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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1691 fasta sequence
[AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAGTTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC-GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA-GGCAACCCCATAGTTAGA-TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG-GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCTAAAAAAAAAAAAA]
[+] EMBL CB667297 [AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAGTTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCNGGAG TTGTTCAAT ]
[+] EMBL AK068123 [ GCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCAAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA GGCAACCCCATAGTTAGA TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATC ]
[+] EMBL AU065441 [ ATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATNCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGNCAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTtga ]
[+] EMBL OSC28481 [ ACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAGGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATG TTATCAAAACAGTTCTGATA ]
[+] EMBL AU101650 [ TTTTCTTCTCTTCACAAGTCCGNTAATTCACATGCGTCCAGATGAAGATGACCCTGAATNCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTNCCCGGCCTNATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGNTTNCNCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA GGCAACCCCATAGTTAGA TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCTAAAAAAAAAAAAA]
[+] EMBL AU162524 [ TTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACANGGCAACCCCATAGTTAGANTGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGNGTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAAa ]
consensusID : consensus_10404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence
[AGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATGTAAGTATTTATTTTTGTTACTGCACCAGTTTATTTTTAATTCAAAGTTCTATTTGCAGCTGATTCCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACCCCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAGCCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA]
[-] EMBL CB667298 [AGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATGTAAGTATTTATTTTTGTTACTGCACCAGTTTATTTTTAATTCAAAGTTCTATTTGCAGCTGATTCCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACCCCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAGCCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10404#0 AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAG 60
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATG 120
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCG 180
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 ATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCC 240
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTA 300
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAAC 360
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 ATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGG 420
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 CTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATG 480
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAA 540
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 CTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAG 600
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 CAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTG 660
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGA 720
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 TCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTG 780
consensus_10404#1 ------------------------------------------------------------
consensus_10404#0 CTCTTCACAAAATAAGGGACACATCGGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTA 840
consensus_10404#1 --------------AGAGAAATTCTATAAGAAGGTAACAACTATGC--CAGAACCTTT-- 42
** ** * * * * * ** *** **** * * *
consensus_10404#0 AGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGG 900
consensus_10404#1 -----CCCTCATGAG--CTTGTTGAACGTTTGGAAGAATACCTGGATGTA-AGTATTTAT 94
** * * *** * **** ** ** ** * * * * *** *
consensus_10404#0 TAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTG 960
consensus_10404#1 TTTTGTTACTGCACCA---GTTTATTTTTAATTCAAAG---TTCTATTTGCAGCTGATT- 147
* * * * * * * * * ** ** * *** * **** **
consensus_10404#0 AACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGC 1020
consensus_10404#1 -CCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGC 206
* *** * * *************************************
consensus_10404#0 TCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTA 1080
consensus_10404#1 TCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTA 266
************************************************************
consensus_10404#0 TATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTT 1140
consensus_10404#1 TATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTT 326
************************************************************
consensus_10404#0 GCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCC 1200
consensus_10404#1 GCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCC 386
************************************************************
consensus_10404#0 TTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAAT 1260
consensus_10404#1 TTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAAT 446
************************************************************
consensus_10404#0 TCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGC 1320
consensus_10404#1 TCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGC 506
************************************************************
consensus_10404#0 ATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGG 1380
consensus_10404#1 ATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGG 566
************************************************************
consensus_10404#0 CCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGG 1440
consensus_10404#1 CCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGG 626
************************************************************
consensus_10404#0 GGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACC 1500
consensus_10404#1 GGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACC 686
************************************************************
consensus_10404#0 CCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTC 1560
consensus_10404#1 CCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTC 746
************************************************************
consensus_10404#0 AGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAA- 1619
consensus_10404#1 AGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAG 806
********* *************************************************
consensus_10404#0 CCTGGTATGTTAATAAAACCCA-TAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCT 1678
consensus_10404#1 CCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA---------------- 850
********************** ************ *** *
consensus_10404#0 AAAAAAAAAAAAA 1691
consensus_10404#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||