Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10434 cluster # 10434       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10434#0 length = 1540 sequences # 6  
consensus_10434#1 length = 1484 sequences # 1  

consensusID : consensus_10434#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1540
fasta sequence
                              [AGAGAGGAAGAAGGAGAGAAACATCTAGAGTGAATAAGAAAGATGGGGTTCGTCCGTGCCCTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCACGCGAAGGACTACCCCAAGGAGGAGGGCGCGAAGGCGGAGGGGCCGGCCGCCGCCTCGGGGGGCGGCGGCGG-TAGCACCCACGACGTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAGACGGACAGCACCAAGGCGGTCAACGAGGCGTGGACGGCGGCGTGCGCTGGCACCGGCAAGCAGACGATCGTCGTCCCCAAGGGCGACTTCTTGACGGGTCCCCTCAACTTCACCGGGCCATGCAAGGGCGACATCGTCATCCAGCTCGACGGAAACCTGCTCGGCTCCACCGACCTCGCCTTATTCAAGTCGAACTGGATCGAGATCATGCGCCTCGAAAGCCTCGAAATCAGCGGCAAGGGCAAGCTCGACGGCCAGG-GCGCCGCCGTCTGGAGCAAGAACTCCTGCGCCAAGAAATACGACTGCAAGATCCTCCCCAACACTTTGGTGCTGGACTTCGTGAACAACGGTCTCATCAGCGGCATCTCTCTGGTGAACCCCAAGTTCTTCCACATGAACGTGTTCAAGAGTAAGAACATCACCATCAAGGACGTGACCATCACCGCGCCGGGGGACAGCCCGAACACGGACGGCATCCACATGGGCGACTCCTCCAAGATCAGCATCATTGACACGGTCATCGGCACCGGCGATGATTGCATCTCCATCGGCCCCGGCACCGAGGGCGTCAACATCTCCGGCGTCACCTGCGGTCCTGGCCACGGCATCAGCGTCGGTAGCCTGGGCAGGTACAAGGACGAGAAGGATGTGACGGATGTTACCGTCAAGAACTGCGTGCTCAAGAAGTCCACCAATGGCGTCCGGATCAAGTCCTATGAGGACGCCGCCTCGGTGCTCACCGCCTCCAAGTTTACCTACGAGAACATCAAGATGGAGGACGTTGCTAACCCCATCATCATCGACATGAAGTACTGCCCCAACAAGATCTGCACTGCCAACGGCAACTCCAAGGTCACCATCAAGGACATCACCTTCAAGAACATCACCGGCACCTCCTCCACGCCCGAGGCCGTTAGCCTCCTCTGCTCCGACAAGCTGCCGTGCACCGGCGTCACCTTGAATGACATCAAGGTCGAGTACTCTGGCACAAACAACAAGACCATGGCCGTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTCAAGGAGCTTTCGTGCTTCTAAACGATCAACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTATTTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCAGTCGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGTGGTACCGGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTAGGTGACATATACAATCCTCAAGAC]

