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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1121 fasta sequence
[GATCTGGGGGCAAATCTGGCAGGCGGAGCGGTGGGGCTGCGGGCGAGGGGGAGGGCGGGGGGCTGGGCGGACGGCGCGGAGGGAGGGGAGGAGGGGGAGGACTGCAGGGGGCTCAGGCCCTGGCGGCGGAGGCTGCTCGCGTCCATGGCGCTCTCCTGGCCCTCGGCCATCCGCCTCGCCGTCGCCACCGTGCTCCTCGCCGCGGTCGGCGTCGCGCTTTTCACGCTCCCCGTTGACAAGATTTTGAAGGACTTTCTGGTTTGGATCAAGGATAACTTGGGTCCATGGGGTCCTCTGGTATTGGCTCTTGCTTACGTCCCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTTGGAGGAGGTTATCTGTTTGGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACAATTGGTGCAACTGCTGCATTTTTGCTTGGCAGAACGATAGGAAGGCCATATGTTCTCTCCAAATGCAAAGATTATCCCAAGTTTCAAGCGGTAGCTATTGCTATCGAAAGGTCTGGCTTCAAGATTGTGTTGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTGTTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATGCCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACTCATGGCTGGAGTGAGATCTCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTGTCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAAATCTTCTTTGGAGAAGGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAACACTACATAATTTCTTAATCCACGAGATAACAT]
[+] EMBL AK069576 [GATCTGGGGGCAAATCTGGCAGGCGGAGCGGTGGGGCTGCGGGCGAGGGGGAGGGCGGGGGGCTGGGCGGACGGCGCGGAGGGAGGGGAGGAGGGGGAGGACTGCAGGGGGCTCAGGCCCTGGCGGCGGAGGCTGCTCGCGTCCATGGCGCTCTCCTGGCCCTCGGCCATCCGCCTCGCCGTCGCCACCGTGCTCCTCGCCGCGGTCGGCGTCGCGCTTTTCACGCTCCCCGTTGACAAGATTTTGAAGGACTTTCTGGTTTGGATCAAGGATAACTTGGGTCCATGGGGTCCTCTGGTATTGGCTCTTGCTTACGTCCCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTTGGAGGAGGTTATCTGTTTGGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACAATTGGTGCAACTGCTGCATTTTTGCTTGGCAGAACGATAGGAAGGCCATATGTTCTCTCCAAATGCAAAGATTATCCCAAGTTTCAAGCGGTAGCTATTGCTATCGAAAGGTCTGGCTTCAAGATTGTGTTGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTGTTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATGCCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACTCATGGCTGGAGTGAGATCTCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTGTCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAAATCTTCTTTGGAGAAGGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAACACTACATAATTTCTTAATCCACGAGATAACAT]
[+] EMBL AK058607 [ TGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTGTTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGTTGGCTTCTTGGCTGGGGATGATGCCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACTCATGGCTGGAGTGAGATCTCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTGTCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAAATCTTCTTTGGAGAAGGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAACACTACATAATTTCTTAA ]
[+] EMBL AU173803 [ GTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATGCCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACTCATGGCTGGAGTGAGATCTCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTGTCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAAATCTTCTTTGGAGAAGGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAa ]
consensusID : consensus_10391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[TGAGATCTCAACAACTCGATGGGTGAGTATCACTATNGCATTGNCTGTATTATGTCGTGGTTTTAGCACTACACGATATTTTTTTTCTATAATTGGTCATAAGNTTAATCTGAAGTGTGAAAGGGAAATATTGTACTTCAGGACAAGTAGGCTGCATTCAATAATAAGATTTTTACTATTAAGGGAAAAAATATACGAAAAGGAGAAAAGGAATTCCTTTTTTTTCCTTATGACCAATTACTCAAGCAACACCCCTCAGATTATTCTTGTTAGGGTTTTTTTAAAAGTAGATACCATAATACATTGACGCAAATGACTTTGAGTTTTAGTGACTCTGCTGACACTAATGCTTAATTCTTCTTTTCAGATTCTCATAATATCTGGCTTCATCTTGTCTGGTAAGTGTTGTTGTCATTTTGTGGCCAATATTCATGACATTTTCACTAAATACAGCTATAGCTCAAATCTTGGTTACGCTGTTTAGAGATAATTNAATGATCATTTGCTTTGCTTGGTTAGTCATCTGAGCTACTCTTTTTTTAGGTAGATTTGTTTTTCCTGAAGATACGCTGAACTAAACAAAGTTTCTTTATCATCTTAGCATATGCGTTGTTGACGACTTTTTCATGGTCCTGCAGNTGTTTTGATTGNATGNGTTACAAGAATNGCAAAATCTTCTCTGGAGAAAGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGNTTNCCTGTGGTGGGCCTCTCCCTCGGGATTTGCAACAACCCCCTTGG]
