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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 924 fasta sequence
[AAAAAACCGGTGGCAAATTTGCAAATGCCCCACCCTTTAACCCACATATATGTTTCTGATTTGGAGGGAAGATACACTCCTTTTTTTTCATTTATCTTATTATCACGCCACATTACAATTTATTATTGTACAGTACTATTTACAATAGCAGCATATGACCAACAGCACTAAGTTTTTTTTTCCTTTTTCATTTTTTTTTCAAACGGAATTTTATTTGCAGAG-ATTTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCCACAGCCTGAACCGCAGCCACCGGACTTGGCATGTCCAAC-GGTGGAGCTCTCCATGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCC-GCAG-CCGCCGGACTTGACATGGCCA-GCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAGCCGCCACCGCAACCGCCGCCGCAGCCAGAGCCACAGCCTGCAGACTTC-GCATGGACATCATCCTTGGAGCTCTCGACGACCATGGCGCCGCACCCGCCGCCGCCACA-GCCACCACCGCAGCCCGAGCCACATCCACCGGACTTGCCATGGCCG-CGCGCGACGCCGCCGCCGCCAGCCTTGGTGGCCTCAACGACCTTGGCAACACCACCACCACAACCGCCGCCACAGCCGCCGCCGCATCCCGAGCCGCACCCAGCCGACTCTGTCTGACCGCCGCCGCCTGCCGCGACAGCCTTGCATCTCGCGGCCTTGCATCTCGCGGCGGCGACCACCTTGTCGCCTGCCATGT]
[+] EMBL CB628443 [AAAAAACCGGTGGCAAATTTGCAAATGCCCCACCCTTTAACCCACATATATGTTTCTGATTTGGAGGGAAGATACACTCCTTTTTTTTCATTTATCTTATTATCACGCCACATTACAATTTATTATTGTACAGTACTATTTACAATAGCAGCATATGACCAACAGCACTAAGTTTTTTTTTCCTTTTTCATTTTTTTTTCAAACGGAATTTTATTTGCAGAGAATTGTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCCACAGCCTGAACCGCAGCCACCGGACTTGGCATGTCCAAC GGGGGAGCTCTCCATGGCCACGCCGCCACCGCAACCTCCACCGCAGCCGCCGCCGCAACCTGAGCC GCAC CCGCCGGACTTGACATGGCCA GCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAGCCGCCACCGCAACCGCCGCCGCATCCAGAGCCAAAGCCTGCAGACTTC GCATGGACATCATCCTTGGAGCTCTCGACAACCATGGCGCCGCACCCGCCGCCGCCACA GCCACCAACGCAGCCCGAGCCACATCCACCGGACTTGC ]
[-] EMBL BM421754 [ tTTTTTTTTTCAAACGGAATTTTAGTTGGAGAG A ATTGA TTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTG CTG GCCGCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGGAG CGGCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCCACAGCCTGAACCGCAGCCACCGGACTTGGCATGTCCAACGGGTGGAGCTCTCCATGGCCACGCCGCCACCGCAG CTCCACCG AGCCGCCGCCGCAGCCTGAGCCTGCAGACCGCCGGACTTGACATGGCCATGCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAG CGCCACCGAAACCGCCGCCG AG CAGAGCCACAGCCTGCAGACTTCTGCATGGACATCATCCTTGGAGCTCTCGA GA CATGGGGCCG A CCGCCG CG CACAGGACACCACCG AG CCGAGCCACATCCACCGGACTTG CATG CG CG ]
[-] EMBL BI802818 [ TTTTTTCAAACGGAATTTTATTTGCAGAG AATTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCCACAGCCTGAACCGCAGCCACCGGACTTGGCATGTCCAAC GGTGGAGCTCTCCATGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCC GCAG CCGCCGGACTTGACATGGCCA GCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAGCCGCCACCGCAACCGCCGCCGCAGCCAGAGCCACAGCCTGCAGACTTC GCATGGACATCATCCTTGGAGCTCTCGACGACCATGGCGCCG ACCCGCCGCCGCCACA GCCACCACCG AGCCCGAGCCACATCCACCGGACTTGCCATGGCCG CGCG ]