[+] EMBL AK072748             [AGAGAGGAAGAAGGAGAGAAACATCTAGAGTGAATAAGAAAGATGGGGTTCGTCCGTGCCCTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCACGCGAAGGACTACCCCAAGGAGGAGGGCGCGAAGGCGGAGGGGCCGGCCGCCGCCTCGGGGGGCGGCGGCGG TAGCACCCACGACGTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAGACGGACAGCACCAAGGCGGTCAACGAGGCGTGGACGGCGGCGTGCGCTGGCACCGGCAAGCAGACGATCGTCGTCCCCAAGGGCGACTTCTTGACGGGTCCCCTCAACTTCACCGGGCCATGCAAGGGCGACATCGTCATCCAGCTCGACGGAAACCTGCTCGGCTCCACCGACCTCGCCTTATTCAAGTCGAACTGGATCGAGATCATGCGCCTCGAAAGCCTCGAAATCAGCGGCAAGGGCAAGCTCGACGGCCAGG GCGCCGCCGTCTGGAGCAAGAACTCCTGCGCCAAGAAATACGACTGCAAGATCCTCCCCAACACTTTGGTGCTGGACTTCGTGAACAACGGTCTCATCAGCGGCATCTCTCTGGTGAACCCCAAGTTCTTCCACATGAACGTGTTCAAGAGTAAGAACATCACCATCAAGGACGTGACCATCACCGCGCCGGGGGACAGCCCGAACACGGACGGCATCCACATGGGCGACTCCTCCAAGATCAGCATCATTGACACGGTCATCGGCACCGGCGATGATTGCATCTCCATCGGCCCCGGCACCGAGGGCGTCAACATCTCCGGCGTCACCTGCGGTCCTGGCCACGGCATCAGCGTCGGTAGCCTGGGCAGGTACAAGGACGAGAAGGATGTGACGGATGTTACCGTCAAGAACTGCGTGCTCAAGAAGTCCACCAATGGCGTCCGGATCAAGTCCTATGAGGACGCCGCCTCGGTGCTCACCGCCTCCAAGTTTACCTACGAGAACATCAAGATGGAGGACGTTGCTAACCCCATCATCATCGACATGAAGTACTGCCCCAACAAGATCTGCACTGCCAACGGCAACTCCAAGGTCACCATCAAGGACATCACCTTCAAGAACATCACCGGCACCTCCTCCACGCCCGAGGCCGTTAGCCTCCTCTGCTCCGACAAGCTGCCGTGCACCGGCGTCACCTTGAATGACATCAAGGTCGAGTACTCTGGCACAAACAACAAGACCATGGCCGTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTCAAGGAGCTTTCGTGCTTCTAAACGATCAACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTATTTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCAGTCGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGTGGTACCGGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTAGGTGACATATACAATCCTCAAGAC]
[+] EMBL C72981               [                   AACATCTAGAGTGAATAAGAAAGATGGGGTTCGTCCGTGCCCTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCACGCGAAGGACTACCCCAAGGAGGAGGGCGCGAAGGCGGAGGGGTCGGCCGCCGCCTCGGGGGGCGGC GCGGNTAGCACCCACGACGTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAGACGGACAGCACCAAGGCGGTCAACGAGGCGTGGACGGCGGCGTGCGCTGGCACCGGCAAGCAGACGATCGTCGTCCCCAAGGGCGACTTCTTGACGGGTCCCCTCAACTTCACCGGGCCATGCAAGGGCGACATCGTCATCCAGCTCGACGGAAACCTGCTCGGCT CACCGACCTCGCCTTATTCAAGTCG ACTGGATCGAGAT ATGCG CTCGAAAG CTCGAAATCAGCGGCAA GGCAA CTCGACGGCAAGGCGCGCg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C72992               [                      ATCTAGAGTGAATAAGAAAGATGGGGTTCGTCCGTGCCCTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCACGCGAAGGACTACCCCAAGGAGGAGGGCGCGAAGGCGGAGGGGGCGGCCGCCGCCTCGGGGGGCGGCGGCGG TAGCACCCACGACGTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAGACGGACAGCACCAAGGCGGTCAACGAGGCGTGGACGGCGGCGTGCGCTGGCACCGGCAAGCAGACGATCGTCGTCCCCAAGGGCGACTTCTTGACGGGTCCCCTCAACTTCACCGGGCCATGCAAGGGCGACATCGTCATCCAGCTCGACGGAAACCTGCTCGGCTCCACCGACCTCGCCTTATTCAAGTCGAACTGGATCGAGATCATGCGCCTCGAAAGCCTCGAAATCAGCGGCAAGGGCAAGCTCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU094117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGGACATCACCTTCAAGAACATCACCGGCACCTCCTCCACGCCCGAGGCCGTTAGCCTCCTCTGCTCCGACAAGCTGCCGTGCACCGGCGTCACCTTGAATGACATCAAGGTCGAGTACTCTGGCACAAACAACAAGACCATGGCCGTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTCAAGGAGCTTTCGTGCTTCTAAACGATCAACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTATTTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCAGTCGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGTGGTACCGGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTAGGTGACATATACAAaaa       ]
[+] EMBL AU101214             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCGTGCTTCTAAACGATCNACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTATTTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCAGTCGGACTATCCGACTGNTCTATAGTCAGATTNTCTGCAGTGGTACCGGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTNGGTGACAaaaaa            ]
[+] EMBL CA763940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTTTTCATTTCTATTTCTATTTTCCAGG CACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCTGTCGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGTGGTACCAGACTATCCAGTTAGTTCTAAGCTG TTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTAGGTGACAT                ]


