These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1409 fasta sequence [TTCGCACAGGCACCCAGCCATGCTGAAGTTGGAGCCGGAGTTCCCCGGCCTGCCGCAGCGGTGCGACTCGTGCCGGTCGGCGCCGTGCG-GT-TCTATTGCCTCGCCGATTCGGCGGCGCTCTGTGCCACGTGCGACGCTGACGTGCACTCCGTCAACCCGCTGGCACGCCGCCACCGCCGCGTACCAATGGGCGTGGTGGCTGCCCCCGGCGCCGGGGGAGCCTTCGTCGTCCGCCCTGCAGGCGGTGTCAACTCCTCCTGGCCAATCCGAGAGGGCAGGAGGTGCGACTACGACGATGACGACGCCGACGCCGCTGGGGAGGAAGACGAAGAGGCGACGTCGTGGCTTCTGTTCGACCCGCTCAAGGACTCCTCGGATCAGGGGCTGCCGCCGTTCGGCGACGCGCTGGTGGCCGACTTCCTCAACCTCGGCGGGGGCGCCGGGGAGAAGGAGGACGCGTCGTCGAGCAAGGACTGCAGCAGCAGCCACGGGAAGAGCAGCGAGGGCAGCCACGAGTTCGCCGTGCCCGGCGAGCCCGTACCGGAGCGCCAGGGCTTCGGGGCGGTGAGTATGGACATTACCGACTACGACGCCTCCAATTTCAGGCGCGGGTACAGCTTTGGCGCATCGCTCGGCCACAGCGTTTCGATGTCATCGCTGGAGAACATGAGCACGGTCCCAGACTGCGGTGTGCCAGACATCACCACCTCCTACTTGAGGTCATCCAAGAGCACCATCGACCTCTTCACGGCAGCAGCTGGCTCCCCTGTGGCGGCGCACAGCATAATGTCGCCACCGCAGTTCATGGGCGCCATTGACAGGGAGGCCAGGGTGCACCGGTACAGGGAGAAGAGGAAGACGAGGCGGTTCGAGAAGACCATCAGGTACGCGTCGCGGAAGGCGTATGCCGAGACCCGGCCGAGGATCAAGGGACGCTTCGCCAAGCGCAGCGACACCGACCTTGAGGTCGACCAGTACTTCTCCACCACCGCCGACTCCAGCTGCGGCGTCGTGCCCACGTTCTAGCGAGCAGCTTGGCCGCACGCCTGGAAG-ACAATCAAAGAAGCTCAGGAATGAATATATTCTCCCACTGTATAGTACATCTTGGTTGCTTAGCTATATATATATATATATATATATATATATATGTATAATTCGCCGAATCGCCTCTAAATTTGTGGGAGGTATGAGGCTTCAGCTGTAGGTATATATAGATGCTAGAAAGATGCTCCTTGTAAAATTGTGCAGGAGTAAATGTAATCATGTAGTCATCCCTCCTTCTCCAATCCTTTACAATACATTTCTGTTTTTTTATTCAGCTTAAAAACTACGTTTTGTTTTTTCTCCCGATAACGCTATTGATCTGATGGTAAATTTTGATCAATAATAATTCTCGTTCAGAAAAAAAA] [+] EMBL AB001887 [TTCGCACAGGCACCCAGCCATGCTGAAGTTGGAGCCGGAGTTCCCCGGCCTGCCGCAGCGGTGCGACTCGTGCCGGTCGGCGCCGTGCGCGT