These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1249 fasta sequence [CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA-CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCAGATTCAAAAAAAA] [+] EMBL AK103043 [CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC ] [+] EMBL BF430672 [ TTCTTCCCGACGCTTCATACAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCCGCGGCGGGGAAGGAGCGGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGGCCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCGTGTACATGCGGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGCATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACA ] [+] EMBL CF308567 [ ATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCC ] [+] EMBL AK059428 [ GGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGACCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCA ] [-] EMBL CF308566 [ TGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACCACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCAGATTCAAAAAAAA] [+] EMBL BI800970 [ CTACAAGGCTCAAATATAT ATATGGAATAGATATTAGACAGTG AAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTAC AAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACAGCCAaaaaa ] consensusID : consensus_10412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [GGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTATCCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC] [-] EMBL CF324654 [GGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTATCCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10412#0 CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCG 60 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCT 120 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGG 180 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTC 240 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTT 300 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGC 360 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 AGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCA 420 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 AACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGA 480 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 GTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTAC 540 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 AAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTC 600 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 GAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCC 660 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 AACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGA 720 consensus_10412#1 ----------------------------------------GGAGTCTTTGCCACAGAGGA 20 ******************** consensus_10412#0 GGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTT 780 consensus_10412#1 GGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTT 80 ************************************************************ consensus_10412#0 GTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAA 840 consensus_10412#1 GTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAA 140 ************************************************************ consensus_10412#0 GAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGAT 900 consensus_10412#1 GAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGAT 200 ************************************************************ consensus_10412#0 TCAAG------------------------------------------------------- 905 consensus_10412#1 TCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTAT 260 ***** consensus_10412#0 ----------------------------------AATCCCCAGCACCGTTGAATGTCGTA 931 consensus_10412#1 CCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTA 320 ************************** consensus_10412#0 CTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCT 991 consensus_10412#1 CTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCT 380 ************************************************************ consensus_10412#0 TCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAA 1051 consensus_10412#1 TCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAA 440 ************************************************************ consensus_10412#0 TACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATA 1111 consensus_10412#1 TACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGC 500 *********************************** ** * * ** consensus_10412#0 TGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTAC 1171 consensus_10412#1 TGTCTTTGC--------------------------------------------------- 509 ** * * consensus_10412#0 AAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCAC 1231 consensus_10412#1 ------------------------------------------------------------ consensus_10412#0 CGCCAGATTCAAAAAAAA 1249 consensus_10412#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||