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Oryza sativa
cluster # 10353 cluster # 10353       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10353#0 length = 2283 sequences # 5  
consensus_10353#1 length = 863 sequences # 1  
consensus_10353#2 length = 260 sequences # 1  

consensusID : consensus_10353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2283
fasta sequence
                              [CTCAAATTTCTTTGCTGCAAATGCCAAGACAAAGCAGGAGGAGAAACAGTTGATTGATAAAGGTAAACCAGCATACATGTTTTCACACCCAGATACAGCGATGCAAATCCACAAATGTCCATGAAAGGTGTTGATGGGAGATCTGCAAGCAATAACCAGTTTTTTCACCAAGGTCAAAATGGTTCAATTGGATGGTTTGCAAGAAGTCCTCTGGAAGCCCCTGCCATCAATAATTTTCCTAGGCTTGATCGGTCACATAATTCAAGTCTTGGTGCACTTGCTCCTCCGATGTCTATTCCTCGCATAGACCATCCTTCAGGTGCTTCCCCGATAGGTTCCTGTACGGTAGATCCAAGGAGCAGTGCTATCAATAACGCTACATTCCAACCGATTCCAAGCTTCAAAGGTTCTTCAACTGTGAACCAAAGCATTGGAACTTCGATTCTTAAGGTGAAGAAGAATGAGGACTTAGATGGCAACTGTCCAGGTTTTGCACTTGATCCGTTTTGTGCATCAAGGCCACAGCATCAGGTGGCAATTTCAAGTGACGAGGAGCAAACCGAGTGCTTGATGTTTGAACATTCAGCACGGCATCGTGAGAATCCTCATTTTGCAAATGACAAGGGCCCAAAGAACTTTAACTTGAATGAAGCATTATCGGATGGACAGGAAGATTATCTTGTAGAACAAGATGGGGGAAGCGTTAGTAGCTTACCACAGAGTAAAGCCAGTGGGTTCCCGTGGCTCATAAAAACAACAGATACATGTACTCGCCCATCAGATTTGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAACAGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCAACATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAGGCGTTCGGGGACATTACCACTAGAACTGAGGTGGCATGTAATACGACTCAGGAGAGTGCTACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGAGGTGACAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCAAATGAAGACAATTCAGAGTCATCTGTGGTGTCACATGAATGCCATGTGGTCTCCTTACAGAACAACCATGGTAAACGCAAATTTGTCATTGATTTAGAAGTGCCTGCTTGTGAAGAAGGTGTGGCCTGGGATTTTAATCAGGAATGTTCTCCTTCTGGCAAACTTGATGTAACTCAGGAGGCTGATGATGCACATTTTACATGCACTAAAATTGCAGCAGAGAGCATTATTGCTTTGTCCATGCATGTGCCAACAATTGCAGAGACGCCTGATGATATGCTGCAGTGGTTTGCAGATCTTGCTTTATCAAGCACTGATGACCACGTTGAGCAAGCAGAAGCCCATGATTGCGTGAATAATTCCAGTGATGATGGTCTGGATTCATTTGAATCGTTGACACTGAAGCTGGAAGAGACCAAGATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGATTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAGCGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCGAAACCGGATTCTGCAAAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACAACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGAAAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTGTAGTAGAGATCTTGATGGAGTGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATTAGTTCATAAGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGAGGAAATATGGTATGATT]

[+] EMBL AK062223             [CTCAAATTTCTTTGCTGCAAATGCCAAGACAAAGCAGGAGGAGAAACAGTTGATTGATAAAGGTAAACCAGCATACATGTTTTCACACCCAGATACAGCGATGCAAATCCACAAATGTCCATGAAAGGTGTTGATGGGAGATCTGCAAGCAATAACCAGTTTTTTCACCAAGGTCAAAATGGTTCAATTGGATGGTTTGCAAGAAGTCCTCTGGAAGCCCCTGCCATCAATAATTTTCCTAGGCTTGATCGGTCACATAATTCAAGTCTTGGTGCACTTGCTCCTCCGATGTCTATTCCTCGCATAGACCATCCTTCAGGTGCTTCCCCGATAGGTTCCTGTACGGTAGATCCAAGGAGCAGTGCTATCAATAACGCTACATTCCAACCGATTCCAAGCTTCAAAGGTTCTTCAACTGTGAACCAAAGCATTGGAACTTCGATTCTTAAGGTGAAGAAGAATGAGGACTTAGATGGCAACTGTCCAGGTTTTGCACTTGATCCGTTTTGTGCATCAAGGCCACAGCATCAGGTGGCAATTTCAAGTGACGAGGAGCAAACCGAGTGCTTGATGTTTGAACATTCAGCACGGCATCGTGAGAATCCTCATTTTGCAAATGACAAGGGCCCAAAGAACTTTAACTTGAATGAAGCATTATCGGATGGACAGGAAGATTATCTTGTAGAACAAGATGGGGGAAGCGTTAGTAGCTTACCACAGAGTAAAGCCAGTGGGTTCCCGTGGCTCATAAAAACAACAGATACATGTACTCGCCCATCAGATTTGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAACAGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCAACATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAGGCGTTCGGGGACATTACCACTAGAACTGAGGTGGCATGTAATACGACTCAGGAGAGTGCTACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGAGGTGACAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCAAATGAAGACAATTCAGAGTCATCTGTGGTGTCACATGAATGCCATGTGGTCTCCTTACAGAACAACCATGGTAAACGCAAATTTGTCATTGATTTAGAAGTGCCTGCTTGTGAAGAAGGTGTGGCCTGGGATTTTAATCAGGAATGTTCTCCTTCTGGCAAACTTGATGTAACTCAGGAGGCTGATGATGCACATTTTACATGCACTAAAATTGCAGCAGAGAGCATTATTGCTTTGTCCATGCATGTGCCAACAATTGCAGAGACGCCTGATGATATGCTGCAGTGGTTTGCAGATCTTGCTTTATCAAGCACTGATGACCACGTTGAGCAAGCAGAAGCCCATGATTGCGTGAATAATTCCAGTGATGATGGTCTGGATTCATTTGAATCGTTGACACTGAAGCTGGAAGAGACCAAGATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGATTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAGCGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGGTTAGTCCACCGGCAAAACCGGATACTGCAAAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACAACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGAAAAGATGCCGACAGAAAACATCGGACTATATTTGGATTTGTAGTAGAGATCTTGATGGAGTGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATTAGTTCATAAG                                                     ]
[+] EMBL CB685629             [                                                                                                                                                                                                                                                                                                                                                                                                 AACCGATTCCAAGCTTCAAAGGTTCTTCAACTGTGAACCAAAGCATTGGAACTTCGATTCTTAAGGTGAAGAAGAATGAGGACTTAGATGGCAACTGTCCAGGTTTTGCACTTGATCCGTTTTGTGCATCAAGGCCACAGCATCAGGTGGCAATTTCAAGTGACGAGGAGCAAACCGAGTGCTTGATGTTTGAACATTCAGCACGGCATCGTGAGAATCCTCATTTTGCAAATGACAAGGGCCCAAAGAACTTTAACTTGAATGAAGCATTATCGGATGGACAGGAAGATTATCTTGTAGAACAAGATGGGGGAAGCGTTAGTAGCTTACCACAGAGTAAAGCCAGTGGGTTCCCGTGGCTCATAAAAACAACAGATACATGTACTCGCCCATCAGATTTGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAACAGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCAACATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAGGCGTTCGGGGACATTACCACTAGAACTGAGGTGGCATGTAATACGACTCAGGAGAGTGCTACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGAGGTGACAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCAAATGAAGACAATTCAGAGTCATCTGTGGTGTCACATGAATGCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB679521             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAACAGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCAATATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAGGCGTTGGGGGAGATTACCACTAGAACTGAGGTGGCATGTAATACGAATCACGAGAGTGCTACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGAGGTGATAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCAAATGAAGACAATTCATACTCATCTGTGGTGTCACATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB628019             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGAGCATTGTTGCTTTGTCCATGCATGTGCCAACAATTGCAGAGACGCCTGATGATTTGCTGCAGTGGTTTGCAGATCTTGCTTTATCAAGCACTGATGACCACGTTGAGCAAGCAGAAGCCCATGATTGCGTGAATAATTCCAGTGATGATGGTCTGGATTCATTTGAATCGTTGACACTGAAGCTGGAAGAGACCAAGATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGATTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAGCGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCGAAACCGGATTCTGCAAAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACAACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGAAAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTGTAGTAGAGATCTTGATGGAGTGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATTAGTTCATAAGATATTTCTGCA                                          ]
[-] EMBL CB629855             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GACCAAGATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGATTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAGCGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATTTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCGAAACCGGATTCTGCAAAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACAACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTTTGCCGCATCTTGAAAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTGTAGTAGAGATCTTGATGGAGTGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATTAGTTCATAAGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGAGGAAATATGGTATGATT]


>consensus_10353#0 CTCAAATTTCTTTGCTGCAAATGCCAAGACAAAGCAGGAGGAGAAACAGTTGATTGATAA AGGTAAACCAGCATACATGTTTTCACACCCAGATACAGCGATGCAAATCCACAAATGTCC ATGAAAGGTGTTGATGGGAGATCTGCAAGCAATAACCAGTTTTTTCACCAAGGTCAAAAT GGTTCAATTGGATGGTTTGCAAGAAGTCCTCTGGAAGCCCCTGCCATCAATAATTTTCCT AGGCTTGATCGGTCACATAATTCAAGTCTTGGTGCACTTGCTCCTCCGATGTCTATTCCT CGCATAGACCATCCTTCAGGTGCTTCCCCGATAGGTTCCTGTACGGTAGATCCAAGGAGC AGTGCTATCAATAACGCTACATTCCAACCGATTCCAAGCTTCAAAGGTTCTTCAACTGTG AACCAAAGCATTGGAACTTCGATTCTTAAGGTGAAGAAGAATGAGGACTTAGATGGCAAC TGTCCAGGTTTTGCACTTGATCCGTTTTGTGCATCAAGGCCACAGCATCAGGTGGCAATT TCAAGTGACGAGGAGCAAACCGAGTGCTTGATGTTTGAACATTCAGCACGGCATCGTGAG AATCCTCATTTTGCAAATGACAAGGGCCCAAAGAACTTTAACTTGAATGAAGCATTATCG GATGGACAGGAAGATTATCTTGTAGAACAAGATGGGGGAAGCGTTAGTAGCTTACCACAG AGTAAAGCCAGTGGGTTCCCGTGGCTCATAAAAACAACAGATACATGTACTCGCCCATCA GATTTGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAAC AGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCA ACATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAG GCGTTCGGGGACATTACCACTAGAACTGAGGTGGCATGTAATACGACTCAGGAGAGTGCT ACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGA GGTGACAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCA AATGAAGACAATTCAGAGTCATCTGTGGTGTCACATGAATGCCATGTGGTCTCCTTACAG AACAACCATGGTAAACGCAAATTTGTCATTGATTTAGAAGTGCCTGCTTGTGAAGAAGGT GTGGCCTGGGATTTTAATCAGGAATGTTCTCCTTCTGGCAAACTTGATGTAACTCAGGAG GCTGATGATGCACATTTTACATGCACTAAAATTGCAGCAGAGAGCATTATTGCTTTGTCC ATGCATGTGCCAACAATTGCAGAGACGCCTGATGATATGCTGCAGTGGTTTGCAGATCTT GCTTTATCAAGCACTGATGACCACGTTGAGCAAGCAGAAGCCCATGATTGCGTGAATAAT TCCAGTGATGATGGTCTGGATTCATTTGAATCGTTGACACTGAAGCTGGAAGAGACCAAG ATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGA TTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAG CGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATA GAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGT TTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTG TCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCGAAACCGGATTCTGCA AAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACA ACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGA AAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTGTAGTAGAGATCTTGATGGAG TGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCC CAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATT AGTTCATAAGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGAGGAAATATGGTATG ATT



consensusID : consensus_10353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 863
fasta sequence
                              [GCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCAAAACCGGATACTGCAAATCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCCTGCAGGGCATCTGAGCTCCTAAGGACGCGGGGTGCGCTTGGGAGACGAGCACCCCCGCTCCCTGCCGCTGCTAGCCCGCTTGTAAAAGCCCACTATGCAACATAGCCCGCTCACTTCCCCATTTCAGCTGCTTAGTCCTGACGCGCGCCACAGATCACTCTCTCCCCCCTCACAACAGGCCACCCCGTACCGCCTTAAGATTGTCCTCTGACCTACATACATCTGACCCCTTAAACCCCCTTGCTCAATTCACACCGACTTTTGTCCCCCCACTTTTACTTCCGCATCCGTCCATCCATTGCCCCTCCGTCCCGCGCTTATCCCACCCTTCTCACCCTCCAGCATCGGACTCTTACTTTACTCTCCCCCTCGCCCCTACGTTACTTCTCTCGTTTCCCGCTCTCCCCCTCGCGTCCATCGCTCCTATTTCCCGGCCAAACACTACCTCTGATATATCGCCCGACTGACCACAACGCTCCCCGTCTCTCTCACTGTAACCTATCCCACTAATGTCACTCGCCCCCTCACCATCGGCATCGTTCTGATCACCCGCCACACACTCCATAAT]

