Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10425 cluster # 10425       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10425#0 length = 1914 sequences # 1  
consensus_10425#1 length = 1522 sequences # 5  
consensus_10425#2 length = 781 sequences # 1  

consensusID : consensus_10425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1914
fasta sequence
                              [CGCAACGCGACTGTGCACACGAGGCCACTCCACTCCTCTCCTTTGCGCTCGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGGGTTTGTAGTCTGCAAGACTGAGACGCTGAGTGTTCTTGTTCGTGTGCCTGTGTGCTTGTGTTCTTCTCGTCAGCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCAGATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTGACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTTGAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGCACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAAGGCTCTCAAGTCTCAAACCTCATCATCATCTTCGTCGCCGTGTCGGCGACCATGGCCGGACACCTGATCTGAGCAATGCCAATCGTGTCGCCGGTGAAGGAGAAGGCGGCGATCGCTTTCGACGCCGGCGAGTAGCCGCCGTCACCGCCGCCGCGATCGATCGAGCAAAGTCACCGGAGGAAGGAGACAGCTTCCGTTGGTTTTGGAAATATTCAGCTCAAGCAGTTGGAGCGAGTCAGTCCAATCCCAACACATCTCGCTCGGATCCCCTCTCTTGGTCGGCAGCCGTCGTTGTCATCGATCGGGAGGCGTTGCCATTGCACAAGCAAAGGAAGCTAACGCGGGCGGCGGCGGTGGCAATGGCCGATCGGCGCCGCAGCGACGGCGGCGGCGGCATGCAGCAGCAGCCGTTCACGTCGCCGGGGCAGGAGAGGGTGTTCGACGGCGGCGGTGTTCCTGGGCAGGTGGCGGCGCCGTATGGGAGTGATTTTGATCAGAGCTCTTACATGGCGCTTCTCGCC]

[+] EMBL AY341852             [CGCAACGCGACTGTGCACACGAGGCCACTCCACTCCTCTCCTTTGCGCTCGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGGGTTTGTAGTCTGCAAGACTGAGACGCTGAGTGTTCTTGTTCGTGTGCCTGTGTGCTTGTGTTCTTCTCGTCAGCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCAGATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTGACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTTGAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGCACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAAGGCTCTCAAGTCTCAAACCTCATCATCATCTTCGTCGCCGTGTCGGCGACCATGGCCGGACACCTGATCTGAGCAATGCCAATCGTGTCGCCGGTGAAGGAGAAGGCGGCGATCGCTTTCGACGCCGGCGAGTAGCCGCCGTCACCGCCGCCGCGATCGATCGAGCAAAGTCACCGGAGGAAGGAGACAGCTTCCGTTGGTTTTGGAAATATTCAGCTCAAGCAGTTGGAGCGAGTCAGTCCAATCCCAACACATCTCGCTCGGATCCCCTCTCTTGGTCGGCAGCCGTCGTTGTCATCGATCGGGAGGCGTTGCCATTGCACAAGCAAAGGAAGCTAACGCGGGCGGCGGCGGTGGCAATGGCCGATCGGCGCCGCAGCGACGGCGGCGGCGGCATGCAGCAGCAGCCGTTCACGTCGCCGGGGCAGGAGAGGGTGTTCGACGGCGGCGGTGTTCCTGGGCAGGTGGCGGCGCCGTATGGGAGTGATTTTGATCAGAGCTCTTACATGGCGCTTCTCGCC]


