These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1788 fasta sequence [GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT-CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGAAGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGTGGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCTCTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACGCAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGCATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATCGATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTTTACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA-GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC-AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG-AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA-GCAGT-GTGTTGTTGATGAAG-A-AAACCCATACTTGAGGGAGTGGGGTCTT-TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACAGTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT] [+] EMBL AK073382 [GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCCCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGAAGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGTGGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCTCTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACGCAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGCATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATCGATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTTTACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA GCAGT GTGTTGTTGATGAAG A AAACCCATACTTGAGGGAGTGGGGTCTT TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACAGTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT] [-] EMBL BU673192 [ CCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCTCGAAGCGCCCAGGGCCGGGCCGCTCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCG ] [-] EMBL BI305416 [ tTCCTCCGCAACGTCCTAGCCGGCGACGACCTCAACCAGGGCACTTTCGTCCTCCT CTCAGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCT ] [-] EMBL BU673443 [ CGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCTGCTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCT ] [-] EMBL CB619552 [ ACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA GCAGT GTGTTGTTGATGAAG A AAACCCATACTTGAGGGAGTGGGGTCTT TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTACGTTGCATCAA ] [+] EMBL BI796012 [ GAC AGGAGATCATC ACCACGCC TAGGTAC GC AAAG CTGCCCATACA TGGTTACAAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGC AAAAAGTGCAGTATGTAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCACGCAGTGGTGTTGTTGATGAAGCAGAAACCCATACTTGAGGGAGTGGGGTCTTCTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAATACCAGAAGGAGGTATCTGGACTTAAGATCCAAGAA CTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT ] consensusID : consensus_10406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [CGAGACAAGGGGATCATCAACCAGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTGGGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAAAAAAAAAAA] [-] EMBL CA762634 [CGAGACAAGGGGATCATCAACCAGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTGGGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10406#0 GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCG 60 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGA 120 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCT 180 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCT 240 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTT 300 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CGTCCTCCTCTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTC 360 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCA 420 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGT 480 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGA 540 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 AGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGT 600 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 GGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCT 660 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACG 720 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 CAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGC 780 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 ATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATC 840 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 GATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTT 900 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 TACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATA 960 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 TTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGC 1020 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 TCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGA 1080 consensus_10406#1 ------------------------------------------------------------ consensus_10406#0 GCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACC 1140 consensus_10406#1 --------------------------------------CGAGACAAGGGGATCATCAACC 22 * ******* *********** consensus_10406#0 AGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGT 1200 consensus_10406#1 AGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGT 82 ************************************************************ consensus_10406#0 GATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGG 1260 consensus_10406#1 GATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGG 142 ************************************************************ consensus_10406#0 GATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTG 1320 consensus_10406#1 GATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTG 202 ************************************************************ consensus_10406#0 GGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATC 1380 consensus_10406#1 GGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATC 262 ************************************************************ consensus_10406#0 TGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT 1440 consensus_10406#1 TGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT 322 ************************************************************ consensus_10406#0 GGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATT 1500 consensus_10406#1 GGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATT 382 ******** *************************************************** consensus_10406#0 TTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCC 1560 consensus_10406#1 TTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCC 442 ************************************************************ consensus_10406#0 TCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGT 1620 consensus_10406#1 TCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGT 502 ************************************** ********************* consensus_10406#0 GTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCG 1680 consensus_10406#1 GTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCG 562 ******************************************************** *** consensus_10406#0 GGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACA 1740 consensus_10406#1 GGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAA 622 ******************************** *********** ******* **** * consensus_10406#0 GTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT 1788 consensus_10406#1 AAAAAAAAA--------------------------------------- 631 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||