|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1202 fasta sequence
[CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAGAGAGAGAAAGAGCTTGCGTCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACAATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCGAAGCCATC-GTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACGACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACTGCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACGGCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCAAGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGGGCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCATCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGGCCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGTGGCGGCAGGGGCAGGGAGGAGATCACGCGGATGAGGATCAGGCGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGACGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCAGCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACGTCATCGGCCTCTGAATTGAATCTCTCTCTCTCTCTCTTAGCTAATTACTATTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATGATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAATTCCAGCACTTGCGCATTGTTGA]
[+] EMBL AK070356 [CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAGAGAGAGAAAGAGCTTGCGTCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACAATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCGAAGCCATC GTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACGACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACTGCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACGGCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCAAGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGGGCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCATCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGGCCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGTGGCGGCAGGGGCAGGGAGGAGATCACGCGGATGAGGATCAGGCGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGACGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCAGCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACGTCATCGGCCTCTGAATTGAATCTCTCTCTCTCTCTCTTAGCTAATTACTATTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATGATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAATTCCAGCACTTGCGCATTGTTGA]
[+] EMBL OSC135 [ CTTGCGTCGCAATNACCGCCGTCGACTTGATNCCTGCAGCTGACNACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACNACCACCAGCTCCCNNCCGCCGCCGACAACGCCATACTACACAATACCANGCGGCTGGAGGGGAAGGTNGCCATCGTCACCNGCNGCTCGCGTNGCATCGGCGAA NATCNGTAAGGGCCTTCGTTCACNACGGCGCTNTCGTCGTCGTCGCCGACATCGACGACGCCGGGG ]
consensusID : consensus_10438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1189 fasta sequence
[TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG-AGGCGCTGGC-GGCGGCGCT--GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGG-AGGAGGACGTGGAGCGCGCCGTCG-AGCGCGCCGTGGCGCGGT-ACGGGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCAAGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGGGCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCATCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCGCCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100767 [TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG AGGCGCTGGC GGCGGCGCT GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGG AGGAGGACGTGGAGCGCGCCGTCG AGCGCGCCGTGGCGCGGT ACGGGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCAAGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGGGCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCATCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCGCCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATT ]
[+] EMBL C72142 [ ACAGGGTCGTACATNCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCNGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACNNCGCGGCGGGCGAAGGTGCTTGCNTGCGGCGCTTGGGGGCTGTACnttc ]
[+] EMBL C72715 [ CCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCNACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG AGGCGCTGGC GGCGGCGCT GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGGAAGGAGGACGTGGAGCGCGCCGTCGAAGCGCCCCGTTGCG GTTAACGG ]
[+] EMBL AU094051 [ AATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10438#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172460 [CGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10438#1 ------------TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCT 48
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAG-AGAGAGAAAGAGCTTGCG 59
consensus_10438#1 ACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACC 108
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 TCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCAT 119
consensus_10438#1 AGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCA 168
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 CCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACA 179
consensus_10438#1 TGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGG 228
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 ATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCG 239
consensus_10438#1 AGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACG 288
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 AAGCCATCGTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACG 299
consensus_10438#1 ACGCGGCGGGCGAGGCGCTGGCGGCGGCGCTGGGGCCGCACGTCGGG---TTCGTGCGGT 345
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 ACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACT 359
consensus_10438#1 GCGACGTGTCGGTGGAGGAGGACGTGGAGCGCGCCGTCGAGCGCGCCGTGGCGCGGTACG 405
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 GCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACG 419
consensus_10438#1 GGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCA 465
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 GCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCA 479
consensus_10438#1 AGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGG 525
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 AGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGG 539
consensus_10438#1 GCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCA 585
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 GCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCA 599
consensus_10438#1 TCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCG 645
consensus_10438#2 ------------------------------------------------------------
consensus_10438#0 TCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGG 659
consensus_10438#1 CCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACG 705
consensus_10438#2 -------------------------------------------------CGGCGCCCACG 11
consensus_10438#0 CCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACG 719
*** * ****
consensus_10438#1 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCT 765
consensus_10438#2 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCT 71
consensus_10438#0 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGT 779
********************************** ** ** ******** * ***** *
consensus_10438#1 GGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACA 825
consensus_10438#2 GGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACA 131
consensus_10438#0 GGCGGCAGGGGCAGG--------------GAGGAGATC-ACGCGGATGAGGATC---AGG 821
**** ***** ** * ** ** * **** ** ** * *
consensus_10438#1 TCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCA 885
consensus_10438#2 TCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCA 191
consensus_10438#0 CGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGA 881
** * * * ** ************* ********* **** ** * ** ** *
consensus_10438#1 CGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCA 945
consensus_10438#2 CGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCA 251
consensus_10438#0 CGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCA 941
********** ******** * * * ******** ********* * ***** ****
consensus_10438#1 GCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 1005
consensus_10438#2 GCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 311
consensus_10438#0 GCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 1001
******* ***** *** * ****************************************
consensus_10438#1 CCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGA 1065
consensus_10438#2 CCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGA 371
consensus_10438#0 CCAGAAACGTCATCGGCCTCTGAAT-TGAATCTCTCTCTCTCTCTCTTAGCTAATTACTA 1060
******** * ** ***** *** * * **** **** * * * ** ** *
consensus_10438#1 ACACAACTAAAAAGG-ATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCA 1124
consensus_10438#2 ACACAACTAAAAAGG-ATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAA 430
consensus_10438#0 TTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATG 1120
** ** * * ** * * ** * ** * ** ****
consensus_10438#1 TTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAA 1184
consensus_10438#2 AAAAAAAAA--------------------------------------------------- 439
consensus_10438#0 ATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAAT 1180
*
consensus_10438#1 AAAAA----------------- 1189
consensus_10438#2 ----------------------
consensus_10438#0 TCCAGCACTTGCGCATTGTTGA 1202
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||