>consensus_10434#0 AGAGAGGAAGAAGGAGAGAAACATCTAGAGTGAATAAGAAAGATGGGGTTCGTCCGTGCC CTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCACGCGAAGGACTACCCCAAGGAGGAG GGCGCGAAGGCGGAGGGGCCGGCCGCCGCCTCGGGGGGCGGCGGCGGTAGCACCCACGAC GTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAGACGGACAGCACCAAGGCGGTCAACGAG GCGTGGACGGCGGCGTGCGCTGGCACCGGCAAGCAGACGATCGTCGTCCCCAAGGGCGAC TTCTTGACGGGTCCCCTCAACTTCACCGGGCCATGCAAGGGCGACATCGTCATCCAGCTC GACGGAAACCTGCTCGGCTCCACCGACCTCGCCTTATTCAAGTCGAACTGGATCGAGATC ATGCGCCTCGAAAGCCTCGAAATCAGCGGCAAGGGCAAGCTCGACGGCCAGGGCGCCGCC GTCTGGAGCAAGAACTCCTGCGCCAAGAAATACGACTGCAAGATCCTCCCCAACACTTTG GTGCTGGACTTCGTGAACAACGGTCTCATCAGCGGCATCTCTCTGGTGAACCCCAAGTTC TTCCACATGAACGTGTTCAAGAGTAAGAACATCACCATCAAGGACGTGACCATCACCGCG CCGGGGGACAGCCCGAACACGGACGGCATCCACATGGGCGACTCCTCCAAGATCAGCATC ATTGACACGGTCATCGGCACCGGCGATGATTGCATCTCCATCGGCCCCGGCACCGAGGGC GTCAACATCTCCGGCGTCACCTGCGGTCCTGGCCACGGCATCAGCGTCGGTAGCCTGGGC AGGTACAAGGACGAGAAGGATGTGACGGATGTTACCGTCAAGAACTGCGTGCTCAAGAAG TCCACCAATGGCGTCCGGATCAAGTCCTATGAGGACGCCGCCTCGGTGCTCACCGCCTCC AAGTTTACCTACGAGAACATCAAGATGGAGGACGTTGCTAACCCCATCATCATCGACATG AAGTACTGCCCCAACAAGATCTGCACTGCCAACGGCAACTCCAAGGTCACCATCAAGGAC ATCACCTTCAAGAACATCACCGGCACCTCCTCCACGCCCGAGGCCGTTAGCCTCCTCTGC TCCGACAAGCTGCCGTGCACCGGCGTCACCTTGAATGACATCAAGGTCGAGTACTCTGGC ACAAACAACAAGACCATGGCCGTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTC AAGGAGCTTTCGTGCTTCTAAACGATCAACCCACGCTACATCCTGCCACCACCACCATTA TTTTTTCATTTCTATTTCTATTTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTG ATTGGATTGTTCTGATGCAGTCGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGT GGTACCGGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATA CCTATTCATCCCTCTAGGTGACATATACAATCCTCAAGAC