TCTATTGCCTCGCCGATTCGGCGGCGCTCTGTGCCACGTGCGACGCTGACGTGCACTCCGTCAACCCGCTGGCACGCCGCCACCGCCGCGTACCAATGGGCGTGGTGGCTGCCCCCGGCGCCGGGGGAGCCTTCGTCGTCCGCCCTGCAGGCGGTGTCAACTCCTCCTGGCCAATCCGAGAGGGCAGGAGGTGCGACTACGACGATGACGACGCCGACGCCGCTGGGGAGGAAGACGAAGAGGCGACGTCGTGGCTTCTGTTCGACCCGCTCAAGGACTCCTCGGATCAGGGGCTGCCGCCGTTCGGCGACGCGCTGGTGGCCGACTTCCTCAACCTCGGCGGGGGCGCCGGGGAGAAGGAGGACGCGTCGTCGAGCAAGGACTGCAGCAGCAGCCACGGGAAGAGCAGCGAGGGCAGCCACGAGTTCGCCGTGCCCGGCGAGCCCGTACCGGAGCGCCAGGGCTTCGGGGCGGTGAGTATGGACATTACCGACTACGACGCCTCCAATTTCAGGCGCGGGTACAGCTTTGGCGCATCGCTCGGCCACAGCGTTTCGATGTCATCGCTGGAGAACATGAGCACGGTCCCAGACTGCGGTGTGCCAGACATCACCACCTCCTACTTGAGGTCATCCAAGAGCACCATCGACCTCTTCACGGCAGCAGCTGGCTCCCCTGTGGCGGCGCACAGCATAATGTCGCCACCGCAGTTCATGGGCGCCATTGACAGGGAGGCCAGGGTGCACCGGTACAGGGAGAAGAGGAAGACGAGGCGGTTCGAGAAGACCATCAGGTACGCGTCGCGGAAGGCGTATGCCGAGACCCGGCCGAGGATCAAGGGACGCTTCGCCAAGCGCAGCGACACCGACCTTGAGGTCGACCAGTACTTCTCCACCACCGCCGACTCCAGCTGCGGCGTCGTGCCCACGTTCTAGCGAGCAGCTTGGCCGCACGCCTGGAAG ACAATCAAAGAAGCTCAGGAATGAATATATTCTCCCACTGTATAGTACATCTTGGTTGCTTAGCTATATATATATATATATATATATATATATATGTATAATTCGCCGAATCGCCTCTAAATTTGTGGGAGGTATGAGGCTTCAGCTGTAGGTATATATAGATGCTAGAAAGATGCTCCTTGTAAAATTGTGCAGGAGTAAATGTAATCATGTAGTCATCCCTCCTTCTCCAATCCTTTACAATACATTTCTGTTTTTTTATTCAGCTTAAAAACTACGTTTTGTTTT ] [+] EMBL OSS12569A [TTCGCACAGGCACCCAGCCATGCTGAAGTTGGAGCCGGAGTTCCCCGGCCTGCNGCAGCGGTGCGACTCGTGCCGGTCGGCGCCGTGCG GTNTCTATNGCCTCGCCGATTCGGGGACGCTCTGTGCCACGTGCGACGCTGACGTGCACTCCGTCAACCCGCTGGCACGACGNCACCGCCGCGTACCAATGGGCGTGGTGGCTGCCCCCGGCGCCGGGGGAGCCTTCGTNGTCCGACCTGCAGGCGGTGTCAACTCCTNCTGGCCAATCCGAGAGGGCAGGAGGTGCGACTACGACGATGAC ] [+] EMBL OSS13576A [TTCGCACAGGCACCCAGCCATGCTGAAGTTGGAGCCGGAGTTCCCCGGCCTGCCGCAGCGGTGCGACTCGTGCCGGTCGGCGCCGTGCG GTNTCTATTGCCTCGCCGATTCGG GGCGCTCTGTGCCACGTGCGACGCTGACGTGCACTCCGTCAACCCGCTGGCACGCCGCCACCGNCGCGTACCAATGGGCGTGGTGGCTGCCCCCGGCGNCGGGGGAGCCTTCGTCGTCCGCCCTGCAGGCGGTGTCAACTCCTCCTGGCCAATCCGAGAGGGCAGGAGGTGCGACTACGACGATGACGACGCCGACGCCGCTGGGGAGGAAGACG AGAGGCGACGTCGTGGCTTCTGTTCGACCCG TNAAGGACTTCTCGGATCAAGGGt ] [+] EMBL AU174681 [ GGGGCGGTGAGTATGGACATTACCGACTACGACGCCTCCAATTTCAGGCGCGGGTACAGCTTTGGCGCATCGCTCGGCCACAGCGTTTCGATGTCATCGCTGGAGAACATGAGCACGGTCCCAGACTGCGGTGTGCCAGACATCACCACCTCCTACTTGAGGTCATCCAAGAGCACCATCGACCTCTTCACGGCAGCAGCTGGCTCCCCTGTGGCGGCGCACAGCATAATGTCGCCACCGCAGTTCATGGGCGCCATTGACAGGGAGGCCAGGGTGCACCGGTACAGGGAGAAGAGGAAGACGAGGCGGTTCGAGAAGACCATCAGGTACGCGTCGCGGAAGGCGTATGCCGAGACCCGGCCGAGGATCAAGGGACGCTTCGCCAAGCGCAGC ] [-] EMBL CB678870 [ AGCATAATGTCGCCACCGCAGTTCATGGGCGCCATTGACAGGGAGGCCAGGGTGCACCGGTACAGGGAGAAGAGGAAGACGAGGCGGTTCGAGAAGACCATCAGGTACGCGTCGCGGAAGGCGTATTTCGAGACCCGGCCGAGGATCAAGGGAGGGTTAGCCAAGCGCAGCGACTCCGACCTTGAGGTCGACCAGTAATTCTCCACCTCCGCGGACTCCAGGTGCGGAGTCGTGCCCACGTTCTAGTGAGCAGCTTGGCCGCACGCGTGGAAGTACAATCAAAGAAGCTCAGGAATGAATATATTCTCCCACGGTATAGTGCATCTTGGTTGGCTAGCTATATATATATATATATATATATATATATATGTATAATTCGCCGAATCGCCTCTAAATTTGTGGGAGGTATGAGGCTTCAGCTGTAGGTATATATAGATGATAGAAAGATGCTCCTTGTAAAATTGTGCAGGAGTAAAGGTAATCATGTAGTCATCCCTCCTTCTCCAATCATTTACAATACATTTGCGTTT ] [+] EMBL AU174680 [ CAAGCGCAGCGACNCCGACCTTGAGGTCGACCAGTACTTCTCCACCACCGCCGACTCCAGCTGCGGCGTCGTGCCCACGTTCTAGCGAGCAGCTTGGCCGCACGCCTGGAAG ACAATCAAAGAAGCTCAGGAATGAATATATTCTCCCNCTGTATAGTACATCTTGGTTGCTTAGCTATATATATATATATATATATATATATATATGTATAATTCGCCGAATCGCCTCTAAATTTGTGGGAGGTATGAGGCTTCAGCTGTAGGTATATATAGATGCTAGAAAGATGCTCCTTGTAAAATTGTGCAGGAGTAAATGTAATCATGTAGTCATCCCTCCTTCTCCAATCCTTTACAATACATTTCTGTTTTTTTATTCAGCTTAAAAACTACGTTTTGTTTTTTCTCCCGATAACGCTATTGATCTGATGGTAAATTTTGATCAATAATAATTCTCGTTCAGAAAAAAAA] [+] EMBL AU032631 [ cnAGGAATGAATATATTCTCCNACTGTATAGTACATCTTGGTTGCTTAGNTATATATATATATATATATATATATATATATGTATAATTCGCCGANTCGCCTCTAAATTTNAANAAGNTATGANNCCCCCCCTGTAGGTATATATAGATGCTAGAAAGATGCTCCTTGTAAAATTGTGCAGGAGTAAATGTAATNATGTAGTCATCCCTCCTTCTCCAATCCTTTACAATACATTTCTGTTTTTTTATTCAGCTTAAAAACTACGTTTTGTTTTTTCTCCCGATAAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||