[+] EMBL CA758255             [GCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAGAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTTTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCAAAACCGGATACTGCAAATCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCCTGCAGGGCATCTGAGCTCCTAAGGACGCGGGGTGCGCTTGGGAGACGAGCACCCCCGCTCCCTGCCGCTGCTAGCCCGCTTGTAAAAGCCCACTATGCAACATAGCCCGCTCACTTCCCCATTTCAGCTGCTTAGTCCTGACGCGCGCCACAGATCACTCTCTCCCCCCTCACAACAGGCCACCCCGTACCGCCTTAAGATTGTCCTCTGACCTACATACATCTGACCCCTTAAACCCCCTTGCTCAATTCACACCGACTTTTGTCCCCCCACTTTTACTTCCGCATCCGTCCATCCATTGCCCCTCCGTCCCGCGCTTATCCCACCCTTCTCACCCTCCAGCATCGGACTCTTACTTTACTCTCCCCCTCGCCCCTACGTTACTTCTCTCGTTTCCCGCTCTCCCCCTCGCGTCCATCGCTCCTATTTCCCGGCCAAACACTACCTCTGATATATCGCCCGACTGACCACAACGCTCCCCGTCTCTCTCACTGTAACCTATCCCACTAATGTCACTCGCCCCCTCACCATCGGCATCGTTCTGATCACCCGCCACACACTCCATAAT]


>consensus_10353#1 GCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATAG AGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGTT TAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTGT CAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCAAAACCGGATACTGCAA ATCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCCTGCAG GGCATCTGAGCTCCTAAGGACGCGGGGTGCGCTTGGGAGACGAGCACCCCCGCTCCCTGC CGCTGCTAGCCCGCTTGTAAAAGCCCACTATGCAACATAGCCCGCTCACTTCCCCATTTC AGCTGCTTAGTCCTGACGCGCGCCACAGATCACTCTCTCCCCCCTCACAACAGGCCACCC CGTACCGCCTTAAGATTGTCCTCTGACCTACATACATCTGACCCCTTAAACCCCCTTGCT CAATTCACACCGACTTTTGTCCCCCCACTTTTACTTCCGCATCCGTCCATCCATTGCCCC TCCGTCCCGCGCTTATCCCACCCTTCTCACCCTCCAGCATCGGACTCTTACTTTACTCTC CCCCTCGCCCCTACGTTACTTCTCTCGTTTCCCGCTCTCCCCCTCGCGTCCATCGCTCCT ATTTCCCGGCCAAACACTACCTCTGATATATCGCCCGACTGACCACAACGCTCCCCGTCT CTCTCACTGTAACCTATCCCACTAATGTCACTCGCCCCCTCACCATCGGCATCGTTCTGA TCACCCGCCACACACTCCATAAT



consensusID : consensus_10353#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [AATTCTGCACGAGGGCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGATGAGACATGGTGTACATTTTTAATAAGAAATTCTTAGATTAGTTCATAAGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGATGAAATATGGCATGATTCGTTATGAGAATTGCCAGGGATGTAACTCTGGCTGATATCTGAAAAAAAAAAAAAAAAAAAAAAAAACTCGGAGGGGGGGCGCCG]

[+] EMBL CA754406             [AATTCTGCACGAGGGCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTCATGCTTTGGGGATGAGACATGGTGTACATTTTTAATAAGAAATTCTTAGATTAGTTCATAAGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGATGAAATATGGCATGATTCGTTATGAGAATTGCCAGGGATGTAACTCTGGCTGATATCTGAAAAAAAAAAAAAAAAAAAAAAAAACTCGGAGGGGGGGCGCCG]