>consensus_10425#0 CGCAACGCGACTGTGCACACGAGGCCACTCCACTCCTCTCCTTTGCGCTCGCTCTGCTCT GCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCA CGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGC CCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAG GTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTC GGCAAGTGGAATGGAGCATTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTCTGGGTTTGTAGTCTGCAAGACTGAGACGCTGAGTGTTCTTGTTCGTGTGCCTGTG TGCTTGTGTTCTTCTCGTCAGCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGC ACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTG TATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGG GTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGGTAGGA TTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACT GTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTG AAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGC AATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATA ATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCAGAT ATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTGACT AAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTTGAA AAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGCACA ACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGA TATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAG ATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAG AGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTC TTTGAGACTAAAAGGCTCTCAAGTCTCAAACCTCATCATCATCTTCGTCGCCGTGTCGGC GACCATGGCCGGACACCTGATCTGAGCAATGCCAATCGTGTCGCCGGTGAAGGAGAAGGC GGCGATCGCTTTCGACGCCGGCGAGTAGCCGCCGTCACCGCCGCCGCGATCGATCGAGCA AAGTCACCGGAGGAAGGAGACAGCTTCCGTTGGTTTTGGAAATATTCAGCTCAAGCAGTT GGAGCGAGTCAGTCCAATCCCAACACATCTCGCTCGGATCCCCTCTCTTGGTCGGCAGCC GTCGTTGTCATCGATCGGGAGGCGTTGCCATTGCACAAGCAAAGGAAGCTAACGCGGGCG GCGGCGGTGGCAATGGCCGATCGGCGCCGCAGCGACGGCGGCGGCGGCATGCAGCAGCAG CCGTTCACGTCGCCGGGGCAGGAGAGGGTGTTCGACGGCGGCGGTGTTCCTGGGCAGGTG GCGGCGCCGTATGGGAGTGATTTTGATCAGAGCTCTTACATGGCGCTTCTCGCC



consensusID : consensus_10425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1522
fasta sequence
                              [TCTCCCCTTTAAGGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGTAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCAGATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTGACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTTGAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGCACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAGTATGAAGGACAACTTTTACTTCGATAATTCGTAGATTTTCTCCAATGATCTCATTGAAGTGTGCGTACTTAGTCTTGCGGCTTGTTACTCGGTATGCGATAGCAGAGTATATATTTTTGGACAGCTTCATCCTATGCGAATAGGAGAAACTTATGAGAGCAGTGTTTTGCTCTTCATTGGCTAAAATTCTACTAGCATGTCGCATTCATATATTTCCAAGTGGCTTTTTTTCCCTGGTGTGGCTGGGGTAGTTAAACCTTTA-------AA--AAAAAAAAAAAAAAAA]

[+] EMBL CB645769             [TCTCCCCTTTAAGGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGTAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB642923             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCAGATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTGACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTTGAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGCACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAGTATGAAGGACAACTTTTACTTCGATAATTCGTAGATTTTCTCCAATGATCTCATTGAAGTGTGCGTACTTAGTCTTGCGGCTTGTTACTCGGTATGCGATAGCAGAGTATATATTTTTGGACAGCTTCATCCTATGCGAATAGGAGAAAAAGGTGAGAGCAGTGTTTTGCTC                                                                                                                     ]
[-] EMBL CF324890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAGTATGAAGGACAACTTTTACTTCGATAATTCGTAGATTTTCTCCAATGATCTCATTGAAGTGTGCGTACTTAGTCTTGCGGCTTGTTACTCGGTATGCGATAGCAGAGTATATATTTTTGGACAGCTTCATCCTATGCGAATAGGAGAAACTTATGAGAGCAGTGTTTTGCTCTTCATTGGCTAAAATTCTACTAGCATGTCGCATTCATATATTTCCAAGTGGCTTTTTTTCCCTGGTGTGGCTGGGGTAGTTAAACCTTTAGGTTTGGAATTAAAAAAAAAAAAAAAA]
[-] EMBL CB678612             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAGGATATGAAATGACCTTGTTTCCTGGAGGAATGTACATGGGATATCCGACAGACATCGGTAAGATAGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTATTTTCTTGAGACTAAAGTATGAAGGACAACTTTTACTTCGATAATTCGTAGATTTTTTCCAATGATCTCATTGAAGTGTGCGTACCTAGTCTTGCGGCTTGTTACTCGGTATGCGATAGCAGAGTA                                                                                                                                                                                    ]
[+] EMBL AU029806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCTCAAATGATCTCATTGAAGTGTGCGTACTTAGTCTTGCGGCTTGTTACTCGGTATGCGATAGCAGAGTATATATTTTTGGACAGCTTCATCCTATGCGAATAGGAGAAACTTATGAGAGCAGTGTTTTGCTCTTCATTGGCTAAAATTCTACTAGCATGTCGCATTCATATATTTCCAAGTGGCTTTTTTTCCCTGGTGTGGCTGGGGTAGTTAAACCTTTA       AA  AAAAAAAAAAAAAAAA]


