Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10350 cluster # 10350       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10350#0 length = 2731 sequences # 6  
consensus_10350#1 length = 289 sequences # 1  

consensusID : consensus_10350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2731
fasta sequence
                              [TCGTCGTCTCGCGTCTCTTCTCTCAACCGCGACCGCATCTCGCCGCCCGCCGCCGCCCTGACGCGCCGCCTCCTTCCCTCCGCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTTAGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTCCTGAGGTCCGCAAAACGACGCGTGGTCGCCGCCGCGGCGGTCTCCGCCGCCCTGACGCGCCGCCTCCTTCC---CTCC-GCAAC-GCCCGACCCCCCGGAT----TTCC-CAC----TCTTCGGGTAGACAAGGAGGTTTCTGTGTTGTATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACACTGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGATTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAACCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAATTCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGGCCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATACGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGCATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATGTATGCAAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGTTTGGGATGTCTTCCTGTATGAGGTCAGAATCTTGCCCGCCATATAATTGTTCTGTTTACTTTTTATCTGAGGTTATGAGCTAAGATTGACTGATTTTCAAGGCACAATTTATTCTAATACATTATGATTATAGTTTTAGATCCCATGCAATAACATTCTTAACTAACGAATAATAAGCATCTATTACTGATTTACTGTTTTAAAGTTGTACCTAATGAAATTATGTAGCCTAATGGAGGGTGCTATATCCAGTTGATTATTATCAATAGCGGGGTTTGTTTGAGCTTACATCTGATTGACCGACTTGAATGCACCTTAAAAGTAAATTCTCTGATGGGTTGTACGCTGTGCAATTGCAATATACGAACCACAGAAAAAACAGTTTTTAGTAGCTAGTTAACACCTTTAATTGCCCAGTTCCTTGTAGCACTGTTGTCCAATCTGGATTCTCAAATTACTGATCACTAGTTGGACTGAACATTTTATTAAATATTTTTACTATATATGAAATAAACTCGTGTATGCATAGAGCATAGTGAGTCAATAGCTGGCTCTTGAGGTGTCTTTGATTTCTCCAATGTGCATAACCAAACGCCAGGAGCAGCTTGCTATCAGGCTGTCTTTCTTTTTCTCCTTTTGTTCAATTTCTGGCGAGATGCAAAGGTGGAGGAAGGAGTTTGGGTTGAAATTTAACTTGGGTTTCACTGGTTTATTGAAGCCAATCTCATAACTATCTGATTGCTGGTCTGGCTGGCCCACATAGCACTGCCATTGTACTATGCACTCTGGAGAAAATCTCATACTGGTGCTTGTGTTTTCATTTTTATTATATCTTCAAGTCAATTATTATATCTTCAGGCTAAGATAATTTTTTTATATGAATGGTCATTGTTCTTTCCTATAAGCATATACTTGTAAAGTGCAATTGAACTCATTTAATTTCCATCTACTGGTCTTCTTGATGCAAGATTAAAAAAAAAAATACTGATTACTGTGTCATTGTTATCTACAGGGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTATTATTGCCAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATT-CGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACCAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCAATTGTAAATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAATAAAAA]