consensusID : consensus_10434#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1484
fasta sequence
                              [GAGAAGCACCGGCGGTCAATAATTAAAAAAAAAAGAAAAAAATGGCTTTCAGAAACCATGACGCTGCCATGGTCCTCTTCTTCTTCCTCCTCATGGTGACTACCTACGCCAACGCGCACGGACACAGCAAGAAGCCCGAGGAGATCACTCAGGGCGTTTACGGGGCGGCGGCGGCGGTGGCGGCCGGCCCCGGCGGCACGTTCGACATCACCAAGCTCGGCGCCGTCGGCAACGGCAGGGCGGACAGCACCGGCGCGGTGATGGCGGCGTGGAGGTCGGCGTGCGCCGGCGCCGGGAAGCAGACGATCCTGATCCCCAAGGGGGATTTCATGACGGGGGCGATGGAGCTCAGGGGCCCCTGCAATGGCGCCGTGACCATCCAGCTCGACGGCAACCTGCTGGGCTCCAACGACCTCAGCAAGTACCCGGGCAAGAAGATGCCCAACTGGGTCGAGGTCCGCCATGTCGACAACTTCGTCATCTCCGGCAAGGGCAAGCTCGACGGCCAGGGCCCCGGCGTCTGGAGCAAGAACTCCTGCGCCAAGAACTACAACTGCAAGCTCCTCCCCAACACGCTGGTGCTGAACACGGTGAACGACGGGGTGGTGAGCGGGATCACGCTGCTGAACGCCAAGTTCTTCCACATGAACATCTACCGGTGCAAGGACATAAAGATCAGCGGCGTGACCATCAACGCCCCGGGGGACAGCCCCAACACCGACGGCATCCACATGGGCGACTCCTCCAAGATCACCATCGCCGCCACCACCATCGGCACCGGCGACGACTGCATCTCCATCGGCCCCGGCACCGACGGCGTCAACATCACCGGCGTCACCTGCGGCCCCGGCCACGGCATCAGCATCGGCAGCCTCGGCCGGTACAAGGACGAGCGGGACGTCCGGGACGTCTCCGTCACCCGCTGCGTCCTCCGCAAGACCACCAATGGCCTCCGGATCAAGTCGTACGAGGACTCCGTGTCGCCGGTGACCGTGTCCAAGGTGTCCTACGACGGCGTCGTCATGGACCACGTCGACAACCCCATCATCATCGACCAGAAGTACTGCCCCAACAGCATCTGCACCAGCAAGGGCGACTCCAAGGTGTCCGTCAGGGACGTCACCTTCAGGAACATCACCGGGTCGTCCAACACGCCGGCGGTCGTCCAGCTGCTCTGCTCCGGCAAGCTGCCGTGCAGCGGCGTCGCGATGCAGGACGTCAGGGTGCTGTACGGCGGCAGCGACAAGAAGACCACGGCCGTCTGCGACCACGCGCTGGGGAAGTCCACCGGGTGCCTCAAGGAGCTCGCTTGCCTCTAATGGATTATTAATTCGATCATCATCGATCTCTTTGTGTGTGTTCATCGTGTTTAAGAGACAGATCGAGGTTTGGAGAGCATATGGATGTATCCGCGTGTGTTCCTTGATTTTGATCTTCCAAGTTAATGTCCATATCCTTTCTTTCTGTAAAATTAAGACCCAAAG]

