These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA] [+] EMBL CB632284 [GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA] consensusID : consensus_10397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 612 fasta sequence [CACAACTGTAGCATTTTAATTCACGTGAG-G-AATATTGACAATGTAGCGGTAGAACAAGGATAAGG-TCAAGACCTACTTTTACACGGAGTA-CACACAATAATTACAAAAATG-AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG-CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA] [-] EMBL AK065242 [CACAACTGTAGCATTTTAATTCACGTGAG G AATATTGACAATGTAGCGGTAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAAC TTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTCTTTTCCTTCTCAAGCTTATCGTAAGCTATGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA] [-] EMBL CA766246 [ cCANCTGTAGCNTTTNANTNCNCGTGAG GAAATATTGNCAATGAAGCGGTAGAACAAGGAAAAGGNTCAAGACCTACTTTTACCCGGAGTACCCCCCAATANTTCCAAAAATGAAAAATGAAGGACCCGNCACCATTGTCTGAAATTGCACTCCAGCCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTAA] [+] EMBL CB625676 [ ATTTTAATTCACGTGCGTG AATATTGACAATGTAGCGGTAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA ] [+] EMBL CB629014 [ ACGTGAG G AATATTGACAATGCATTGGAAGAACAAGGATAAGG TCAAGACCTACTTTTACACGGAGTA CACACAATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAGCAACAGTTTTTGCCAATTCCTTTCTGCGGTCAGAAGTCAATGGTGGAACAGTGACTCGAATCACTTCTCCATCATTGCTTGGTGTA ] [+] EMBL CB680721 [ TAAGG TCAAGACCTACTTTTACACGGAGTA CACACCATAATTACAAAAATG AAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAG CCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTGCTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAGCGGACAAATCCTTCACGTTATCTTCAGAAAGTTTCTTTTCCTTCTCAAGCTTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCAGCTAATTTAACAACAGATTTTGCCAA ] consensusID : consensus_10397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTGCTTTTGGATACTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGGGANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCCTCNCCCAGCTTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCNCCTATTTTACACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACCCCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT] [+] EMBL BE229056 [CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGGTAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAATGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATCCGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAATTCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAACTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTGCTTTTGGATACTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGGGANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCCTCNCCCAGCTTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCNCCTATTTTACACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACCCCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10397#0 GGCGATAAATTCACAACTGTAGCATTTTAATTCCCGTGAGGAATATTGACAATGTAGCGG 60 consensus_10397#1 -----------CACAACTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGG 49 consensus_10397#2 ----------------CTGTAGCATTTTAATTCACGTGAGGAATATTGACAATGTAGCGG 44 ***************** ************************** consensus_10397#0 TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 120 consensus_10397#1 TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 109 consensus_10397#2 TAGAACAAGGATAAGGTCAAGACCTACTTTTACACGGAGTACACACAATAATTACAAAAA 104 ************************************************************ consensus_10397#0 TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 180 consensus_10397#1 TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 169 consensus_10397#2 TGAAAATGAAGGACACGGCAACATTGTCTGAAATTGCACTCCAGCCCAAAAAGATGCATC 164 ************************************************************ consensus_10397#0 CGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 240 consensus_10397#1 CGGCAAAATGCCGGCCATCAGAACGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 229 consensus_10397#2 CGGCAAAATGCCGGCCATCAGAAAGATGGAAAAGGCTCAAGAAATCTGTGACCGCATAAT 224 *********************** ************************************ consensus_10397#0 TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 300 consensus_10397#1 TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 289 consensus_10397#2 TCACCGTGTTAGCTGAGGACATTGTTTTCTTCGGCTTCATCTACTTCGCAGGAAGATGAA 284 ************************************************************ consensus_10397#0 CTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTG 360 consensus_10397#1 CTCACCAGTTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAGTTCCTGTTCCTTCTG 349 consensus_10397#2 CTCACCAATTTCAAGATTAAAACCTGGTGTCTAAATTTTCATGAATTCCCGTTCCCTCTG 344 ******* ************************************ **** ***** **** consensus_10397#0 CTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAG-CGG 419 consensus_10397#1 CTTTTGGATAGCTTCGATCTTTTTCATGTACTCGTCAGTAACTTTTTGTAGATCAG-CGG 408 consensus_10397#2 CTTTTGGATA--CTCCATCTTTTTCCTGTTCTCCTCCAGTACTTTTTGTGAATTANGCGG 402 ********** ** ********* *** *** ** ********* ** * *** consensus_10397#0 ACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTCTGAGAGGGTGAACCTTCTCAAGC 479 consensus_10397#1 ACAAATCCTTCACGTTATCTTCAGAAAGTTTTTTTTC-------------CTTCTCAAGC 455 consensus_10397#2 GANAATCCCTCCNCNTTTCTTCCCAAAATTCCTTTCC--------------TCNCCCAGC 448 ***** ** * ***** *** ** *** * * * *** consensus_10397#0 TTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCA 539 consensus_10397#1 TTATCGTAAGCTTTGATGGCATCTCTTCTTATGTTCCTTATAGCAACCTTGCCTTCTTCA 515 consensus_10397#2 TTNTCGTAAGCTTTNAAAGNGNCNCTCCNTATNTTCCCTNAANACACCCTGGCTCNTCCN 508 ** *********** * * * ** * *** **** * * *** ** ** * * consensus_10397#0 GCTAATTTAGCAACAGTTTTTGCCAATTCCTTTC-TGCGGTCAGAAGTCAATGGTGGAAC 598 consensus_10397#1 GCTAATTTAGCAACAGTTTTTGCCAATTCCTTTC-TGCGGTCAGAAGTCAATGGTGGAAC 574 consensus_10397#2 CCTATTTTAC--ACAGNTTTTGCCATCCTTCCNCGCCCAATCNTGNNGAAATGACCAACC 566 *** **** **** ******** * * ** **** * * consensus_10397#0 AGTGACTCG--AATCACTTCTCCATCATTGCTTGGTGTA- 635 consensus_10397#1 AGTGACTCG--AATCACTTCTCCATCATTGCTTGGTGTAA 612 consensus_10397#2 CCCCCCTTGTTGGTTNCCCCNNANNGAGCNCNTGTTT--- 603 ** * * * * * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||