[+] EMBL CB630141 [ ACGGAATTTTATTTGCAGAC ATTTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCCACAGCCTGAACCGCAGCCACCGGACTTGGCATGTCCAAC GGTGGAGCTCTCCATGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCC GCAG CCGCCGGACTTGACATGGCCA GCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAGCCGCCACCGCAACCGCCGCCGCAGCCAGAGCCACAGCCTGCAGACTTC GCATGGACATCATCCTTGGAGCTCTCGACGACCATGGCGCCGCACCCGCCGCCGCCACA GCCACCACCGCAGCCCGAGCCACATCCACCGGACTTGCCATGGCCGCCGC CGACGCCGCCGCCGCCAGCCTTGGTGGCCTCAACGACCTTGGCAACACCACCACCACAACCGCCGCCACAGCCGCCGCCGCATCCCGAGCCGCACCCAGCCGACTCTGTCTGACCGCCGCCGCCTGCCGCGACAGCCTTGCATCTCGCGGCCTTGCATCTCGCGGCGGCGACCACCTTGTCGCCTGCCATGT]
consensusID : consensus_10365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[TTTTTCAAACGGAATTTTATTTGCGGAGAATTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCAGGGCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCGCCACAGACTGAACCGCAGCACCGGACTTGGCATGTCCAACGGTGGAGCTCTCCATGGCCACGCCGCCACCGAGCTCCACCGAAGCGCCGCCGCAGCCTGAGCCGCAGCCGCCGGACTTGACATGGCCAGCCTTGGAGCTTTCCATGACCATGCCGCGCCACAAGCGCACCGAACCGCGCGCAGCCAGAGCCACAGCCTGCAGACTTCGCATGGACATCATCCTTGGAGCTCTCGACGACATGGGCCGACCGCGCGCAAGCACACGAGACCGAGCCACATCCAACGGACTTGCCATGGCGCGCGACAGCCGCGCGCAGCTTGGTGGCTCAAGAACTTGGGAACACACACAAACGCGCAAGCGCGCGATCCGAGCGAACCAGCGACTCTGTTGACGCGCGCTGCGGGAAAGCATGGATCTGGGCTGCATTCGG]
[-] EMBL BI812273 [TTTTTCAAACGGAATTTTATTTGCGGAGAATTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCCGTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCAGGGCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCGCCACAGACTGAACCGCAGCACCGGACTTGGCATGTCCAACGGTGGAGCTCTCCATGGCCACGCCGCCACCGAGCTCCACCGAAGCGCCGCCGCAGCCTGAGCCGCAGCCGCCGGACTTGACATGGCCAGCCTTGGAGCTTTCCATGACCATGCCGCGCCACAAGCGCACCGAACCGCGCGCAGCCAGAGCCACAGCCTGCAGACTTCGCATGGACATCATCCTTGGAGCTCTCGACGACATGGGCCGACCGCGCGCAAGCACACGAGACCGAGCCACATCCAACGGACTTGCCATGGCGCGCGACAGCCGCGCGCAGCTTGGTGGCTCAAGAACTTGGGAACACACACAAACGCGCAAGCGCGCGATCCGAGCGAACCAGCGACTCTGTTGACGCGCGCTGCGGGAAAGCATGGATCTGGGCTGCATTCGG]
consensusID : consensus_10365#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[TTTTTCAAACGGAATTTTATTTGCAGAGAATTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGGGCCGCTCAGGTGCTCGCGTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCACAGCCTGAACCGAAGCCACCGGACTGGGCATGTCCAACGGTGGAGCTCTCCATGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCCGCAGCCGCCGGACTTGACATGGCCAGCCTGGAGCTTATCCATGACCATGCCGCCGCCACAGCCGCACCGCAACCGCGCCGCAGCAGAGCCAAAGCCTGCAGACGTTCGCATGGACATCATCCTTGGAGCTCTCGACGACCATGGCGCCGAACCCGCGCGCCACAGCAACACGAGCCCGAGCCAATCACGGACTTGCATGGCCGCGCGAGCGCGCGCAGCTTGGTGGCTCAACGACTGGACACACACCAAACGCGCACAG]
[-] EMBL BI801811 [TTTTTCAAACGGAATTTTATTTGCAGAGAATTTGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGGGCCGCTCAGGTGCTCGCGTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGCAGCCGCCACCACAGCCGCCTGACTTGGCAGCCATGCCGCCGCAGCCGCCGCACAGCCTGAACCGAAGCCACCGGACTGGGCATGTCCAACGGTGGAGCTCTCCATGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCCGCAGCCGCCGGACTTGACATGGCCAGCCTGGAGCTTATCCATGACCATGCCGCCGCCACAGCCGCACCGCAACCGCGCCGCAGCAGAGCCAAAGCCTGCAGACGTTCGCATGGACATCATCCTTGGAGCTCTCGACGACCATGGCGCCGAACCCGCGCGCCACAGCAACACGAGCCCGAGCCAATCACGGACTTGCATGGCCGCGCGAGCGCGCGCAGCTTGGTGGCTCAACGACTGGACACACACCAAACGCGCACAG]
consensusID : consensus_10365#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence
[TTTTTTCAAACGGAATTTTATTTGCAGAGAATTGGGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGGGACATCGCCGGNGCAACTGCCTGCGCCGGTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGNAGCCGCCGCCACCGCTAGCCTGCCTACCACAGCCGTCCTGGACTTGGCAGCCAATGACCGGCCGTCAGCCGACCGTCCAACAGCCTGAAACCGACAGCCACCGGACTTGGCATGTCCAACGNGGTGGAGCTCTCCAGTGGCCATACCGTCCATCCGCAGTCC]
[-] EMBL BQ906423 [TTTTTTCAAACGGAATTTTATTTGCAGAGAATTGGGATTTGATGACACACTTCACCAGCTGGTCCAGAATGGCGCGCCGGGACATCGCCGGNGCAACTGCCTGCGCCGGTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGNAGCCGCCGCCACCGCTAGCCTGCCTACCACAGCCGTCCTGGACTTGGCAGCCAATGACCGGCCGTCAGCCGACCGTCCAACAGCCTGAAACCGACAGCCACCGGACTTGGCATGTCCAACGNGGTGGAGCTCTCCAGTGGCCATACCGTCCATCCGCAGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10365#1 ------------------------------------------------------------
consensus_10365#2 ------------------------------------------------------------
consensus_10365#0 AAAAAACCGGTGGCAAATTTGCAAATGCCCCACCCTTTAACCCACATATATGTTTCTGAT 60
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 ------------------------------------------------------------
consensus_10365#2 ------------------------------------------------------------
consensus_10365#0 TTGGAGGGAAGATACACTCCTTTTTTTTCATTTATCTTATTATCACGCCACATTACAATT 120
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 ------------------------------------------------------------
consensus_10365#2 ------------------------------------------------------------
consensus_10365#0 TATTATTGTACAGTACTATTTACAATAGCAGCATATGACCAACAGCACTAAGTTTTTTTT 180
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 --------------TTTTTCAAACGGAATTTTATTTGCGGAGAATTTG-ATTTGATGACA 45
consensus_10365#2 --------------TTTTTCAAACGGAATTTTATTTGCAGAGAATTTG-ATTTGATGACA 45
consensus_10365#0 TCCTTTTTCATTTTTTTTTCAAACGGAATTTTATTTGCAGAGATTTTG-ATTTGATGACA 239
consensus_10365#3 -------------TTTTTTCAAACGGAATTTTATTTGCAGAGAATTGGGATTTGATGACA 47
************************ **** ** * ***********
consensus_10365#1 CACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCC 105
consensus_10365#2 CACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGGGCC 105
consensus_10365#0 CACTTCACCAGCTGGTCCAGAATGGCGCGCCGCGACATCGCCGGCGCAACTGCCTGCGCC 299
consensus_10365#3 CACTTCACCAGCTGGTCCAGAATGGCGCGCCGGGACATCGCCGGNGCAACTGCCTGCGCC 107
******************************** *********** *********** ***
consensus_10365#1 G-TCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGC-A 163
consensus_10365#2 GCTCAGGTGCTCGCGT-GAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGC-A 163
consensus_10365#0 GCTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGCAGCCGCCGCCACCGC-A 358
consensus_10365#3 GGTCAGGTGCTCGCGTTGAGCATCGCGCCGCAACCACCGCCGNAGCCGCCGCCACCGCTA 167
* ************** ************************* *************** *
consensus_10365#1 GCCG--CCACCAGGGC-GCCT--GACTTGGCAGCCA-TGCC--GCCG-CAGCCG-C-GCC 212
consensus_10365#2 GCCG--CCACCACAGCCGCCT--GACTTGGCAGCCA-TGCC--GCCG-CAGCCG-C-CGC 213