[+] EMBL AK072708             [GAGAAGCACCGGCGGTCAATAATTAAAAAAAAAAGAAAAAAATGGCTTTCAGAAACCATGACGCTGCCATGGTCCTCTTCTTCTTCCTCCTCATGGTGACTACCTACGCCAACGCGCACGGACACAGCAAGAAGCCCGAGGAGATCACTCAGGGCGTTTACGGGGCGGCGGCGGCGGTGGCGGCCGGCCCCGGCGGCACGTTCGACATCACCAAGCTCGGCGCCGTCGGCAACGGCAGGGCGGACAGCACCGGCGCGGTGATGGCGGCGTGGAGGTCGGCGTGCGCCGGCGCCGGGAAGCAGACGATCCTGATCCCCAAGGGGGATTTCATGACGGGGGCGATGGAGCTCAGGGGCCCCTGCAATGGCGCCGTGACCATCCAGCTCGACGGCAACCTGCTGGGCTCCAACGACCTCAGCAAGTACCCGGGCAAGAAGATGCCCAACTGGGTCGAGGTCCGCCATGTCGACAACTTCGTCATCTCCGGCAAGGGCAAGCTCGACGGCCAGGGCCCCGGCGTCTGGAGCAAGAACTCCTGCGCCAAGAACTACAACTGCAAGCTCCTCCCCAACACGCTGGTGCTGAACACGGTGAACGACGGGGTGGTGAGCGGGATCACGCTGCTGAACGCCAAGTTCTTCCACATGAACATCTACCGGTGCAAGGACATAAAGATCAGCGGCGTGACCATCAACGCCCCGGGGGACAGCCCCAACACCGACGGCATCCACATGGGCGACTCCTCCAAGATCACCATCGCCGCCACCACCATCGGCACCGGCGACGACTGCATCTCCATCGGCCCCGGCACCGACGGCGTCAACATCACCGGCGTCACCTGCGGCCCCGGCCACGGCATCAGCATCGGCAGCCTCGGCCGGTACAAGGACGAGCGGGACGTCCGGGACGTCTCCGTCACCCGCTGCGTCCTCCGCAAGACCACCAATGGCCTCCGGATCAAGTCGTACGAGGACTCCGTGTCGCCGGTGACCGTGTCCAAGGTGTCCTACGACGGCGTCGTCATGGACCACGTCGACAACCCCATCATCATCGACCAGAAGTACTGCCCCAACAGCATCTGCACCAGCAAGGGCGACTCCAAGGTGTCCGTCAGGGACGTCACCTTCAGGAACATCACCGGGTCGTCCAACACGCCGGCGGTCGTCCAGCTGCTCTGCTCCGGCAAGCTGCCGTGCAGCGGCGTCGCGATGCAGGACGTCAGGGTGCTGTACGGCGGCAGCGACAAGAAGACCACGGCCGTCTGCGACCACGCGCTGGGGAAGTCCACCGGGTGCCTCAAGGAGCTCGCTTGCCTCTAATGGATTATTAATTCGATCATCATCGATCTCTTTGTGTGTGTTCATCGTGTTTAAGAGACAGATCGAGGTTTGGAGAGCATATGGATGTATCCGCGTGTGTTCCTTGATTTTGATCTTCCAAGTTAATGTCCATATCCTTTCTTTCTGTAAAATTAAGACCCAAAG]