[+] EMBL AK099868             [TCGTCGTCTCGCGTCTCTTCTCTCAACCGCGACCGCATCTCGCCGCCCGCCGCCGCCCTGACGCGCCGCCTCCTTCCCTCCGCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTTAGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTCCTGAGGTCCGCAAAACGACGCGTGGTCGCCGCCGCGGCGGTCTCCGACGACCCGAGGCGTCGCTTCGTCCCCGACTCCGGCGGCAGCTGGAGGCCCCGAATACAATTCCTCACCGGATCGTAAGGTAGACAAGGAGGTTTCTGTGTTGTATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACACTGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGATTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAACCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAATTCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGGCCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATACGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGCATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATGTATGCAAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGTTTGGGATGTCTTCCTGTATGAGGTCAGAATCTTGCCCGCCATATAATTGTTCTGTTTACTTTTTATCTGAGGTTATGAGCTAAGATTGACTGATTTTCAAGGCACAATTTATTCTAATACATTATGATTATAGTTTTAGATCCCATGCAATAACATTCTTAACTAACGAATAATAAGCATCTATTACTGATTTACTGTTTTAAAGTTGTACCTAATGAAATTATGTAGCCTAATGGAGGGTGCTATATCCAGTTGATTATTATCAATAGCGGGGTTTGTTTGAGCTTACATCTGATTGACCGACTTGAATGCACCTTAAAAGTAAATTCTCTGATGGGTTGTACGCTGTGCAATTGCAATATACGAACCACAGAAAAAACAGTTTTTAGTAGCTAGTTAACACCTTTAATTGCCCAGTTCCTTGTAGCACTGTTGTCCAATCTGGATTCTCAAATTACTGATCACTAGTTGGACTGAACATTTTATTAAATATTTTTACTATATATGAAATAAACTCGTGTATGCATAGAGCATAGTGAGTCAATAGCTGGCTCTTGAGGTGTCTTTGATTTCTCCAATGTGCATAACCAAACGCCAGGAGCAGCTTGCTATCAGGCTGTCTTTCTTTTTCTCCTTTTGTTCAATTTCTGGCGAGATGCAAAGGTGGAGGAAGGAGTTTGGGTTGAAATTTAACTTGGGTTTCACTGGTTTATTGAAGCCAATCTCATAACTATCTGATTGCTGGTCTGGCTGGCCCACATAGCACTGCCATTGTACTATGCACTCTGGAGAAAATCTCATACTGGTGCTTGTGTTTTCATTTTTATTATATCTTCAAGTCAATTATTATATCTTCAGGCTAAGATAATTTTTTTATATGAATGGTCATTGTTCTTTCCTATAAGCATATACTTGTAAAGTGCAATTGAACTCATTTAATTTCCATCTACTGGTCTTCTTGATGCAAGATTAAAAAAAAAAATACTGATTACTGTGTCATTGTTATCTACAGGGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCGCAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATT CGTTCATCTCTCTGTTATATTA                                                                                                                                                                             ]
[+] EMBL CB662320             [                                                                                                                                                                                                                 CGCCGCCCTGACGCGCCGCCTCCTTCC   CTCC GCAAC GCCCGACCCCCCGGAT    TTCC CAC    TCTTCGGGTAGACAAGGAGGTTTCTGTGTTGTATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACACTGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGATTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAACCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAATTCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGGCCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATACGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGCATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCAGGCTGGTTTGCCGCTTGTGCAGCAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB662321             [                                                                                                                                                                                                                 CGCCGCCCTGACGCGCCGCCTCCTTCC   CTCC GCAAC GCCCGACCCCCCGGAT    TTCC CAC    TCTTCGGGTAGACAAGGAGGTTTCTGTGTTGTATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACACTGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGATTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAACCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAATTCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGGCCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATACGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGCATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTATCANGCTGGTTTGCCGCTTGTGCAGCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BE230692             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTATTATTGCCAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATTCCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACAAAAGGTGCAGATGCATCGTCAA                                                                                                           ]
[+] EMBL BM421037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gcgtccgGGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTATTATTGCCAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATT CGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACCAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCAATTGTAAATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAATAAAAA]
[+] EMBL BM038995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTA CCGTGCCTTAAGCAACTTTACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATT CGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCA CAAAGGTGCAGATGCATCGTC ACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCAATTGTAAATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAAAAAAA ]