>consensus_10425#1 TCTCCCCTTTAAGGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCG CGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCG CGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGG CCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCC GCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGC ACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACG ACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTG TAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCA CTGTAGATAAATACCAGCAGTAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGA GGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATG ATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTAT GTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGG ACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCC CACTTATGTACTCTTCAGATGATGCAGATATCACCAACAGTGATAGAATAGCTCCACTAC TGGGAAGATGGGAAGGCCGTTCTGTGACTAAGAGGAGCGGGGTGTATGGAGCAACACTTT CTGAAGCTGATACGGTGGTTCTCCTTGAAAAGGACCGCAATGGTCAGCTAATTCTGGATA ACATGTCAACAAAATCTGGATCTAGCACAACAACAACTGTTCACTGGACAGGATCAGCAA ATAACAACTTGCTTCAGTTTGATGGAGGATATGAAATGACCTTGTTACCTGGAGGAATGT ACATGGGATATCCGACAGACATCGGTAAGATTGTGAATGACATGGATTCTTTTCATTTGG AGTTCTGCTGGATGGAATCACCAGGAAAGAGGCAGCGGCTTGTGCGGACTTATGACTCAG CTGGTTTGGCTGTTTCATCAACTTACTTCTTTGAGACTAAAGTATGAAGGACAACTTTTA CTTCGATAATTCGTAGATTTTCTCCAATGATCTCATTGAAGTGTGCGTACTTAGTCTTGC GGCTTGTTACTCGGTATGCGATAGCAGAGTATATATTTTTGGACAGCTTCATCCTATGCG AATAGGAGAAACTTATGAGAGCAGTGTTTTGCTCTTCATTGGCTAAAATTCTACTAGCAT GTCGCATTCATATATTTCCAAGTGGCTTTTTTTCCCTGGTGTGGCTGGGGTAGTTAAACC TTTAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10425#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence
                              [CCTTTGCGCTCGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTA]

[+] EMBL CB642922             [CCTTTGCGCTCGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTA]


>consensus_10425#2 CCTTTGCGCTCGCTCTGCTCTGCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCG GCGTCCGCCGCCGCCACCGCACGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCG GCGCGCGTCCCCTGCCCCGGCCCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCC GCGGTGGCCGGCCCGCCGGAGGTGGACGACGACGACGCGATGACCATCGACAATCTCCGC CGCTTCTTCGACGTCAACGTCGGCAAGTGGAATGGAGCATTCTACCAATTCGATGCGCAC GGGAGGGTGCTGCAGGGGATCAGCACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGAC CTCATCAGCCTCCTGCAATCGCTGTATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTA GATGAGGAGGATTCTGAAGAGTGGGTGGAGTACAAAATCAAAGAGACAAACATGTTCACT GTAGATAAATACCAGCAGGTAGGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTAT CAGACTGCTGGAATGCTGGAGACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACT GGTGAAGAATCCCCCAAAAACTTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAG AATTGCCTTTACTCTCGTGAAGGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCA AAGGGAGTGCTCGATATGCTTATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTT A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10425#0      CGCAACGCGACTGTGCACACGAGGCCACTCCACTCCTCTCCTTTGCGCTCGCTCTGCTCT 60
consensus_10425#2      ---------------------------------------CCTTTGCGCTCGCTCTGCTCT 21
consensus_10425#1      ----------------------------------TCTCCCCTTTAAG---GCTCTGCTCT 23
                                                              *****  *   **********

consensus_10425#0      GCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCA 120
consensus_10425#2      GCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCA 81
consensus_10425#1      GCCATGGCGGAGGCGCTCGTCGCCGTCCTCCGGCTCGCGGCGTCCGCCGCCGCCACCGCA 83
                       ************************************************************

