cluster # 10354

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Oryza sativa
cluster # 10354 cluster # 10354 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10354#0 length = 622 sequences # 5

consensus_10354#1 length = 564 sequences # 1
consensus_10354#2 length = 344 sequences # 1

consensusID : consensus_10354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 622
fasta sequence

                              [TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATGGCACAACCACCACCATCTTATGACGAAGTCAAT-GGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTATTTACTGAGGCAGTTCGTAAAAAAAAAATTTAAAAAAAAAAA]

[+] EMBL BI809076             [TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATGGCACAACCACCACCATCTTATGACGAAGTCAAT GGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCCAAGGGAGTAAAGTATTTACTGAGGCAGTTCGTAAAAAAAAAA              ]
[+] EMBL OSC0101              [                       gCACCTCCGA  CCCCA TCA GCAGAAAATTACATGGCACAGCCACCACCATCTTATGACGAAG CAATNGGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTG AACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGNGATGCTTTCTGATTCA GGGTATAGNCTACACTT                                                                                                                                                         ]
[-] EMBL CF312242             [                                                                                         CAAT GGCATGTTTGCATCCTCCCCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAaaaaa                                                                     ]
[+] EMBL BE040406             [                                                                                                                                                                                                                          TTATTGGGCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTAaaaaaaa                                   ]
[+] EMBL AU096960             [                                                                                                                                                                                                                                                                       GCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAANCAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTNCAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGNNTNANTTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGNAGTAAAGTATTTACTNAGNCAGTTCGTAACCTTCTTTTTTAAAAAAAAAAA]




>consensus_10354#0
TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATG
GCACAACCACCACCATCTTATGACGAAGTCAATGGCATGTTTGCATCCTCCTCTGTCGAT
GATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAA
AGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACC
AATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATC
GAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGAT
AAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCAC
TTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTA
CAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGC
CTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTATTTACTGAGGCAGTTCGTAA
AAAAAAAATTTAAAAAAAAAAA

consensusID : consensus_10354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [GAAATATGGCACTGGGAAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATACAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGAAGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAATGGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGCACAGCCA]

[+] EMBL CF312241             [GAAATATGGCACTGGGAAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATACAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGAAGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAATGGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGCACAGCCA]




>consensus_10354#1
GAAATATGGCACTGGGAAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGT
ACTATGGGAAGGCTCGTTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTG
GTACACGGGTGGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGA
GACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAG
TTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGC
TGGAAGCTGCTGAATACAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGG
AANGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGC
CTTATTGCGATGGTTGAAGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGAC
CACCTGGAACAAGAAATGGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCA
GCAGAAAATTACATGGCACAGCCA

consensusID : consensus_10354#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCTAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGAAAAAAGAAAACAAAGAAATA]

[+] EMBL CB630710             [ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCTAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGAAAAAAGAAAACAAAGAAATA]




>consensus_10354#2
ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAG
GCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCTAAAGACGAGAGCGAG
TTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGATAAATGTGTGTAGTTTT
GATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTG
ATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTA
TAATTTGTAAGACATTTCGGTAGAAAAAAGAAAACAAAGAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10354#0      TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATG 60
consensus_10354#2      ------------------------------------------------------------
consensus_10354#1      -----------------------------------GAAATATGGCACTGGGAAACACATG 25
                                                                                   

consensus_10354#0      GCACAACCACCACCATCTTATGACGAAGTCAATGGCATGTTTGCATCCTCCTCTGTCGAT 120
consensus_10354#2      ------------------------------------------------------------
consensus_10354#1      TACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGAT 85
                                                                                   

consensus_10354#0      GATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAA 180
consensus_10354#2      ------------------------------------------------------------
consensus_10354#1      GGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCG 145
                                                                                   

consensus_10354#0      AGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACC 240
consensus_10354#2      ----------------ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACC 44
consensus_10354#1      AGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCG 205
                                        *   *       *  *        *  **  ******* * * 

consensus_10354#0      AATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATC 300
consensus_10354#2      AATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATC 104
consensus_10354#1      AATGA--GGCAAGAAGCTGAAGCCCAGGCTGTTGAA-----GTTTCAAGACGGCAAAA-C 257
                       ****   **  *****  ***  * ***     * *     *** * * * **  * * *

consensus_10354#0      GAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGAT 360
consensus_10354#2      TAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGAT 164
consensus_10354#1      AGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATAC 317
                         *  * *****  ** **    * *  * **   *   *   *  * *      *  * 

consensus_10354#0      AAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCAC 420
consensus_10354#2      AAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCAC 224
consensus_10354#1      AAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTG----CAG 373
                       ***  **   *  **   *     *** *   *  *   *          ***    ** 

consensus_10354#0      TTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAG-ACTACACTTCGT-GTTATT 478
consensus_10354#2      TTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAG-ACTACACTTCGT-GTTATT 282
consensus_10354#1      CAATGGCTGCCGT-TGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATG 432
                         ** *** **   *** ***     *   *  *  * *  **  * * *  * *  ** 

consensus_10354#0      TACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGG 538
consensus_10354#2      TACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGA--AAAAAGAAAACAAAGA 340
consensus_10354#1      GTTGAAGCCGAAAGAGCCTA--CCATCAGAGAGTTCTGGAGA--TCCTTGACCACCTGGA 488
                           *      **  *  **     * *** * *** * ***       *        * 

consensus_10354#0      GCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTATTTACTGAGGCAGTTCGT 598
consensus_10354#2      AATA-------------------------------------------------------- 344
consensus_10354#1      ACAAGAAATGGT---ATCAGAGCGTCAAAA--GATTGAAGCACCT-CCGACCCCATCAGC 542
                                                                                   

consensus_10354#0      AAAAAAAAAATTTAAAAAAAAAAA 622
consensus_10354#2      ------------------------
consensus_10354#1      AGAAAATTACATGGCACAGCCA-- 564