cluster # 10435

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Oryza sativa
cluster # 10435 cluster # 10435 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10435#0 length = 794 sequences # 6

consensus_10435#1 length = 260 sequences # 1

consensusID : consensus_10435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 794
fasta sequence

                              [TCTCCTTGTCTCTGCTCTCC-CACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGATC-GCGGCGCGTCCTCCATCGGCGACGGCACCGTCAGCTACGGCATGGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACTCAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCCCGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGACACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCACCGTATAGACTCCTATGATTTATGCATGTG]

[+] EMBL CF302179             [TCTCCTTGTCTCTGCTCTCC CACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGATCGGCGGCGCGTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK066799             [ CTCCTTGTCTCTGCTCTCCACACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGAGC GTGGCGAGAAGGGCATCGGCGACGGCACCGTCAGCTACGGCATGGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACTCAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCCCGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGACACCGGGCTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCACCGTATAGACTCCTATGATTTATGCATGTG]
[-] EMBL CF294960             [                                                                                                                                                                                                                                                                                   GATCAACATGCCCTGCGTCAACCCTGACACCGGACTGGTTGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGTTGGTTCAGCCTCCAGAAGGGACCTTTTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTTGTAACTATCACCTGCCCCCAAATTTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGGAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCCCCGTAaaaaaaaaa                ]
[+] EMBL D42592               [                                                                                                                                                                                                                                                                                               CTGCGTCAACCCTGACACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATNGCCGC NCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCNCCCAAATCTGTCACCTGAAA GTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATC                                                                                                                                                        ]
[+] EMBL AK058755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCC                                         ]
[-] EMBL CB966582             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGA                                                             ]




>consensus_10435#0
TCTCCTTGTCTCTGCTCTCCCACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAAT
CGGCGGCCATGACGATCGCGGCGCGTCCTCCATCGGCGACGGCACCGTCAGCTACGGCAT
GGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACT
CAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCC
CGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGA
CACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACAC
CATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCT
GGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTT
CCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATG
GCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTAC
TAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAAT
GGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGA
ACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCACCGTATAGACTCCTAT
GATTTATGCATGTG

consensusID : consensus_10435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [GACTGCTATTTCTGTCCACGGCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTACTAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA]

[-] EMBL CF296465             [GACTGCTATTTCTGTCCACGGCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTACTAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA]




>consensus_10435#1
GACTGCTATTTCTGTCCACGGCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGT
CCCCTGAAAGGTAGTAGTACTAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAA
TCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGG
ACAGGTTTGGCTTGGTTTGAACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTAT
TGTGGCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10435#0      TCTCCTTGTCTCTGCTCTCCCACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAAT 60
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CGGCGGCCATGACGATCGCGGCGCGTCCTCCATCGGCGACGGCACCGTCAGCTACGGCAT 120
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      GGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACT 180
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCC 240
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGA 300
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACAC 360
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCT 420
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      GGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTT 480
consensus_10435#1      ------------------------------------------------------------
                                                                                   

consensus_10435#0      CCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATG 540
consensus_10435#1      ----------------------------------------GACTGCTATTTCTGTCCACG 20
                                                               ** ****** ******** *

consensus_10435#0      GCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTAC 600
consensus_10435#1      GCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTAC 80
                       ************ **************************** ******************

consensus_10435#0      TAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAAT 660
consensus_10435#1      TAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAAT 140
                       ** *********************************************************

consensus_10435#0      GGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGA 720
consensus_10435#1      GGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGA 200
                       ************************************************************

consensus_10435#0      ACGCTGAGA--GAGATTGAATAACACGAGACCTCCTGTATC-TGGCACCGTATAGACTCC 777
consensus_10435#1      ACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA 260
                       *********     **  **** ****** **********  *****    * * *    

consensus_10435#0      TATGATTTATGCATGTG 794
consensus_10435#1      -----------------