consensus_10425#0      CGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGC 180
consensus_10425#2      CGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGC 141
consensus_10425#1      CGCCCTCAAAGCCGCAGCGGCCGCCACGGCTCCTGCGCGGCGCGCGTCCCCTGCCCCGGC 143
                       ************************************************************

consensus_10425#0      CCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAG 240
consensus_10425#2      CCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAG 201
consensus_10425#1      CCGTCCCCGTTCCGCCGCGGCAGGCTCTGCGCGCGGGCCGCGGTGGCCGGCCCGCCGGAG 203
                       ************************************************************

consensus_10425#0      GTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTC 300
consensus_10425#2      GTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTC 261
consensus_10425#1      GTGGACGACGACGACGCGATGACCATCGACAATCTCCGCCGCTTCTTCGACGTCAACGTC 263
                       ************************************************************

consensus_10425#0      GGCAAGTGGAATGGAGCATTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC 360
consensus_10425#2      GGCAAGTGGAATGGAGCATTCTAC------------------------------------ 285
consensus_10425#1      GGCAAGTGGAATGGAGCATTCTAC------------------------------------ 287
                       ************************                                    

consensus_10425#0      TTCTCTGGGTTTGTAGTCTGCAAGACTGAGACGCTGAGTGTTCTTGTTCGTGTGCCTGTG 420
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      ------------------------------------------------------------
                                                                                   

consensus_10425#0      TGCTTGTGTTCTTCTCGTCAGCAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGC 480
consensus_10425#2      ---------------------CAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGC 324
consensus_10425#1      ---------------------CAATTCGATGCGCACGGGAGGGTGCTGCAGGGGATCAGC 326
                                            ***************************************

consensus_10425#0      ACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTG 540
consensus_10425#2      ACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTG 384
consensus_10425#1      ACGCGGCTGTCAGTGAGCACCTACGGGGAGGACGACCTCATCAGCCTCCTGCAATCGCTG 386
                       ************************************************************

consensus_10425#0      TATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGG 600
consensus_10425#2      TATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGG 444
consensus_10425#1      TATATCAAGCAAGCTTCTTCTCAGATATCGTTTGTAGATGAGGAGGATTCTGAAGAGTGG 446
                       ************************************************************

consensus_10425#0      GTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAG---GTA 657
consensus_10425#2      GTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAG---GTA 501
consensus_10425#1      GTGGAGTACAAAATCAAAGAGACAAACATGTTCACTGTAGATAAATACCAGCAGTAGGTA 506
                       ******************************************************   ***

consensus_10425#0      GGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAG 717
consensus_10425#2      GGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAG 561
consensus_10425#1      GGATTCTTTCAAGAGGAAAAGGCATTTGCTCTGAGGTATCAGACTGCTGGAATGCTGGAG 566
                       ************************************************************

consensus_10425#0      ACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAAC 777
consensus_10425#2      ACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAAC 621
consensus_10425#1      ACTGTCCTTCGGGCTGGTGTGCTAGGAGAAGATGATACTGGTGAAGAATCCCCCAAAAAC 626
                       ************************************************************

consensus_10425#0      TTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAA 837
consensus_10425#2      TTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAA 681
consensus_10425#1      TTGAAGATCCCTTCTCGTAAGCCATCTATTGTATGTGAGAATTGCCTTTACTCTCGTGAA 686
                       ************************************************************

consensus_10425#0      GGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTT 897
consensus_10425#2      GGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTT 741
consensus_10425#1      GGCAATGGCCGAGTAAGGGCTTTCCACATCATGGACCCAAAGGGAGTGCTCGATATGCTT 746
                       ************************************************************

consensus_10425#0      ATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCA 957
consensus_10425#2      ATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTA-------------------- 781
consensus_10425#1      ATAATTTTCCATGAAAAGCAGGGATCTGAAGTCCCACTTATGTACTCTTCAGATGATGCA 806
                       ****************************************                    

consensus_10425#0      GATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTG 1017
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      GATATCACCAACAGTGATAGAATAGCTCCACTACTGGGAAGATGGGAAGGCCGTTCTGTG 866
                                                                                   

