|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence
[ACGAGGCTCTCGAAACCCCACGAACGCGACCACCGCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA-GAACTATGGGAACATGTACAAAAAC-TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGTGGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTGGGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA]
[+] EMBL BP184964 [ACGAGGCTCTCGAAACCCCACGAACGCGACCACCGCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAAGGAACTATGGGAACATGTACAAAAACTTTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGA ]
[+] EMBL BP184920 [ acgaggCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA GAACTATGGGAACATGTACAAAAAC TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGG ]
[+] EMBL CA758452 [ GACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGGCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA GAACTACGGGAACATGTACAAAAAC TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGGGAACTACTGAACCTGGCTTGGGTTATCCTTCCATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGTGGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTGGGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA]
consensusID : consensus_10395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence
[AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGCGCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF324466 [AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGCGCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTC ]
[+] EMBL AU181868 [ CCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCNCCAGGTGGTCGTTATGATCCAATTGGTCCNCCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGNGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTTTTCCAGCCGGGGCCGCACGGGCCCTTTTGAGATTCAGAGGCCCNCCTCCTCCCCNCCGTTTTTGAATAACCCTGCCTTGCTTNTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[AGTCTGATTTACATTTGTTTCATACAACAGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTGCTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA]
[+] EMBL BP184742 [AGTCTGATTTACATTTGTTTCATACAACAGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTGCTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA]
consensusID : consensus_10395#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[CCCACGAACGCGACCACCGCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTNCGCGGCGCCCACGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGCCGTCGGCCCCGCCGCGCTCAACGACCCCCCGGCCTNAAGTGAAGAGGAGGTGGGGATTNATGGTTGGAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGANGAAGGGGCAAAGAAGAAACGGGTATTTGGTAAAANTGTCTTTGTGATTCGGTGATGGTCCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG]
[+] EMBL OSC139 [CCCACGAACGCGACCACCGCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTNCGCGGCGCCCACGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGCCGTCGGCCCCGCCGCGCTCAACGACCCCCCGGCCTNAAGTGAAGAGGAGGTGGGGATTNATGGTTGGAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGANGAAGGGGCAAAGAAGAAACGGGTATTTGGTAAAANTGTCTTTGTGATTCGGTGATGGTCCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10395#0 ------------------------------------------------------------
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAG 60
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 ------------------------------------------------------------
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 GTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCT 120
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 ------------------------------------------------------------
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 GGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGC 180
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 --------------------------ACGAGGCTCTCGAAACCCCACGAACGCGACCACC 34
consensus_10395#3 ------------------------------------------CCCACGAACGCGACCACC 18
consensus_10395#1 GCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAA 240
consensus_10395#2 ---------------------AGT-CTGATTTACATTTGTTTCATACA-ACAGGTCCAAA 37
* * * ***
consensus_10395#0 GCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGAC 94
consensus_10395#3 GCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGAC 78
consensus_10395#1 CGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCC--TGGGAGT 298
consensus_10395#2 CGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCC--TGGGAGT 95
*** * * * **** ** * ** * * **** * ** * ***
consensus_10395#0 CGACGCCGCCGCGATGGCCGTCGTGA---AGGCGGCGCGCCCGGCCTTCCGCGGCGCCCA 151
consensus_10395#3 CGACGCCGCCGCGATGGCCGTCGTGA---AGGCGGCGCGCCCGGCCTTNCGCGGCGCCCA 135
consensus_10395#1 --GTTCCACCA-GGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTG-- 353
consensus_10395#2 --GTTCCACCA-GGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTG-- 150
** ** * *** *** *** * ** * ** * ** * *
consensus_10395#0 CGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGC 211
consensus_10395#3 CGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGC 195
consensus_10395#1 -AACCTTCTCGCTTTGTGAGGCGTC--CGAGGCCTCCAGCTGGGACTACTCACCCAG-AC 409
consensus_10395#2 -AACCTTCTCGCTTTGTGAGGCGTC--CGAGGCCTCCAGCTGGGACTACTCACCCAG-AC 206
** **** ** * * * ** * * * * * ***** * * * *
consensus_10395#0 CGTCGGCCCCGCCGCGCTCACCGACCCC--CCGCCCTCAGGTGAAGAGG---AGGTGGGG 266
consensus_10395#3 CGTCGGCCCCGCCGCGCTCAACGACCCC--CCGGCCTNAAGTGAAGAGG---AGGTGGGG 250
consensus_10395#1 CTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTC 469
consensus_10395#2 CTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTC 266
* * * * ** * * * * ** ** * * ***** * *
consensus_10395#0 ATTGATGGTTG-GAACAGCA-TGGATAATTGTTATGCATTTTT-GTACATCAA----GGA 319
consensus_10395#3 ATTNATGGTTG-GAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGA 309
consensus_10395#1 CCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGA 529
consensus_10395#2 CCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGA 326
* ** *** * * ** * * * * * * * ** **
consensus_10395#0 GGAGAGGGGCAAGAAGAAACGGGTATT-G-GTAAAAT-GTCTG-GTGAT-CGGTGATG-T 373
consensus_10395#3 NGAAGGGGCAAAGAAGAAACGGGTATTTG-GTAAAANTGTCTTTGTGATTCGGTGATGGT 368
consensus_10395#1 GATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGC 589
consensus_10395#2 GATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGC 386
* ** ** * * * * ** * **
consensus_10395#0 CCTTGCCA-TTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGA 432
consensus_10395#3 CCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG------------------------ 404
consensus_10395#1 GAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGT 649
consensus_10395#2 GAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGT 446
* * ****** * * *
consensus_10395#0 TCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAAGAACTATGGGAACATGTACAAAA 492
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ATCAAAAAAAAAAAAAAAAAAAA------------------------------------- 672
consensus_10395#2 ATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTG 506
consensus_10395#0 ACTTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGG 552
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 CTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA 566
consensus_10395#0 ATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAA 612
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 ATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTC 672
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 ATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGT 732
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 GGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTG 792
consensus_10395#3 ------------------------------------------------------------
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 GGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA 838
consensus_10395#3 ----------------------------------------------
consensus_10395#1 ----------------------------------------------
consensus_10395#2 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||