[+] EMBL CA764991 [TGAGATCTCAACAACTCGATGGGTGAGTATCACTATNGCATTGNCTGTATTATGTCGTGGTTTTAGCACTACACGATATTTTTTTTCTATAATTGGTCATAAGNTTAATCTGAAGTGTGAAAGGGAAATATTGTACTTCAGGACAAGTAGGCTGCATTCAATAATAAGATTTTTACTATTAAGGGAAAAAATATACGAAAAGGAGAAAAGGAATTCCTTTTTTTTCCTTATGACCAATTACTCAAGCAACACCCCTCAGATTATTCTTGTTAGGGTTTTTTTAAAAGTAGATACCATAATACATTGACGCAAATGACTTTGAGTTTTAGTGACTCTGCTGACACTAATGCTTAATTCTTCTTTTCAGATTCTCATAATATCTGGCTTCATCTTGTCTGGTAAGTGTTGTTGTCATTTTGTGGCCAATATTCATGACATTTTCACTAAATACAGCTATAGCTCAAATCTTGGTTACGCTGTTTAGAGATAATTNAATGATCATTTGCTTTGCTTGGTTAGTCATCTGAGCTACTCTTTTTTTAGGTAGATTTGTTTTTCCTGAAGATACGCTGAACTAAACAAAGTTTCTTTATCATCTTAGCATATGCGTTGTTGACGACTTTTTCATGGTCCTGCAGNTGTTTTGATTGNATGNGTTACAAGAATNGCAAAATCTTCTCTGGAGAAAGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGNTTNCCTGTGGTGGGCCTCTCCCTCGGGATTTGCAACAACCCCCTTGG]
consensusID : consensus_10391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[TCTGGTATTGGCTCTTGCTTACGTCCCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTTGGAGGAGGTTATCTGTTTGGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACAATTGGTGCAACTGCTGCATTTTTGCTTGGCAGAACGATAGGAAGGCCATATGTTCTCTCCAAATGCAAAGATTATCCCAAGTTTCAAGCGGTAGCTATTGCTATCGAAAGGTCTGGCTTCAAGATTGTGTTGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTGTTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATGGTATGCCAATTTCTTCTTATTTAAGCAATTTTTATGGGACCAAGCTACATACTGGTTGGCCAGTGAACTTGGCTCTTATCATCTGC]
[+] EMBL CF324388 [TCTGGTATTGGCTCTTGCTTACGTCCCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTTGGAGGAGGTTATCTGTTTGGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACAATTGGTGCAACTGCTGCATTTTTGCTTGGCAGAACGATAGGAAGGCCATATGTTCTCTCCAAATGCAAAGATTATCCCAAGTTTCAAGCGGTAGCTATTGCTATCGAAAGGTCTGGCTTCAAGATTGTGTTGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTGTTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATGGTATGCCAATTTCTTCTTATTTAAGCAATTTTTATGGGACCAAGCTACATACTGGTTGGCCAGTGAACTTGGCTCTTATCATCTGC]
consensusID : consensus_10391#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 237 fasta sequence
[GAAGGAGTAGAAACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAAAAA]
[+] EMBL CF332134 [GAAGGAGTAGAAACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAAAA ]
[-] EMBL CF332135 [ GTGGTGGCCTCTCCCTCGGATTTGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTGTTGTTTACAACTTTACATGTACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAAAAGGAAAGGAAAAATTGTATTGTTAGGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10391#0 GATCTGGGGGCAAATCTGGCAGGCGGAGCGGTGGGGCTGCGGGCGAGGGGGAGGGCGGGG 60
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 GGCTGGGCGGACGGCGCGGAGGGAGGGGAGGAGGGGGAGGACTGCAGGGGGCTCAGGCCC 120
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 TGGCGGCGGAGGCTGCTCGCGTCCATGGCGCTCTCCTGGCCCTCGGCCATCCGCCTCGCC 180
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 GTCGCCACCGTGCTCCTCGCCGCGGTCGGCGTCGCGCTTTTCACGCTCCCCGTTGACAAG 240
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 ATTTTGAAGGACTTTCTGGTTTGGATCAAGGATAACTTGGGTCCATGGGGTCCTCTGGTA 300
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 TTGGCTCTTGCTTACGTCCCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTT 360
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 GGAGGAGGTTATCTGTTTGGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACA 420
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 ATTGGTGCAACTGCTGCATTTTTGCTTGGCAGAACGATAGGAAGGCCATATGTTCTCTCC 480
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 AAATGCAAAGATTATCCCAAGTTTCAAGCGGTAGCTATTGCTATCGAAAGGTCTGGCTTC 540
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 AAGATTGTGTTGTTATTAAGGCTTGTTCCTTTACTTCCGTTCAACATGTTGAACTACCTG 600
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 ------------------------------------------------------------
consensus_10391#0 TTGTCCGTTACTCCTGTTGGCATTGGAGAGTACATGCTGGCTTCTTGGCTGGGGATGATG 660
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 -----------------TGAGATCTCAACAACTCGATGGGTGAGTATCACTATNGCATTG 43