consensus_10425#0      ACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTT 1077
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      ACTAAGAGGAGCGGGGTGTATGGAGCAACACTTTCTGAAGCTGATACGGTGGTTCTCCTT 926
                                                                                   

consensus_10425#0      GAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGC 1137
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      GAAAAGGACCGCAATGGTCAGCTAATTCTGGATAACATGTCAACAAAATCTGGATCTAGC 986
                                                                                   

consensus_10425#0      ACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGA 1197
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      ACAACAACAACTGTTCACTGGACAGGATCAGCAAATAACAACTTGCTTCAGTTTGATGGA 1046
                                                                                   

consensus_10425#0      GGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGT 1257
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      GGATATGAAATGACCTTGTTACCTGGAGGAATGTACATGGGATATCCGACAGACATCGGT 1106
                                                                                   

consensus_10425#0      AAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGA 1317
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      AAGATTGTGAATGACATGGATTCTTTTCATTTGGAGTTCTGCTGGATGGAATCACCAGGA 1166
                                                                                   

consensus_10425#0      AAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTAC 1377
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      AAGAGGCAGCGGCTTGTGCGGACTTATGACTCAGCTGGTTTGGCTGTTTCATCAACTTAC 1226
                                                                                   

consensus_10425#0      TTCTTTGAGACTAAAAGGCTCTCAAGTCTCAAACCTCATCATCATCTTCGTCGCCGTGTC 1437
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      TTCTTTGAGACTAAAG---TATGAAGGA-CAACTTTTACTTCGATAAT--TCGTAG-ATT 1279
                                                                                   

consensus_10425#0      GGCGACCATGGCCGGACACCTGATCTGAGCAATGCCAATCGTGTCGCCGGTGAAGGAGAA 1497
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      TTCTCCAATGATCTCA---TTGAAGTGTGCGTACTTAGTCTTGCGGCTTGTTACTCGGTA 1336
                                                                                   

consensus_10425#0      GGCGGCGATCGCTTTCGACGCCGGCGAGTAGCCGCCGTCACCGCCGCCGCGATCGATCGA 1557
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      TGCGATAGCAGAGTAT-ATATTTTTGGACAGCT----TCATC--CTATGCGA---ATAGG 1386
                                                                                   

consensus_10425#0      GCAAAGTCACCGGAGGAAGGAGACAGCTTCCGTTGGTTTTGGAAATATTCAGCTCAAGCA 1617
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      AGAAACTTATGAGAGCAGTGTTTTGCTCTTCATTGGCT-----AAAATTCTACT--AGCA 1439
                                                                                   

consensus_10425#0      GTTGGAGCGAGTCAGTCCAATCCCAACACATCTCGCTCGGATCCCCTCTCTTGGTCGGCA 1677
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      TGT----CGCATTCATATATTTCCAAG----------TGGCTTTTTTTCCCTGGT--GTG 1483
                                                                                   

consensus_10425#0      GCCGTCGTTGTCATCGATCGGGAGGCGTTGCCATTGCACAAGCAAAGGAAGCTAACGCGG 1737
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      GCTGGGGTAGTTA---------AACCTTTAAAAAAAAAAAAAAAAAAA------------ 1522
                                                                                   

consensus_10425#0      GCGGCGGCGGTGGCAATGGCCGATCGGCGCCGCAGCGACGGCGGCGGCGGCATGCAGCAG 1797
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      ------------------------------------------------------------
                                                                                   

consensus_10425#0      CAGCCGTTCACGTCGCCGGGGCAGGAGAGGGTGTTCGACGGCGGCGGTGTTCCTGGGCAG 1857
consensus_10425#2      ------------------------------------------------------------
consensus_10425#1      ------------------------------------------------------------
                                                                                   

consensus_10425#0      GTGGCGGCGCCGTATGGGAGTGATTTTGATCAGAGCTCTTACATGGCGCTTCTCGCC 1914
consensus_10425#2      ---------------------------------------------------------
consensus_10425#1      ---------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)