>consensus_10353#2 AATTCTGCACGAGGGCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCCCAACTTTC ATGCTTTGGGGATGAGACATGGTGTACATTTTTAATAAGAAATTCTTAGATTAGTTCATA AGATATTTCTGCAACAACATTGTATTAAGCTGTTCCGATGAAATATGGCATGATTCGTTA TGAGAATTGCCAGGGATGTAACTCTGGCTGATATCTGAAAAAAAAAAAAAAAAAAAAAAA AACTCGGAGGGGGGGCGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10353#0      CTCAAATTTCTTTGCTGCAAATGCCAAGACAAAGCAGGAGGAGAAACAGTTGATTGATAA 60
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AGGTAAACCAGCATACATGTTTTCACACCCAGATACAGCGATGCAAATCCACAAATGTCC 120
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      ATGAAAGGTGTTGATGGGAGATCTGCAAGCAATAACCAGTTTTTTCACCAAGGTCAAAAT 180
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GGTTCAATTGGATGGTTTGCAAGAAGTCCTCTGGAAGCCCCTGCCATCAATAATTTTCCT 240
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AGGCTTGATCGGTCACATAATTCAAGTCTTGGTGCACTTGCTCCTCCGATGTCTATTCCT 300
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      CGCATAGACCATCCTTCAGGTGCTTCCCCGATAGGTTCCTGTACGGTAGATCCAAGGAGC 360
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AGTGCTATCAATAACGCTACATTCCAACCGATTCCAAGCTTCAAAGGTTCTTCAACTGTG 420
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AACCAAAGCATTGGAACTTCGATTCTTAAGGTGAAGAAGAATGAGGACTTAGATGGCAAC 480
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      TGTCCAGGTTTTGCACTTGATCCGTTTTGTGCATCAAGGCCACAGCATCAGGTGGCAATT 540
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      TCAAGTGACGAGGAGCAAACCGAGTGCTTGATGTTTGAACATTCAGCACGGCATCGTGAG 600
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AATCCTCATTTTGCAAATGACAAGGGCCCAAAGAACTTTAACTTGAATGAAGCATTATCG 660
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GATGGACAGGAAGATTATCTTGTAGAACAAGATGGGGGAAGCGTTAGTAGCTTACCACAG 720
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AGTAAAGCCAGTGGGTTCCCGTGGCTCATAAAAACAACAGATACATGTACTCGCCCATCA 780
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GATTTGCAAAATCCAAGGAAGGTTTTTGCCCATTCAAATAGGATTGTAATCGATCTGAAC 840
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AGCAATACTGATAGGAAAGAAGCAGCTTTGACTATTCATAGCCTGTCAGATTCTGCTTCA 900
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      ACATCCCTAGACTGTGGGGTTAAGAAGGAATCCCAGGATTGCGGGATTAAAAAGGATGAG 960
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GCGTTCGGGGACATTACCACTAGAACTGAGGTGGCATGTAATACGACTCAGGAGAGTGCT 1020
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      ACATGTTTACCTGTTCTATGCCAGGAATATGTGCCTGGAGATGATAAAGCTGCTAATGGA 1080
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GGTGACAAGAAAAGCAGTGCTCCTGTAAGGAATTTCATTGATCTGAATGATGATGCACCA 1140
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AATGAAGACAATTCAGAGTCATCTGTGGTGTCACATGAATGCCATGTGGTCTCCTTACAG 1200
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      AACAACCATGGTAAACGCAAATTTGTCATTGATTTAGAAGTGCCTGCTTGTGAAGAAGGT 1260
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GTGGCCTGGGATTTTAATCAGGAATGTTCTCCTTCTGGCAAACTTGATGTAACTCAGGAG 1320
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GCTGATGATGCACATTTTACATGCACTAAAATTGCAGCAGAGAGCATTATTGCTTTGTCC 1380
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      ATGCATGTGCCAACAATTGCAGAGACGCCTGATGATATGCTGCAGTGGTTTGCAGATCTT 1440
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      GCTTTATCAAGCACTGATGACCACGTTGAGCAAGCAGAAGCCCATGATTGCGTGAATAAT 1500
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      TCCAGTGATGATGGTCTGGATTCATTTGAATCGTTGACACTGAAGCTGGAAGAGACCAAG 1560
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      ATTGATGAGTACTGGAGCAGGCCACAGGCTCCTGAAATACCAAATGATGAACAAGCAGGA 1620
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      TTATCAGTGAACCTTCTCACTAAGCCAAAACGAGGCCAGCAAAGGAGGAGGCGGCAGAAG 1680
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      ------------------------------------------------------------
                                                                                   