>consensus_10350#0 TCGTCGTCTCGCGTCTCTTCTCTCAACCGCGACCGCATCTCGCCGCCCGCCGCCGCCCTG ACGCGCCGCCTCCTTCCCTCCGCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTTA GAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTCCTGAGGTCCGCAAAA CGACGCGTGGTCGCCGCCGCGGCGGTCTCCGCCGCCCTGACGCGCCGCCTCCTTCCCTCC GCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTAGACAAGGAGGTTTCTGTGTTGT ATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACAC TGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACA GGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAA ACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGA TTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAA CCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAAT TCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGG CCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATA CGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGC ATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTA TCAGGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGA GCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATGTATGC AAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGT TTGGGATGTCTTCCTGTATGAGGTCAGAATCTTGCCCGCCATATAATTGTTCTGTTTACT TTTTATCTGAGGTTATGAGCTAAGATTGACTGATTTTCAAGGCACAATTTATTCTAATAC ATTATGATTATAGTTTTAGATCCCATGCAATAACATTCTTAACTAACGAATAATAAGCAT CTATTACTGATTTACTGTTTTAAAGTTGTACCTAATGAAATTATGTAGCCTAATGGAGGG TGCTATATCCAGTTGATTATTATCAATAGCGGGGTTTGTTTGAGCTTACATCTGATTGAC CGACTTGAATGCACCTTAAAAGTAAATTCTCTGATGGGTTGTACGCTGTGCAATTGCAAT ATACGAACCACAGAAAAAACAGTTTTTAGTAGCTAGTTAACACCTTTAATTGCCCAGTTC CTTGTAGCACTGTTGTCCAATCTGGATTCTCAAATTACTGATCACTAGTTGGACTGAACA TTTTATTAAATATTTTTACTATATATGAAATAAACTCGTGTATGCATAGAGCATAGTGAG TCAATAGCTGGCTCTTGAGGTGTCTTTGATTTCTCCAATGTGCATAACCAAACGCCAGGA GCAGCTTGCTATCAGGCTGTCTTTCTTTTTCTCCTTTTGTTCAATTTCTGGCGAGATGCA AAGGTGGAGGAAGGAGTTTGGGTTGAAATTTAACTTGGGTTTCACTGGTTTATTGAAGCC AATCTCATAACTATCTGATTGCTGGTCTGGCTGGCCCACATAGCACTGCCATTGTACTAT GCACTCTGGAGAAAATCTCATACTGGTGCTTGTGTTTTCATTTTTATTATATCTTCAAGT CAATTATTATATCTTCAGGCTAAGATAATTTTTTTATATGAATGGTCATTGTTCTTTCCT ATAAGCATATACTTGTAAAGTGCAATTGAACTCATTTAATTTCCATCTACTGGTCTTCTT GATGCAAGATTAAAAAAAAAAATACTGATTACTGTGTCATTGTTATCTACAGGGCATTAA GGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGGTCAAATT GCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGA TGTATTATTGCCAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAA AGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCC TCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAG TGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTA AAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGT TCAACCAGTTTCCACAAGCACCAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGAT GTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCAATTGTAAATACTATCTTGGTGA ATGAGATGGAATACCTGTTGGTGAATAAAAA



consensusID : consensus_10350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence
                              [CCGCGGACGCGTGGGGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCCAATTGTAAATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAAAAAAAAAA]

[+] EMBL BM419451             [CCGCGGACGCGTGGGGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCCAATTGTAAATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAAAAAAAAAA]


