cluster # 10436

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Oryza sativa
cluster # 10436 cluster # 10436 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10436#0 length = 900 sequences # 2

consensus_10436#1 length = 684 sequences # 3
consensus_10436#2 length = 417 sequences # 2

consensusID : consensus_10436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 900
fasta sequence

                              [AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT]

[+] EMBL AK108434             [AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT]
[+] EMBL CA882872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTA              ]




>consensus_10436#0
AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAG
TTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCG
TTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTG
TAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTG
CATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT
CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG
TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT
ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTAT
TGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGC
TTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGA
GTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGA
AGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTA
GTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA
TTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGA
ATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT

consensusID : consensus_10436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 684
fasta sequence

                              [AGTCAGCTGTAATGCTCATAAATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTTTTATTTATTACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA-TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAAGTTGAATGAAAAAAAAAAAAAAA]

[+] EMBL CF330262             [AGTCAGCTGTAATGCTCATAAATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTTTTATTTATTACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTG                                                                                                                                                                                                                           ]
[-] EMBL CF330261             [                                                                     ACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAA                       ]
[+] EMBL C99387               [                                                                                                                                                                                                                                                                                                                                            TGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCNTCTGTCGGAAATCGTGCAGACATTCANCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACNAAACTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGAAAAAAAAAAAAAAA]




>consensus_10436#1
AGTCAGCTGTAATGCTCATAAATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTT
TTATTTATTACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCT
TCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCT
GTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACA
GCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTT
CAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCT
ATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTAT
GTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAA
CTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTA
TGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTA
CTTGATATTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAA
AGTTGAATGAAAAAAAAAAAAAAA

consensusID : consensus_10436#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence

                              [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT]

[+] EMBL AU173126             [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT]
[+] EMBL AU164647             [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTT                                         ]




>consensus_10436#2
CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTG
CAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTAC
ACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGA
CAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCC
TTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGC
TGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCAC
AGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10436#0      AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAG 60
consensus_10436#2      -------------------------------------------------CGGACTATCCC 11
consensus_10436#1      ------------------------------------------------------------
                                                                                   

consensus_10436#0      TTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCG 120
consensus_10436#2      TCAAGTCTCAGG--ATTTAACTGCGT-TGTTTCTAGCTGTTAGACTATACTGCAGCTTCG 68
consensus_10436#1      ------------------------------------------------------------
                                                                                   

consensus_10436#0      TTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTG 180
consensus_10436#2      TTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTG 128
consensus_10436#1      ------------------------------------------AGTCAGCTGTAATGCTCA 18
                                                                    *****  * *  *  

consensus_10436#0      TAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTG 240
consensus_10436#2      TAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTG 188
consensus_10436#1      TAA-----ATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTT-----TTATTTAT 68
                       ***     **      *** **** **  *  ******  ***           ****  

consensus_10436#0      CATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 300
consensus_10436#2      CATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 248
consensus_10436#1      TACTTTTTTG-AAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 127
                        * * *  *    ***********************************************

consensus_10436#0      CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 360
consensus_10436#2      CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 308
consensus_10436#1      CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 187
                       ************************************************************

consensus_10436#0      TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 420
consensus_10436#2      TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 368
consensus_10436#1      TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 247
                       ************************************************************

consensus_10436#0      ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTAT 480
consensus_10436#2      ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT----------- 417
consensus_10436#1      ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTAT 307
                       *************************************************           

consensus_10436#0      TGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGC 540
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      TGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGC 367
                                                                                   

consensus_10436#0      TTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGA 600
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      TTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGA 427
                                                                                   

consensus_10436#0      GTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGA 660
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      GTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGA 487
                                                                                   

consensus_10436#0      AGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTA 720
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      AGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTA 547
                                                                                   

consensus_10436#0      GTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA 780
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      GTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA 607
                                                                                   

consensus_10436#0      TTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGA 840
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAAGTTGAA 667
                                                                                   

consensus_10436#0      ATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT 900
consensus_10436#2      ------------------------------------------------------------
consensus_10436#1      TGAAAAAAAAAAAAAAA------------------------------------------- 684