>consensus_10434#1 GAGAAGCACCGGCGGTCAATAATTAAAAAAAAAAGAAAAAAATGGCTTTCAGAAACCATG ACGCTGCCATGGTCCTCTTCTTCTTCCTCCTCATGGTGACTACCTACGCCAACGCGCACG GACACAGCAAGAAGCCCGAGGAGATCACTCAGGGCGTTTACGGGGCGGCGGCGGCGGTGG CGGCCGGCCCCGGCGGCACGTTCGACATCACCAAGCTCGGCGCCGTCGGCAACGGCAGGG CGGACAGCACCGGCGCGGTGATGGCGGCGTGGAGGTCGGCGTGCGCCGGCGCCGGGAAGC AGACGATCCTGATCCCCAAGGGGGATTTCATGACGGGGGCGATGGAGCTCAGGGGCCCCT GCAATGGCGCCGTGACCATCCAGCTCGACGGCAACCTGCTGGGCTCCAACGACCTCAGCA AGTACCCGGGCAAGAAGATGCCCAACTGGGTCGAGGTCCGCCATGTCGACAACTTCGTCA TCTCCGGCAAGGGCAAGCTCGACGGCCAGGGCCCCGGCGTCTGGAGCAAGAACTCCTGCG CCAAGAACTACAACTGCAAGCTCCTCCCCAACACGCTGGTGCTGAACACGGTGAACGACG GGGTGGTGAGCGGGATCACGCTGCTGAACGCCAAGTTCTTCCACATGAACATCTACCGGT GCAAGGACATAAAGATCAGCGGCGTGACCATCAACGCCCCGGGGGACAGCCCCAACACCG ACGGCATCCACATGGGCGACTCCTCCAAGATCACCATCGCCGCCACCACCATCGGCACCG GCGACGACTGCATCTCCATCGGCCCCGGCACCGACGGCGTCAACATCACCGGCGTCACCT GCGGCCCCGGCCACGGCATCAGCATCGGCAGCCTCGGCCGGTACAAGGACGAGCGGGACG TCCGGGACGTCTCCGTCACCCGCTGCGTCCTCCGCAAGACCACCAATGGCCTCCGGATCA AGTCGTACGAGGACTCCGTGTCGCCGGTGACCGTGTCCAAGGTGTCCTACGACGGCGTCG TCATGGACCACGTCGACAACCCCATCATCATCGACCAGAAGTACTGCCCCAACAGCATCT GCACCAGCAAGGGCGACTCCAAGGTGTCCGTCAGGGACGTCACCTTCAGGAACATCACCG GGTCGTCCAACACGCCGGCGGTCGTCCAGCTGCTCTGCTCCGGCAAGCTGCCGTGCAGCG GCGTCGCGATGCAGGACGTCAGGGTGCTGTACGGCGGCAGCGACAAGAAGACCACGGCCG TCTGCGACCACGCGCTGGGGAAGTCCACCGGGTGCCTCAAGGAGCTCGCTTGCCTCTAAT GGATTATTAATTCGATCATCATCGATCTCTTTGTGTGTGTTCATCGTGTTTAAGAGACAG ATCGAGGTTTGGAGAGCATATGGATGTATCCGCGTGTGTTCCTTGATTTTGATCTTCCAA GTTAATGTCCATATCCTTTCTTTCTGTAAAATTAAGACCCAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10434#0      ------------------------AGAGAGGAAGAAGGAGAGAAACATCTAGAGTGAATA 36
consensus_10434#1      GAGAAGCACCGGCGGTCAATAATTAAAAAAAAAAGAAAAAAATGGCTTTCAGAAACCATG 60
                                               * * *  **  *  * *    * *  ***    ** 

consensus_10434#0      AGAAAGATGGGGTTCGTCCGTGCCCTGTTCCTGCTGGCGATGGTGTGCGTGGCGGCGCAC 96
consensus_10434#1      ACGCTGCCATGGTCC-TCTTCTTCTTCCTCCTCATGGTGACTACCTACGCCAACGCGCAC 119
                       *    *    *** * **     * *  ****  *** **     * **     ******

consensus_10434#0      GCGAAGGACTAC---CCCAAGGAGGAGGGCGCGAAGGCGGAGGGGCCGGCCGCCGCCTCG 153
consensus_10434#1      GGACACAGCAAGAAGCCCGAGGAGATCACTCAGGGCGTTTACGGGGCGGCGGCGGCGGTG 179
                       *   *   * *    *** *****        *   *   * *** **** ** **   *

consensus_10434#0      GGGGGCGGCGGCGGTAGCACCCACGACGTGGTGAAGCTGGGCGGCAAGGGCGACGGCAAG 213
consensus_10434#1      GCGGCCGGCCCCGGCGGCACGTTCGACATCACCAAGCTCGGCGCCGTCGGCAACGGCAGG 239
                       * ** ****  ***  ****   **** *    ***** **** *   *** ****** *

consensus_10434#0      ACGGACAGCACCAAGGCGGTCAACGAGGCGTGGACGGCGGCGTGCGCTGGCACCGGCAAG 273
consensus_10434#1      GCGGACAGCACCGGCGCGGTGATGGCGGCGTGGAGGTCGGCGTGCGCCGGCGCCGGGAAG 299
                        ***********   ***** *  * ******** * ********** *** **** ***

