|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1038 fasta sequence
[GTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCGGGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGGTACAGCACTTCGTCTTCCTTTTCCAGTGTTCAACGAGCTGTATCAATCTGGATACTGTTAAAACTGAAGCTATGCATCAGATCAGCTTGAAATTGTTGAATTATGCATGTTGCTTTTGAAGCTGGATGGTTGTTATATATTATTGCTCCTGTGTTTAGGTTGGATTTGGACTGGTTAGGCATTGACTTTTGTAGTGAGCCTTGAAAGCCACAGCTAGATCTATGTTTTATTCTTTGATTGCTATCCTTCTGGAAGGATGAAAAAAAGGTGTTCTTTCTTTTGTGAAATGTGCCATACGTTATTGACGTCTATGTTCCATAAGCTAAGACCCTAGGAATAAACCCACTTCTGTATGCTGGAGTATGAATACCTGTTACATATGTAGCGTACTCCCTCATTATACTAGGATTGGTCATATCCCATCTTAAGTTAAATTATTTTGGGACGAAGGGAGTAGTGTTAAAAATGTTTGTATGAAGTATAAATGATTGATACAGTATGGAGCATCACAGGTCTTAAGTTTGG]
[+] EMBL AK109239 [GTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCGGGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGGTACAGCACTTCGTCTTCCTTTTCCAGTGTTCAACGAGCTGTATCAATCTGGATACTGTTAAAACTGAAGCTATGCATCAGATCAGCTTGAAATTGTTGAATTATGCATGTTGCTTTTGAAGCTGGATGGTTGTTATATATTATTGCTCCTGTGTTTAGGTTGGATTTGGACTGGTTAGGCATTGACTTTTGTAGTGAGCCTTGAAAGCCACAGCTAGATCTATGTTTTATTCTTTGATTGCTATCCTTCTGGAAGGATGAAAAAAAGGTGTTCTTTCTTTTGTGAAATGTGCCATACGTTATTGACGTCTATGTTCCATAAGCTAAGACCCTAGGAATAAACCCACTTCTGTATGCTGGAGTATGAATACCTGTTACATATGTAGCGTACTCCCTCATTATACTAGGATTGGTCATATCCCATCTTAAGTTAAATTATTTTGGGACGAAGGGAGTAGTGTTAAAAATGTTTGTATGAAGTATAAATGATTGATACAGTATGGAGCATCACAGGTCTTAAGTTTGG]
consensusID : consensus_10380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 777 fasta sequence
[CCAGCTGTTTTGTCCGCTCGGTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCGGGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGATATTCGACATGTGACTTTGCATTGGCTTGATGCCATTATAAAGAGTGATAGTCCTTTTCTCCATAAGTTGTTCGAATTAATATCATTTCTTATCAATTTTTCTTATTATGAATTGTGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGTATCATGAATTCACGATTGAATTGTCTTGTCAACATGGTGCATTTCAATGGTCAACATGGTGCATTTCAATGCAAATAAAACAATAGCAT]
[+] EMBL AK068546 [CCAGCTGTTTTGTCCGCTCGGTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCGGGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGATATTCGACATGTGACTTTGCATTGGCTTGATGCCATTATAAAGAGTGATAGTCCTTTTCTCCATAAGTTGTTCGAATTAATATCATTTCTTATCAATTTTTCTTATTATGAATTGTGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGTATCATGAATTCACGATTGAATTGTCTTGTCAACATGGTGCATTTCAATGGTCAACATGGTGCATTTCAATGCAAATAAAACAATAGCAT]
[-] EMBL CB657024 [ TTCGTTCCGCTTCGGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGTTCTCCCTCGCGGTCCTCCCGTGGTCCCCGGCTCAGGGGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCCCCGCGCCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCCCCGCCCCCGTGGTGTCCGTGCTCCTGACCGTGGCGTTCGTGGGGCTCTCCATCCTCACCATCGGGGTGATTTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGATATTCGACATGTGACTTTGCATTGGCTTGATGCCATTATAAAGAGTGATAGTCCTTTTCTCCATAAGTTGTTGGAATTAATATCATTTCTTATCAATTTTTCTTATTATGAATTGTGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGTATCAGGAATTCAGGATTGAAT ]
[+] EMBL CB657023 [ GCTTCCTTCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCGGGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGAGGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCCACAGGCAGAAAGAGGAAGCGAGGAAGAAGAGGGCCAAGGTTACGGGAACGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGATATTCGACATGTGACTTTGCATTGGCTTGATGCCATTATAAAGAGTGATAGCCCTTTTCTCCATAAATAGTTCGAATTAATATCATTTCTTATCGATTTTTCTTATTATGAATTGGGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGT ]
[+] EMBL CB657546 [ GCTTCTGGCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCATCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGAGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGAGGACGAGCGGCGGTGGCGGCGGCGGGAGAAGTTGACCCGCCCATGGAGCAAACCGAGGCCATGAT ]
[+] EMBL CB679353 [ GCGGCGCGAGGCGAGGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGGCTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGATGCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGGCGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGGCGGATGACGACAGCGTCACCGCCACCGTGGAGTCCGTGCTCCTGACGGACACGTTCCCCAGGGTCTCGATCCGCGACATCGa ]