consensus_10353#0      CGCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATA 1740
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      -GCGATTTTCAGAAAGATATCTTGCCTGGCCTTACATCACTTGCGAGACCTGAAATCATA 59
                                                                                   

consensus_10353#0      GAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGT 1800
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      GAGGACATTCAGTTACTTGAGGGGTTAGTACAGGCATCTGGTGGATCTTGGCAATCAAGT 119
                                                                                   

consensus_10353#0      TTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTG 1860
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      TTAACTAGGCGAGGAAGATATGGTGGGCGGCCAAGAGGAAGAAAACCTCGCAAGAATCTG 179
                                                                                   

consensus_10353#0      TCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCGAAACCGGATTCTGCA 1920
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      TCAGAAACTATAGAGGAAGAAGAAGTCCCGCTTAGTCCACCAGCAAAACCGGATACTGCA 239
                                                                                   

consensus_10353#0      AAGCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACA 1980
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      AATCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCCTGCA 299
                                                                                   

consensus_10353#0      ACGAGACGTTGTCGCAGACCGAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGA 2040
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      GGGCATCTGAGCTCCTAAGGACGCGGGGTGCGCTTGGGAGACGAGCACCCCCGCTCCCTG 359
                                                                                   

consensus_10353#0      AAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTGTAGTAGAGATCTTGATGGAG 2100
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      CCGCTGCTAGCCCGCTTGTAAAAGCCCACTATGCAACATAGCCCGCTCACTTCCCCATTT 419
                                                                                   

consensus_10353#0      TGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCC 2160
consensus_10353#2      --------AATTCTGCACGAGGGCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCC 52
consensus_10353#1      CAGCTGCTTAGTCCTGACGCGCGCCACAGATCACTCTCTCCCCCCTCACAACAGGCCACC 479
                                *             *   **  ***   *  *     *  *   ** * **

consensus_10353#0      CAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATT--TTTAATAA---GAAATTCTT 2215
consensus_10353#2      CAACTTTCATGCTTTGGGGATGAGACATGGTGTACATT--TTTAATAA---GAAATTCTT 107
consensus_10353#1      C---CGTACCGCCTTAAGATTGTCCTCTGACCTACATACATCTGACCCCTTAAACCCCCT 536
                       *     *   ** **  *  **     **   *****   * * *       **   * *

consensus_10353#0      AAATTAGTTCATAA-GATATTTCTGCAACAACATTGTATTAAGCTGTTCCGAGGAAATAT 2274
consensus_10353#2      AGATTAGTTCATAA-GATATTTCTGCAACAACATTGTATTAAGCTGTTCCGATGAAATAT 166
consensus_10353#1      TGCTCAATTCACACCGACTTTTGTCCCCCCACTTTTACTTCCGCA--TCCGTCCATCCAT 594
                          * * **** *  **  *** * *  * ** **   **  **   ****   *   **

consensus_10353#0      GGTATGATT--------------------------------------------------- 2283
consensus_10353#2      GGCATGATTCGTTATGAGAATTGCCAGGGATGTAACTCTGGCTGATATCTGAAAAAAAAA 226
consensus_10353#1      TGCCCC-TCCGTCCCGCGC-TTATCCCACCCTTCTCACCCTCCAGCATCGGACTCTTACT 652
                        *     *                                                    

consensus_10353#0      ------------------------------------------------------------
consensus_10353#2      AAAAAAAAAAAAAAAACTCGGAGGGGGGGCGCCG-------------------------- 260
consensus_10353#1      TTACTCTCCCCCTCGCCCCTACGTTACTTCTCTCGTTTCCCGCTCTCCCCCTCGCGTCCA 712
                                                                                   

consensus_10353#0      ------------------------------------------------------------
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      TCGCTCCTATTTCCCGGCCAAACACTACCTCTGATATATCGCCCGACTGACCACAACGCT 772
                                                                                   

consensus_10353#0      ------------------------------------------------------------
consensus_10353#2      ------------------------------------------------------------
consensus_10353#1      CCCCGTCTCTCTCACTGTAACCTATCCCACTAATGTCACTCGCCCCCTCACCATCGGCAT 832
                                                                                   

consensus_10353#0      -------------------------------
consensus_10353#2      -------------------------------
consensus_10353#1      CGTTCTGATCACCCGCCACACACTCCATAAT 863
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)