consensus_10434#0      CAGACGATCGTCGTCCCCAAGGGCGACTTCTTGACGGGTCCCCTCAACTTCACCGGGCCA 333
consensus_10434#1      CAGACGATCCTGATCCCCAAGGGGGATTTCATGACGGGGGCGATGGAGCTCAGGGGCCCC 359
                       ********* *  ********** ** *** *******  *  *  *  ***  ** ** 

consensus_10434#0      TGCAAGGGCGACATCGTCATCCAGCTCGACGGAAACCTGCTCGGCTCCACCGACCTCGCC 393
consensus_10434#1      TGCAATGGCGCCGTGACCATCCAGCTCGACGGCAACCTGCTGGGCTCCAACGACCTCAGC 419
                       ***** **** * *   *************** ******** ******* *******  *

consensus_10434#0      TTATTC------------AAGTCGAACTGGATCGAGATCATGCGCCTCGAAAGCCTCGAA 441
consensus_10434#1      AAGTACCCGGGCAAGAAGATGCCCAACTGGGTCGAGGTCCGCCATGTCGACAACTTCGTC 479
                          * *            * * * ****** ***** **   *   **** * * ***  

consensus_10434#0      ATCAGCGGCAAGGGCAAGCTCGACGGCCAGGGCGCCGCCGTCTGGAGCAAGAACTCCTGC 501
consensus_10434#1      ATCTCCGGCAAGGGCAAGCTCGACGGCCAGGGCCCCGGCGTCTGGAGCAAGAACTCCTGC 539
                       ***  **************************** *** **********************

consensus_10434#0      GCCAAGAAATACGACTGCAAGATCCTCCCCAACACTTTGGTGCTGGACTTCGTGAACAAC 561
consensus_10434#1      GCCAAGAACTACAACTGCAAGCTCCTCCCCAACACGCTGGTGCTGAACACGGTGAACGAC 599
                       ******** *** ******** *************  ******** **   ****** **

consensus_10434#0      GGTCTCATCAGCGGCATCTCTCTGGTGAACCCCAAGTTCTTCCACATGAACGTGTTCAAG 621
consensus_10434#1      GGGGTGGTGAGCGGGATCACGCTGCTGAACGCCAAGTTCTTCCACATGAACATCTACCGG 659
                       **  *  * ***** *** * *** ***** ******************** * * *  *

consensus_10434#0      AGTAAGAACATCACCATCAAGGACGTGACCATCACCGCGCCGGGGGACAGCCCGAACACG 681
consensus_10434#1      TGCAAGGACATAAAGATCAGCGGCGTGACCATCAACGCCCCGGGGGACAGCCCCAACACC 719
                        * *** **** *  ****  * *********** *** ************** ***** 

consensus_10434#0      GACGGCATCCACATGGGCGACTCCTCCAAGATCAGCATCATTGACACGGTCATCGGCACC 741
consensus_10434#1      GACGGCATCCACATGGGCGACTCCTCCAAGATCACCATCGCCGCCACCACCATCGGCACC 779
                       ********************************** ****   * ***   **********

consensus_10434#0      GGCGATGATTGCATCTCCATCGGCCCCGGCACCGAGGGCGTCAACATCTCCGGCGTCACC 801
consensus_10434#1      GGCGACGACTGCATCTCCATCGGCCCCGGCACCGACGGCGTCAACATCACCGGCGTCACC 839
                       ***** ** ************************** ************ ***********

consensus_10434#0      TGCGGTCCTGGCCACGGCATCAGCGTCGGTAGCCTGGGCAGGTACAAGGACGAGAAGGAT 861
consensus_10434#1      TGCGGCCCCGGCCACGGCATCAGCATCGGCAGCCTCGGCCGGTACAAGGACGAGCGGGAC 899
                       ***** ** *************** **** ***** *** **************  *** 