[+] EMBL CA765257 [ AGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGATACTCGACATGTGACTTTGCATTGGCTTGATGCCATTATAAAGAGTGATAGTCCTTTTCTCCATAAGTTGCTCGAATTAATATCATTTCTTATCAATTTTTCTTATTATGAATTGTGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGTATCATGAATTCACGATTGAATTGTCTTGTCAACATGGTGCATTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10380#0 --------------------GTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGA 40
consensus_10380#1 CCAGCTGTTTTGTCCGCTCGGTTTCCGACCATTCGTTCCGCTTCGGGCGGCGCGAGGCGA 60
****************************************
consensus_10380#0 GGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGG 100
consensus_10380#1 GGATAATGGCGGCAGCGCACGCGCACCCGCTCTCCCTCGCCGTCCTCCCGTCGTCCCCGG 120
************************************************************
consensus_10380#0 CTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGAT 160
consensus_10380#1 CTCAGGCGACGCCGCTGCCGCTCTTCCTGAGGTACGCTGCTCTCCGTCGCGGTGGGAGAT 180
************************************************************
consensus_10380#0 GCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGG 220
consensus_10380#1 GCGGCGGAGCGACGAGGCCGCTGCGGCTCACGAGGCTGCGCCGCGGCCGAGCGGCGGTGG 240
************************************************************
consensus_10380#0 CGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGG 280
consensus_10380#1 CGGCGGCGGGGGAAGTTGACGCGCCCATGGAGCAGACCGAGGCCATGATGAGGGTGGCGG 300
************************************************************
consensus_10380#0 CGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCG 340
consensus_10380#1 CGGATGACGACAGCGTCACCGCCACCGTGGTGTCCGTGCTCCTGACCGTCGCGTTCGTCG 360
************************************************************
consensus_10380#0 GGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGA 400
consensus_10380#1 GGCTCTCCATCCTCACCATCGGGGTGATCTACCTGTCGGTTACCGACTTCCTGCAGAAGA 420
************************************************************
consensus_10380#0 GGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGA 460
consensus_10380#1 GGGAGAGGGAGAAGTTTGAGAGGGAGGAGGCCGAGAGGCAGAAAGAGGAAGCGAGGAAGA 480
************************************************************
consensus_10380#0 AGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGGTACAGCA 520
consensus_10380#1 AGAGGGCCAAGGCGAGGGGAAGGAAAAGAAAGTTCTGAACTTCTGATTGCTGATCGA--- 537
**************************************************** * *
consensus_10380#0 CTTCGTCTTCCTTTTCCAGTGTTCAACGAGCTGTATCAATCTGGATACTGTTAAAACTGA 580
consensus_10380#1 ------------TATTCGACATGTGACT--TTGCATTGG-CTTGATGCCATTATAA--AG 580
* * * * ** ** ** ** *** * *** **
consensus_10380#0 AGCTATGCATCAGATCAGCTTGAAATTGTTGAATTATGCATGTTGCTTTTGAAGCTGGAT 640
consensus_10380#1 AGTGATAGTCCTTTTCTCCATAAGTTGTTCGAATTAATATCATTTCTTATCAATTT---T 637
** ** * ** * * * * * ****** ** *** * ** * *
consensus_10380#0 GGTTGTTATATATTATT-GCTCCTGTGTTTAGGTTGGATTTGGACTGGTTAGGCATTGAC 699
consensus_10380#1 TCTTATTATGAATTGTGAGAAGCTGTACTAGAAGTGCCTCGTAAATTCTGTATCATGAAT 697
** **** *** * * **** * ** * * * * *** *
consensus_10380#0 TTTTGTAGTGAGCCTTGAAAGCCACAGCTAGATCTATGTTTTATTCTTTGAT-TGCTATC 758
consensus_10380#1 TCACG-ATTGAATTGTCTTGTCAACA--TGG---TGCATTTCAATGGTCAACATGGTGCA 751
* * * *** * * *** * * * *** * * * * ** *
consensus_10380#0 CTTCTGGAAGGATGAAAAAAAGGTGTTCTTTCTTTTGTGAAATGTGCCATACGTTATTGA 818
consensus_10380#1 TTTCAATGCAAATAAAACAATAGCAT---------------------------------- 777
*** ** *** ** * *
consensus_10380#0 CGTCTATGTTCCATAAGCTAAGACCCTAGGAATAAACCCACTTCTGTATGCTGGAGTATG 878
consensus_10380#1 ------------------------------------------------------------
consensus_10380#0 AATACCTGTTACATATGTAGCGTACTCCCTCATTATACTAGGATTGGTCATATCCCATCT 938
consensus_10380#1 ------------------------------------------------------------
consensus_10380#0 TAAGTTAAATTATTTTGGGACGAAGGGAGTAGTGTTAAAAATGTTTGTATGAAGTATAAA 998
consensus_10380#1 ------------------------------------------------------------
consensus_10380#0 TGATTGATACAGTATGGAGCATCACAGGTCTTAAGTTTGG 1038
consensus_10380#1 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||