consensus_10365#0 GCCG--CCACCACAGCCGCCT--GACTTGGCAGCCA-TGCC--GCCG-CAGCCG-CCGCC 409
consensus_10365#3 GCCTGCCTACCACAGCCGTCCTGGACTTGGCAGCCAATGACCGGCCGTCAGCCGACCGTC 227
*** * **** ** * * ************* ** * **** ****** * *
consensus_10365#1 --ACAGACTGAACC--GCAGC-ACCGGACTTGGCATGTCCAACGG--TGGAGCTCTCCA- 264
consensus_10365#2 --ACAGCCTGAACC--GAAGCCACCGGACTGGGCATGTCCAACGG--TGGAGCTCTCCA- 266
consensus_10365#0 --ACAGCCTGAACC--GCAGCCACCGGACTTGGCATGTCCAACGG--TGGAGCTCTCCA- 462
consensus_10365#3 CAACAGCCTGAAACCGACAGCCACCGGACTTGGCATGTCCAACGNGGTGGAGCTCTCCAG 287
**** ***** * *** ******** ************* ************
consensus_10365#1 TGGCCACGCCGCCACCGAG--CTCCACCGAAGC-GCCGCCGCAGCCTGAGCCGCAGCCGC 321
consensus_10365#2 TGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCCGCAGCCGC 326
consensus_10365#0 TGGCCACGCCGCCACCGCAGCCTCCACCGCAGCCGCCGCCGCAGCCTGAGCCGCAGCCGC 522
consensus_10365#3 TGGCCATACCGTCCATCCGCAGTCC----------------------------------- 312
****** *** * ***
consensus_10365#1 CGGACTTGACATGGCCAGCCTTGGAGCTTTCCATGACCATGCCGC-GCCACAAGCGC-AC 379
consensus_10365#2 CGGACTTGACATGGCCAGCCTGGAGCTTATCCATGACCATGCCGCCGCCACAGCCGC-AC 385
consensus_10365#0 CGGACTTGACATGGCCAGCCTTGGAGCTTTCCATGACCATGCCGCCGCCACAGCCGCCAC 582
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 CG-AACCGCG--CGCAGCCAGAGCCACAGCCTGCAGAC-TTCGCATGGACATCATCCTTG 435
consensus_10365#2 CGCAACCGCG--CCGCAGCAGAGCCAAAGCCTGCAGACGTTCGCATGGACATCATCCTTG 443
consensus_10365#0 CGCAACCGCCGCCGCAGCCAGAGCCACAGCCTGCAGAC-TTCGCATGGACATCATCCTTG 641
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 GAGCTCTCGACGAC-ATGG-GCCGACCGCGCG--CA----AGC-A-CACG--AGACCGAG 483
consensus_10365#2 GAGCTCTCGACGACCATGGCGCCGAACCCGCG--CGCCACAGC-AACACG--AGCCCGAG 498
consensus_10365#0 GAGCTCTCGACGACCATGGCGCCGCACCCGCCGCCGCCACAGCCACCACCGCAGCCCGAG 701
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 CCACATCCAACGGACTTGCCATGGC---GCGCGACA--GCCGCGCGCAGC-TTGGTGGC- 536
consensus_10365#2 CCA-ATC--ACGGACTTGCATGGCC---GCGCGAG-----CGCGCGCAGC-TTGGTGGC- 545
consensus_10365#0 CCACATCCACCGGACTTGCCATGGCCGCGCGCGACGCCGCCGCCGCCAGCCTTGGTGGCC 761
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 TCAAGAAC-TTGGGAACACA-----CACAAACGC----GCAAGCGC----GCGATCCGAG 582
consensus_10365#2 TCAACGAC-T-GGACACACA-----C-CAAACGC----GCACAG---------------- 577
consensus_10365#0 TCAACGACCTTGGCAACACCACCACCACAACCGCCGCCACAGCCGCCGCCGCATCCCGAG 821
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 CG--AACCAGC-GACTCTGT-TGACGCGCGCTGC-----GGGAAAGCATGGATCTGGGCT 633
consensus_10365#2 ------------------------------------------------------------
consensus_10365#0 CCGCACCCAGCCGACTCTGTCTGACCGCCGCCGCCTGCCGCGACAGCCTTGCATCTCGCG 881
consensus_10365#3 ------------------------------------------------------------
consensus_10365#1 GCATTCGG----------------------------------- 641
consensus_10365#2 -------------------------------------------
consensus_10365#0 GCCTTGCATCTCGCGGCGGCGACCACCTTGTCGCCTGCCATGT 924
consensus_10365#3 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||