consensus_10434#0      GTGACGGATGTTACCGTCAAGAACTGCGTGCTCAAGAAGTCCACCAATGGCGTCCGGATC 921
consensus_10434#1      GTCCGGGACGTCTCCGTCACCCGCTGCGTCCTCCGCAAGACCACCAATGGCCTCCGGATC 959
                       **   *** **  ******    ****** ***   *** *********** ********

consensus_10434#0      AAGTCCTATGAGGACGCCGCCTCGGTGCTCACCGCCTCCAAGTTTACCTACGAGAACATC 981
consensus_10434#1      AAGTCGTACGAGGACTCCGTGTCGCCGGTGACCGTGTCCAAGGTGTCCTACGACGGCGTC 1019
                       ***** ** ****** ***  ***  * * ****  ****** *  *******   * **

consensus_10434#0      AAGATGGAGGACGTTGCTAACCCCATCATCATCGACATGAAGTACTGCCCCAACAAGATC 1041
consensus_10434#1      GTCATGGACCACGTCGACAACCCCATCATCATCGACCAGAAGTACTGCCCCAACAGCATC 1079
                          *****  **** *  ******************  *****************  ***

consensus_10434#0      TGCACTGCCAACGGCAACTCCAAGGTCACCATCAAGGACATCACCTTCAAGAACATCACC 1101
consensus_10434#1      TGCACCAGCAAGGGCGACTCCAAGGTGTCCGTCAGGGACGTCACCTTCAGGAACATCACC 1139
                       *****   *** *** **********  ** *** **** ********* **********

consensus_10434#0      GGCACCTCCTCCACGCCCGAGGCCGTTAGCCTCCTCTGCTCCGACAAGCTGCCGTGCACC 1161
consensus_10434#1      GGGTCGTCCAACACGCCGGCGGTCGTCCAGCTGCTCTGCTCCGGCAAGCTGCCGTGCAGC 1199
                       **  * ***  ****** * ** ***    ** ********** ************** *

consensus_10434#0      GGCGTCACCTTGAATGACATCAAGGTCGAGTACTCTGGCACAAACAACAAGACCATGGCC 1221
consensus_10434#1      GGCGTCGCGATGCAGGACGTCAGGGTGCTGTACGGCGGCAGCGACAAGAAGACCACGGCC 1259
                       ****** *  ** * *** *** ***   ****   ****   **** ******* ****

consensus_10434#0      GTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTCAAGGAGCTTTCGTGCTTCTAA 1281
consensus_10434#1      GTCTGCGACCACGCGCTGGGGAAGTCCACCGGGTGCCTCAAGGAGCTCGCTTGCCTCTAA 1319
                       ****** *  * **   *** *   ******* **************  * *** *****

consensus_10434#0      ACGATCAACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTAT 1341
consensus_10434#1      TGGATTA--------TTAATTCGATCATCATCG-----ATCTCTTTGTGTGTGTTCATCG 1366
                         *** *        *  ** *   ** ** *      ** * **  * * * **  *  

consensus_10434#0      TTTCCAGGTCACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCAGT 1401
consensus_10434#1      TGTTTAAGAGACAGATCGAGGTT---TGGAGAGCATATGGATG---TATCCGCGTGTGTT 1420
                       * *  * *  **  ** *   **   *** **   * **  **   * * *   **   *

consensus_10434#0      CGGACTATCCGACTGCTCTATAGTCAGATTGTCTGCAGTGGTACCGGACTATCCAGTTA- 1460
consensus_10434#1      CCTTGATTTTGAT--CTTCCAAGTTAA--TGTCCATA-TCCTTTCTTTCTGTAAAATTAA 1475
                       *      *  **   **    *** *   ****   * *  *  *   ** *  * *** 

consensus_10434#0      GTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATCCCTCTAGGTG 1520
consensus_10434#1      GACCCAAAG--------------------------------------------------- 1484
                       *  * **                                                     

consensus_10434#0      ACATATACAATCCTCAAGAC 1540
consensus_10434#1      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)