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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1023 fasta sequence
[GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCCGTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCCACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGCAGGATGAGGATGAGGAGGTAGCGCATCGGCGGCGGCGGCGGCGCGACGATGCGGGCACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAAGGCTATCTTAAACCGTGGCGTGTAACAGTTGGAGTTTACATCCTGCATCTTTCTGTACTTCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAATGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTAATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT-GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAGCTGTGCTGCATTGCCAAAAA]
[+] EMBL AK071496 [GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCCGTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCCACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGCAGGATGAGGATGAGGAGGTAGCGCATCGGCGGCGGCGGCGGCGCGACGATGCGGGCACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAAGGCTATCTTAAACCGTGGCGTGTAACAGTTGGAGTTTACATCCTGCATCTTTCTGTACTTCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAATGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTAATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAA ]
[+] EMBL AU031824 [ TCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAA ]
[-] EMBL CF300092 [ ACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCATTGCCAAAAA]
[+] EMBL AA754304 [ cgAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAag ]
consensusID : consensus_10422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[GGACCCTGGGAAAATGTGGCCTCGNCCGGTGGCCGTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGAGGGNCAGAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCAAAAAAAAAAAAAA]
[+] EMBL AU031284 [GGACCCTGGGAAAATGTGGCCTCGNCCGGTGGCCGTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGAGGGNCAGAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCAAAAAAAAAAAAAA]
consensusID : consensus_10422#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence
[GAGAGCACCAGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGA-GGGGCAGAGGTACCTCAAGCCCCAGTGA-TGGTTGGTGCTCACCTAGGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAGATCCAACAAGTACCC]
[+] EMBL AU164791 [GAGAGCACCAGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGA GGGGCAGAGGTACCTCAAGCCCCAGTGA TGGTTGG ]
[+] EMBL OSR19601A [ AGAGCACCAGCACCAGTCACTGCAAATCGNCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTNCAATGGCCGTAGCAGCAGTTAGGGGGCAGAGGTACCTCAAGCCCCAGTTATTGGTTGGTGCTCACCTAGGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAGATCCAACAAGTACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10422#0 GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCC 60
consensus_10422#1 ------------------------------------------------------------
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 GTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCC 120
consensus_10422#1 ------------------------------------------------------------
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 ACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGC 180
consensus_10422#1 ------------------------------------------------------------
consensus_10422#2 ---------------------------------------------------GAGAGCACC 9
consensus_10422#0 AGGATGAGGATGAGGAGGTAGC----GCATCGGCGGCGGCGGCGGCGCGACGATGCGGGC 236
consensus_10422#1 ------------------------------------------------------------
consensus_10422#2 AGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGC 69
consensus_10422#0 ACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAA--G 294
consensus_10422#1 ------------------------------------------------------------
consensus_10422#2 ACT-AAGCATGGGTTCGTCGTGGACACTC-GATCAGAACAAGGTCTTTGAGCTGGCGCTG 127
consensus_10422#0 GCTATCTTAAACCGTGGCGTGT--AACAGTTGGAGTTTACATCCTGCATCTTTCTGTACT 352
consensus_10422#1 ---------------------G--GACCCTGGGA----AAATGTGGCCTCGNCCGGTGGC 33
consensus_10422#2 GCGACATACGGCAAGGACACGCCGGACCGCTGGGA---AAATGTGGCG-CGGGCGGTGGG 183
** ** * ** ** * * **
consensus_10422#0 TCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAA 412
consensus_10422#1 C----GTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGC-----TGGA 84
consensus_10422#2 C----GGTGGC-AAGACAGCGGATGAT-GCGAAGAGGCACTA-TAAGAAGC-----TGGA 231
** * ** * * * * * ** *** ** * ***** ** *
consensus_10422#0 TGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTA 472
consensus_10422#1 AAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAAT--GGCCGT 142
consensus_10422#2 AAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAAT--GGCCGT 289
*** * ** * * * ** *** * * ** * * *
consensus_10422#0 ATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTA 532
consensus_10422#1 AGCAGCAGTGAGGGNCA----GAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTA 198
consensus_10422#2 AGCAGCAGTGAGGGGCA----GAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTA 345
* ** * * ******** *****************************
consensus_10422#0 GGGCT-AGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTA 591
consensus_10422#1 GGGCT-AGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTA 257
consensus_10422#2 GGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAG-ATCCAACAAGTA 404
***** ***** *** ***** ************************* ************
consensus_10422#0 CCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCC 651
consensus_10422#1 CCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCC 317
consensus_10422#2 CCC--------------------------------------------------------- 407
***
consensus_10422#0 TGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGAT 711
consensus_10422#1 TGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGAT 377
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 GATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGA 771
consensus_10422#1 GATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGA 437
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 AGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTG 831
consensus_10422#1 AGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTG 497
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 TACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGC 891
consensus_10422#1 TACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGC 557
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 TTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTA 951
consensus_10422#1 TTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTA 617
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 ATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAGCTGTGCTG 1011
consensus_10422#1 ATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTG 677
consensus_10422#2 ------------------------------------------------------------
consensus_10422#0 CATTGCCAAAAA--- 1023
consensus_10422#1 CAAAAAAAAAAAAAA 692
consensus_10422#2 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||