>consensus_10350#1 CCGCGGACGCGTGGGGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTT GTTTTATTACACTGTAAAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTT TTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACAAAGGTGCAGATGCATCGTCAAC TTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCCAATTGTA AATACTATCTTGGTGAATGAGATGGAATACCTGTTGGTGAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10350#0      TCGTCGTCTCGCGTCTCTTCTCTCAACCGCGACCGCATCTCGCCGCCCGCCGCCGCCCTG 60
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ACGCGCCGCCTCCTTCCCTCCGCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTTA 120
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTCCTGAGGTCCGCAAAA 180
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CGACGCGTGGTCGCCGCCGCGGCGGTCTCCGCCGCCCTGACGCGCCGCCTCCTTCCCTCC 240
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GCAACGCCCGACCCCCCGGATTTCCCACTCTTCGGGTAGACAAGGAGGTTTCTGTGTTGT 300
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ATTGCAAGGACATCCTTGAGAGCTAATTGGTATGGATAAGAAGAAAGCTGTTGATGACAC 360
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TGAGCCTGGGCCAGCGCCTTCTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACA 420
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG 480
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAA 540
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGAATAAGGAAAGGAATTCCTGA 600
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TTGCCTTAGAGGACTTGTTTGGCAGTTAATTTCAGGCAGCAGGGACCTTTTGCTAATGAA 660
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CCCTGGGGTTTATGAGACACTGGTCATATACGAGACATCTGCATCAGAATTGGAAATAAT 720
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TCGTGACATATCACGTACTTTTCCATCACATATTTTCTTCCAACAGAGACATGGTCCAGG 780
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATA 840
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CGTGCAGGGAATGGGATTTTTAGCTGGCTTGCTACTTCTTTATATGAGTGAAGAAGATGC 900
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ATTTTGGTTATTAGTTGCTTTGCTGAAGGGAGCTGTTCATGCGCCAATGGAAGGTTTGTA 960
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TCAGGCTGGTTTGCCGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGA 1020
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATGTATGC 1080
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      AAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGT 1140
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TTGGGATGTCTTCCTGTATGAGGTCAGAATCTTGCCCGCCATATAATTGTTCTGTTTACT 1200
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TTTTATCTGAGGTTATGAGCTAAGATTGACTGATTTTCAAGGCACAATTTATTCTAATAC 1260
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ATTATGATTATAGTTTTAGATCCCATGCAATAACATTCTTAACTAACGAATAATAAGCAT 1320
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CTATTACTGATTTACTGTTTTAAAGTTGTACCTAATGAAATTATGTAGCCTAATGGAGGG 1380
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TGCTATATCCAGTTGATTATTATCAATAGCGGGGTTTGTTTGAGCTTACATCTGATTGAC 1440
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CGACTTGAATGCACCTTAAAAGTAAATTCTCTGATGGGTTGTACGCTGTGCAATTGCAAT 1500
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ATACGAACCACAGAAAAAACAGTTTTTAGTAGCTAGTTAACACCTTTAATTGCCCAGTTC 1560
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CTTGTAGCACTGTTGTCCAATCTGGATTCTCAAATTACTGATCACTAGTTGGACTGAACA 1620
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TTTTATTAAATATTTTTACTATATATGAAATAAACTCGTGTATGCATAGAGCATAGTGAG 1680
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TCAATAGCTGGCTCTTGAGGTGTCTTTGATTTCTCCAATGTGCATAACCAAACGCCAGGA 1740
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GCAGCTTGCTATCAGGCTGTCTTTCTTTTTCTCCTTTTGTTCAATTTCTGGCGAGATGCA 1800
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      AAGGTGGAGGAAGGAGTTTGGGTTGAAATTTAACTTGGGTTTCACTGGTTTATTGAAGCC 1860
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      AATCTCATAACTATCTGATTGCTGGTCTGGCTGGCCCACATAGCACTGCCATTGTACTAT 1920
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GCACTCTGGAGAAAATCTCATACTGGTGCTTGTGTTTTCATTTTTATTATATCTTCAAGT 1980
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      CAATTATTATATCTTCAGGCTAAGATAATTTTTTTATATGAATGGTCATTGTTCTTTCCT 2040
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      ATAAGCATATACTTGTAAAGTGCAATTGAACTCATTTAATTTCCATCTACTGGTCTTCTT 2100
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GATGCAAGATTAAAAAAAAAAATACTGATTACTGTGTCATTGTTATCTACAGGGCATTAA 2160
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGGTCAAATT 2220
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      GCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGA 2280
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TGTATTATTGCCAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAA 2340
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      AGAGTATCAGAAAAAATTAGAAGGATCCAATGCAAGCACAAGTACTAAGCGGTCTCATCC 2400
consensus_10350#1      ------------------------------------------------------------
                                                                                   

consensus_10350#0      TCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTTTACTAATAG 2460
consensus_10350#1      --------------------------------------------CCGCGGACGCGTGGGG 16
                                                                    *       *     *

consensus_10350#0      TGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTA 2520
consensus_10350#1      TGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTA 76
                       ************************************************************

consensus_10350#0      AAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGT 2580
consensus_10350#1      AAGAATGACAATTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGT 136
                       ************************************************************

consensus_10350#0      TCAACCAGTTTCCACAAGCACCAAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGAT 2640
consensus_10350#1      TCAACCAGTTTCCACAAGCAC-AAAGGTGCAGATGCATCGTCAACTTTGTAGTTCTTGAT 195
                       ********************* **************************************

consensus_10350#0      GTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCC-AATTGTAAATACTATCTTGGTG 2699
consensus_10350#1      GTTGTTTTTCTCACGCTGAAAAATTGTAAGGAATGCCCAATTGTAAATACTATCTTGGTG 255
                       ************************************* **********************

consensus_10350#0      AATGAGATGGAATACCTGTTGGTGAATAAAAA-- 2731
consensus_10350#1      AATGAGATGGAATACCTGTTGGTGAAAAAAAAAA 289
                       ************************** *****  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)