGCCTTTTGAGTTCTACCATTATTATCATGGAAGCAGCTACGA 1440 *************** consensus_10325#1 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 1370 consensus_10325#2 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 75 consensus_10325#0 CATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG 1500 ************************************************************ consensus_10325#1 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 1430 consensus_10325#2 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 135 consensus_10325#0 CCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTA 1560 ************************************************************ consensus_10325#1 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 1490 consensus_10325#2 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 195 consensus_10325#0 TTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTGTAATGAATTTAATCTTCTTC 1620 ************************************************************ consensus_10325#1 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCAT-----TTTGGG--ACTAT 1543 consensus_10325#2 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGCTGCAT-----TTTGGG--ACTAT 248 consensus_10325#0 TGCCTAACCACTGGAAGTTTTCAAGGTTATCACAAGGCAAGTAGGTGTTTGAGTTGCTAC 1680 ************************************ * **** * *** consensus_10325#1 TGGTTAGGACT----TCAGCTTTTCCCCTA------TGATGAGCCATATAG---ATGGCC 1590 consensus_10325#2 TGGTTAGGACT----TCAGCTTTTCCCCTA------TGATGAGCCATATAG---ATGGCC 295 consensus_10325#0 TTTTTCCCCTTCATGTCAACTATTAATGCAGAAATTTGATTTAATATGTAGCCAATTGCA 1740 * ** * *** ** ** * **** ** *** ** ** consensus_10325#1 CCGAGAAAAA----GATGGCCAACGAAAA---AATCGTGGACACCATTAG-----GAGAA 1638 consensus_10325#2 CCGAGAAAAA----GATGGCCAACGAAAA---AATCGTGGACACCATTAG-----GAGAA 343 consensus_10325#0 TTGATGAAAATTAAATTGACTAAGCAAAGTTCAATTGCTTGCACTATGAACCCTCAGTTA 1800 ** **** ** * ** *** *** * *** ** * * consensus_10325#1 AACAAGAGGTTAGTGAATTGGATGGCATTAGC-ACCCAGTA-------CTATATATCTCT 1690 consensus_10325#2 AACAAGAGGTTAGTGAATTGGATGGCATTAGC-ACCCAGTA-------CTATATATCTCT 395 consensus_10325#0 AACACTTAATTATCTTATGGTTTCACATGAGTTATCCAATATAAGGCCCTGTGAGTTTCT 1860 **** *** ** * * *** ** * *** ** ** * * *** consensus_10325#1 ATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGC 1750 consensus_10325#2 ATAATAGAGTAATAAGGACACGGCATAATGCCTGCTGCCTTTCTTGTTGTGCTTGCTTGC 455 consensus_10325#0 TCACCAGCATAAACACTAAAAAAAATATTACGAAGAAATTGTGTTCCGGTCTATGCTTTT 1920 * ** *** * * * *** * * * * ** ** ***** consensus_10325#1 TCCT---CCCATTTTCTTATCTCTTTGAGGTGATT-AGTGATTACACAGACCAACAACTG 1806 consensus_10325#2 TCCT---CCCATTTTCTTATCTCTTTGAGGTGATT-AGTGATTACACAGACCAACAACTG 511 consensus_10325#0 TCCAGGATGTCTTTTTGCACATCCATGATACGCTCCACTTATGGTCTGAAAATTTTAATC 1980 *** **** * ** *** * * * * ** * * * consensus_10325#1 AATCCTAAAGCTCGTAATGACAAATTTGATGATACTTGCAATTAATAAAAAGA------- 1859 consensus_10325#2 AATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTC----------------------- 548 consensus_10325#0 AATTTTGTTGACTGTGGGGCAAGATTGATACTGTCAGTGACCCAGTCCTGAACTTCTGAT 2040 *** * * * * consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AAGTGATAACCACTTCTGCAGTCTTGAGTCACCATTGTAGTTCAAATGTGTTGCTTTGTA 2100 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AGTTCTATGTAATCAAGTACTAAACATTGGAAACACCATTAAACTTCTTTGCCTTCTCTA 2160 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AAGAGAACTTATTGTAGTTCATGCCAAGGACCAAATTGGATGTATACAATTCAGCCTTGC 2220 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GAACTCGTTTTATATTCGGAATCAAGAAAAAATGAAGAAAAATGCTAGAATGGGCATCCC 2280 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TTTTCTGATAATGGTATGCAGACATGGTGGAGGCTTTTCTATGTGATGATTACTGGCCAC 2340 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AGGTCCTTTTCTGATCTGTTGAGTAGTTCATGACAACTACCAGATCGTGACTCAAAATCA 2400 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ATGGGATTTTACATATTAGATCAACCAGTGTTGTTCCTATCCACTGCTCTAATTGTTACG 2460 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AATGCATGGAGACATCATGTTATACTTATGTACCAATCTGTTCTTATGGTGTTGAACTGA 2520 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ACGTACAAAACTGTTGTAGGCTGTTGCTTAGACTGTAAGCTATATATTCAACAGGCTGGT 2580 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 GATATACCTTGAATAAATGTTAGGAATCGTTTGCCCCCTTCCTAATGATATTCCATAGTA 2640 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ACCTGCATCATGAATCACCACCTGAGAAATGAATAGCTTAGCATATGAGCTATAATGTTT 2700 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CAGCATTTGATCAAACTCCCAGTTCAGCCCAAGATTATCTTGAAATCTAAAACACTGTTG 2760 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TATGAAAATTACATATTCATAACATAACCTTAGTATTAATTATAGTTATAGTGTTTATTC 2820 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 AGTTAGTACCACAATACCAGTTAAATTTTACCCTATATATCTCTTTAATATGAGGTTTTC 2880 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ATTGAATATTTATCTACGATGCAATCGGTCCTGAGAGCACTTTAAAAAAATATATATGTT 2940 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CTACTTTGTTTAAAGTTTCTGAGAAGCTTTGTGTTTGTTGGATCAGATACCCTGGTGAAG 3000 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 ATTTAAACCGAGGAATGTTTTGGATTCAATTTTCTGAGTAAGATAGGACTAAGAAGTGGA 3060 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 CCGGCAAATCTAGACTTGGAACTGTATCTAGCAATAGTCAACAGATACGAGCAAATAACT 3120 consensus_10325#1 ------------------------------------------------------------ consensus_10325#2 ------------------------------------------------------------ consensus_10325#0 TCATAACATGATAGCTTAGATGAATAGCGGATTTGTTCTTTAGCTTATCATTTCAATACA 3180 consensus_10325#1 --- consensus_10325#2 --- consensus_10325#0 TTT 3183 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||