cluster # 10358

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Oryza sativa
cluster # 10358 cluster # 10358 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10358#0 length = 1071 sequences # 6

consensus_10358#1 length = 286 sequences # 1

consensusID : consensus_10358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1071
fasta sequence

                              [TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTCTGTATATACTACTCTCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGAAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA]

[+] EMBL CF312688             [TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF281282             [         TGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCCGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAATGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAAC                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK069934             [                             CATCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCGAGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCGACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGGACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTC                                                                                                                              ]
[+] EMBL CF296022             [                               TCTGCTAGCTCTCCCTGCCATTCCAGTCATTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTCTTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCGTGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGGCGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCGGGATGGTGGACCCGGTGAACGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF281283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGCCAAGAAGGAGGACGGCGACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACTACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATATTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTAGTAATAAGGAAGATATGTATGCACCATATGTCTGTATATACTACTCTCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGAAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA]
[-] EMBL CF296023             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAATGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTCTGTATATACTAaaaaaaa                                                                                                            ]




>consensus_10358#0
TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCA
TTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTC
TTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCG
TGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGG
CGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCG
GGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCG
AGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCG
ACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGG
ACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCG
ACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACT
ACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCG
TGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGC
CATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACG
TGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACA
TGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAA
TGCTGTAATTTTGGTGATAAGGAAGATATGTATGCACCATATGTCTGTATATACTACTCT
CCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGA
AAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA

consensusID : consensus_10358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TGTTGAACTCGATCAATCCCCCCATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACGGGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACATGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAATGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF312689             [TGTTGAACTCGATCAATCCCCCCATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACGGGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACATGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAATGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10358#1
TGTTGAACTCGATCAATCCCCCCATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATG
TGTAGTACTGTATACGTTTACGGGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAA
TGCAAGCATGCTAGTTATTACATGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTC
CCGAGGTAGTAACTAGTTTTAATGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCC
CCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10358#0      TGACTGGACTGAAGGAGTAGAAAGCGTTTCATCTGCTAGCTCTCCCTGCCATTCCAGTCA 60
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      TTGGCATTGTTGTTTCCTGTCCACTGACTCGCAGTTCATCCCGGATTCTTCTCCTCTTTC 120
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      TTCGCCGCCGGCTAGCCGGTGTTCGCGCTCCGGCGGCATCAGACATGTCGAAGAAAATCG 180
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      TGGTGAAGCTGAACGTGCACGACAAGGCGGAGAAGCAGAAGGCCATGAAGGCCGTCTCGG 240
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      CGCTCATCGGCATCGACGAGCTGTCCATGGACATGGCGAGCCAGAAGATGACGGTGATCG 300
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      GGATGGTGGACCCGGTGAACGTGGTGAGCAAGCTGCGCAAGTCGTGGGCGGCGACCATCG 360
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      AGTCCGTCGGGCCGGCGAAGGAGCCGGAGAAGAAGGAGGAGAAGAAGGACGGCGGCGGCG 420
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      ACGGCAAGAAGGACGGCGGCGGCGACGGCAAGAAGGAAGGCGAGGCCGGGGACAAGAAGG 480
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      ACGGCGATGCGGCCAAGAAGGACGGCGACAAGGACGGCGAGGCCAAGAAGGAGGACGGCG 540
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      ACAAGAAGCCGGCGGCGCCGACGGAGCAGCAGCTCTTCGCCGAGCTCATGAACCAGTACT 600
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      ACCACCGGCCGGCGGCGTACGGCTACAACCCTTACATGTCCGTGCCACCACACTACGTCG 660
consensus_10358#1      ------------------------------------------------------------
                                                                                   

consensus_10358#0      TGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGC 720
consensus_10358#1      --------------------------------------TGTTGAACTCGATCAATCCCCC 22
                                                             ** *********** ** ** *

consensus_10358#0      CATGGCTAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACG 780
consensus_10358#1      CATGGTTAAAGGTAGTACCCGAGTACGTACCCAGCATGTGTAGTACTGTATACGTTTACG 82
                       ***** ** ******** ************ ************************ ****

consensus_10358#0      TGTACGCACGAGTTACGACGCAAATCACTATGCATGAATGCAAGCATGCTAGCTACTACA 840
consensus_10358#1      GGTACGCCCGAGTTTCGACCCAAATCCCTATGCATGAATGCAAGCATGCTAGTTATTACA 142
                        ****** ****** **** ****** ************************* ** ****

consensus_10358#0      TGTCCAGTTACATGGTTAAAAGTTGTTATATCTTACTACCGAGGTAGTAACTAGTTCTAA 900
consensus_10358#1      TGTCCAGTTACATGGTTAAAAGTTGTTATATTTTACTCCCGAGGTAGTAACTAGTTTTAA 202
                       ******************************* ***** ****************** ***

consensus_10358#0      TGCTGTAATTTTGGTGATAAGGA-AGATATGTATGCACCATATGTCTGTATATACTACTC 959
consensus_10358#1      TGCGGTAATTTTGGTGATAAGGAGAAATATGTATGCCCCCTAAAAAAAAAAAAAAAA--- 259
                       *** ******************* * ********** ** **       * * *  *   

consensus_10358#0      TCCGTATAGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAG 1019
consensus_10358#1      ---AAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 286
                            * *  *      ** *   *  ***                              

consensus_10358#0      AAAATCATAATGTAATCATCTATAGCTGCAGTTTTGTTTTTAAAAAAAAAAA 1071
consensus_10358#1      ----------------------------------------------------