consensus_10391#0 CCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACT 720
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 -----------------------------------TCTGGTATTGGCTCTTGCTTACGTC 25
consensus_10391#1 NCTGTATTATGTCGTGGTTTTAGCACTACACGATATTTTTTTTCTATAATTGGTCATAAG 103
consensus_10391#0 CATGGCTGGAGTGAGATCTCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTG 780
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 CCTTTGACGGTATTGGCTGTTCCAGCATCCATACTTACACTTGGAGGAGGTTATCTGTTT 85
consensus_10391#1 NTTAATCTGAAGTGTGAAAGGGAAATATT-GTACTTCAGGACAAGTAGGCTGCATTCAAT 162
consensus_10391#0 TCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAAATCTTCTTTGGAGAAGGCATTG 840
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 GGCCTGCCTGTTGGGTTTGTTGCTGATTCCATTGGAGCAACAATTGGTGCAACTGCTGCA 145
consensus_10391#1 AATAAGATTTTTACTATTAAGGGAAAAAATATACGAAAAGGAGAAAAGGAATTCCTTTTT 222
consensus_10391#0 GCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTG 900
consensus_10391#3 ---------GAAGGAGTAGAA-----ACAGCTTCCTGTGGTGGCCTCTCCCTCGGATTTG 46
consensus_10391#2 TTTTTGCTTGGCAGAACGATAGG---AAGGCCATATGTTCTCTCCAAATGCAAAGATTAT 202
consensus_10391#1 TTTCCTTATGACCAATTACTCAAGCAACACCCCTCAGATTATTCTTGTT--AGGGTTTTT 280
* * * * * * **
consensus_10391#0 CAACAACCCCTTGTGATCAGA-ATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTG 959
consensus_10391#3 CAACAACCCCTTGTGATCAGA-ATTGACACGTCAAATGAAGATCATGAGAAGTGAATCTG 105
consensus_10391#2 CCCAAGTTTCAAGCGGTAGCT-ATTGCTAT-CGAAAGGTCTGGCTTCAAGATTGTGT-TG 259
consensus_10391#1 TTAAAAGTAGATACCATAATACATTGACGCAAATGACTTTGAGTTTTAGTGACTCTGCTG 340
* * **** * * * **
consensus_10391#0 TTGTTTACAACTTTACATGTACATT---CTTTG-----GCTGTTCAATCTGTATCACTTT 1011
consensus_10391#3 TTGTTTACAACTTTACATGTACATT---CTTTG-----GCTGTTCAATCTGTATCACTTT 157
consensus_10391#2 TTATTAAGGCTTGTTCCTTTACTTC---CGTTCAACATGTTGAACTACCTGTTGTCCGTT 316
consensus_10391#1 ACACTAATGCTTAATTCTTCTTTTCAGATTCTCATAATATCTGGCTTCATCTTGTCTGGT 400
* * * * * * * * * *
consensus_10391#0 ACAC--TGTAGTTTTTGCCAGATCCATTTT---GCCAGTAAAAGAAAAGAAAAAGGAAAG 1066
consensus_10391#3 ACAC--TGTAGTTTTTGCCAGATCCATTTT---GCCAGTAAAAGAAAAGAAAAAGGAAAG 212
consensus_10391#2 ACTCC-TGTTGGCATTGGAGAGTACATGCT---GGCTTCTTGGCTGGGGATGATGGTATG 372
consensus_10391#1 AAGTGTTGTTGTCATTTTGTGGCCAATATTCATGACATTTTCACTAAATACAGCTATAGC 460
* *** * ** ** * * * * *
consensus_10391#0 GAAAAATTGTATTGT-T-AGGTAACACTACATAATTTCTTAATCCACGAGATAACAT--- 1121
consensus_10391#3 GAAAAATTGTATTGT-T-AGGTAAAAA--------------------------------- 237
consensus_10391#2 CCAATTTCTTCTTAT-TTAAGCAATTTTTATGGGACCAAGCTACATACTGGTTGGCCAGT 431
consensus_10391#1 TCAAATCTTGGTTACGCTGTTTAGAGATAATTNAATGATCATTTGCTTTGCTTGGTTAGT 520
** ** *
consensus_10391#0 ------------------------------------------------------------
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 GAACTTGGCTCTTATCATCTGC-------------------------------------- 453
consensus_10391#1 CATCTGAGCTACTCTTTTTTTAGGTAGATTTGTTTTTCCTGAAGATACGCTGAACTAAAC 580
consensus_10391#0 ------------------------------------------------------------
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 AAAGTTTCTTTATCATCTTAGCATATGCGTTGTTGACGACTTTTTCATGGTCCTGCAGNT 640
consensus_10391#0 ------------------------------------------------------------
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 GTTTTGATTGNATGNGTTACAAGAATNGCAAAATCTTCTCTGGAGAAAGCATTGGCTGAG 700
consensus_10391#0 ------------------------------------------------------------
consensus_10391#3 ------------------------------------------------------------
consensus_10391#2 ------------------------------------------------------------
consensus_10391#1 AATGGAGATGCAGGAATTCCACAGNTTNCCTGTGGTGGGCCTCTCCCTCGGGATTTGCAA 760
consensus_10391#0 ------------
consensus_10391#3 ------------
consensus_10391#2 ------------
consensus_10391#1 CAACCCCCTTGG 772
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||