These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1202 fasta sequence [CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAGAGAGAGAAAGAGCTTGCGTCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACAATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCGAAGCCATC-GTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACGACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACTGCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACGGCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCAAGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGGGCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCATCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGGCCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGTGGCGGCAGGGGCAGGGAGGAGATCACGCGGATGAGGATCAGGCGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGACGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCAGCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACGTCATCGGCCTCTGAATTGAATCTCTCTCTCTCTCTCTTAGCTAATTACTATTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATGATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAATTCCAGCACTTGCGCATTGTTGA] [+] EMBL AK070356 [CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAGAGAGAGAAAGAGCTTGCGTCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACAATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCGAAGCCATC GTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACGACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACTGCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACGGCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCAAGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGGGCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCATCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGGCCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGTGGCGGCAGGGGCAGGGAGGAGATCACGCGGATGAGGATCAGGCGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGACGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCAGCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACGTCATCGGCCTCTGAATTGAATCTCTCTCTCTCTCTCTTAGCTAATTACTATTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATGATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAATTCCAGCACTTGCGCATTGTTGA] [+] EMBL OSC135 [ CTTGCGTCGCAATNACCGCCGTCGACTTGATNCCTGCAGCTGACNACGACAACAACAAGCAGTCATCCACCGGCCTCCTCCACNACCACCAGCTCCCNNCCGCCGCCGACAACGCCATACTACACAATACCANGCGGCTGGAGGGGAAGGTNGCCATCGTCACCNGCNGCTCGCGTNGCATCGGCGAA NATCNGTAAGGGCCTTCGTTCACNACGGCGCTNTCGTCGTCGTCGCCGACATCGACGACGCCGGGG ] consensusID : consensus_10438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1189 fasta sequence [TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG-AGGCGCTGGC-GGCGGCGCT--GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGG-AGGAGGACGTGGAGCGCGCCGTCG-AGCGCGCCGTGGCGCGGT-ACGGGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCAAGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGGGCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCATCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCGCCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100767 [TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG AGGCGCTGGC GGCGGCGCT GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGG AGGAGGACGTGGAGCGCGCCGTCG AGCGCGCCGTGGCGCGGT ACGGGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCAAGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGGGCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCATCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCGCCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATT ] [+] EMBL C72142 [ ACAGGGTCGTACATNCACACTACCCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCNGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACNNCGCGGCGGGCGAAGGTGCTTGCNTGCGGCGCTTGGGGGCTGTACnttc ] [+] EMBL C72715 [ CCTCGCCTCCTACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCNACCTCCTCCCTGACAAGGCGCACCAGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCATGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGGAGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACGACGCGGCGGGCG AGGCGCTGGC GGCGGCGCT GGGGCCGCACGTCGGGTTCGTGCGGTGCGACGTGTCGGTGGAAGGAGGACGTGGAGCGCGCCGTCGAAGCGCCCCGTTGCG GTTAACGG ] [+] EMBL AU094051 [ AATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCATTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10438#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172460 [CGGCGCCCACGGCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCTGGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACATCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCACGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCAGCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCTCCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGAACACAACTAAAAAGGATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10438#1 ------------TATCACTTGCTAGGACAGGGTCGTACATGCACACTACCCTCGCCTCCT 48 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 CCTTGCCTTGCTTGCCTCTCATCAGACGATTGATCGACAAG-AGAGAGAAAGAGCTTGCG 59 consensus_10438#1 ACGCCCAGGATCTCGCCATGCCTGCCGCCGCACTCGACCTCCTCCCTGACAAGGCGCACC 108 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 TCGCAATGACCGCCGTCGACTTGATGCCTGCAGCTGACGACGACAACAACAAGCAGTCAT 119 consensus_10438#1 AGCCGTCCATGGCGCCGTCGCTCCACGCCTGGGACTCCCCCAATGGCGCCCCCACTCCCA 168 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 CCACCGGCCTCCTCCACCACCACCAGCTCCCCGCCGCCGCCGACAACGCCATACTACACA 179 consensus_10438#1 TGCCCAAGAGGCTGGAAGGGAAGGTGGCCATTGTCACCGGCGGGGCGAGGGGGATCGGGG 228 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 ATACCAGGCGGCTGGAGGGGAAGGTGGCCATCGTCACCGGCGGCTCGCGTGGCATCGGCG 239 consensus_10438#1 AGGCGATCGTGAGGCTGTTCGTGAAGCACGGGGCCAAGGTGGTGATCGCGGACATCGACG 288 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 AAGCCATCGTAAGGGCCTTCGTTCACCACGGCGCTCTCGTCGTCGTCGCCGACATCGACG 299 consensus_10438#1 ACGCGGCGGGCGAGGCGCTGGCGGCGGCGCTGGGGCCGCACGTCGGG---TTCGTGCGGT 345 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 ACGCCGGGGGCCACGCGCTGGCCGCCGCGCTCGGCCCGCACGCCTGCACCTACGTCCACT 359 consensus_10438#1 GCGACGTGTCGGTGGAGGAGGACGTGGAGCGCGCCGTCGAGCGCGCCGTGGCGCGGTACG 405 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 GCGACGTGGCCGAGGAGGCCGACGTGGAACGCGCCGTCGCCACCACGCTGGAGCAGCACG 419 consensus_10438#1 GGCGGTTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGCCGCCA 465 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 GCCGCCTGGACGTGCTGTGCAACAACGCCGGGGTGCTGGGCCGCCAGACGCGCGGCGCCA 479 consensus_10438#1 AGAGCATCCTGTCGTTCGACGCCGGGGAGTTCGACCGCGTGCTCCGCGTCAACGCGCTGG 525 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 AGAGCATCGCGTCCCTCGACGCCGCCGAGTTCGCCCGCGTGCTGCGCGTCAACGCGCTGG 539 consensus_10438#1 GCGCCGCGCTCGGCATGAAGCACGCGGCGCTCGCCATGACCCAGCGCCGCGCCGGCAGCA 585 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 GCGCCGCCCTCGGAATGAAGCACGCGGCGCGTGCCATGGTGCCCCGCCGCTCCGGGAGCA 599 consensus_10438#1 TCATCTCCGTCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCG 645 consensus_10438#2 ------------------------------------------------------------ consensus_10438#0 TCGTGTCGGTGGCGAGCGTGGCGGGCGTGCTGGGCGGCCTCGGCCCGCACGCGTACACGG 659 consensus_10438#1 CCTCCAAGCACGCCATCGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCCCACG 705 consensus_10438#2 -------------------------------------------------CGGCGCCCACG 11 consensus_10438#0 CCTCCAAGCACGCCCTAGTGGGGCTCACCAAGAACGCCGCCTGCGAGCTCGGGGAGCACG 719 *** * **** consensus_10438#1 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCT 765 consensus_10438#2 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTCGCCACCCCGATGCTCATCAACGCCT 71 consensus_10438#0 GCATCCGCGTCAACTGCATCTCCCCCTTCGGCGTGGCGACGCCGATGCTGGTGAACGCGT 779 ********************************** ** ** ******** * ***** * consensus_10438#1 GGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACA 825 consensus_10438#2 GGCGCCAGGGCCACGACGCCTCCACCGCCGACGACGCCGACGCCGACATCGACCTCGACA 131 consensus_10438#0 GGCGGCAGGGGCAGG--------------GAGGAGATC-ACGCGGATGAGGATC---AGG 821 **** ***** ** * ** ** * **** ** ** * * consensus_10438#1 TCGCCGTGCCCAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTCAGGGGCCTCGCCA 885 consensus_10438#2 TCGCCGTGCCCAGCGACCAGGAGGTGGAGAANATGGAGGAGGTGGTCAGGGGCCTCGCCA 191 consensus_10438#0 CGGCGGCGAGCGAGGAGGAGGAGGTGGAGAAGATGGAGGAGATGGTGCGGAGGCTGGCGA 881 ** * * * ** ************* ********* **** ** * ** ** * consensus_10438#1 CGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTCTTCCTCGCCA 945 consensus_10438#2 CGCTCAAGGGCGCGACGCTGAGACCCAGGGACATCGCCGAGGCGGCGCTNTTCCTCGCCA 251 consensus_10438#0 CGCTCAAGGGGCCGACGCTGCGGGCAGGCGACATCGCGGAGGCGGCGGTGTTCCTGGCCA 941 ********** ******** * * * ******** ********* * ***** **** consensus_10438#1 GCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 1005 consensus_10438#2 GCGACGACTCCAGATACATTTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 311 consensus_10438#0 GCGACGAGTCCAGGTACGTGTCCGGCCACAACCTCGTCGTCGACGGCGGCGTCACCACCT 1001 ******* ***** *** * **************************************** consensus_10438#1 CCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGA 1065 consensus_10438#2 CCAGAAACCTAATTGGCCTTTGACTCTTCTTCTCCCTCTAGATGAATGCGATAGTTTAGA 371 consensus_10438#0 CCAGAAACGTCATCGGCCTCTGAAT-TGAATCTCTCTCTCTCTCTCTTAGCTAATTACTA 1060 ******** * ** ***** *** * * **** **** * * * ** ** * consensus_10438#1 ACACAACTAAAAAGG-ATTTGTTAATGTGACGCAACGCAAGTGTACTCAGCTTCATCCCA 1124 consensus_10438#2 ACACAACTAAAAAGG-ATTTGTTAATGTGACGCAACGCAAGTGTACTCAAAAAAAAAAAA 430 consensus_10438#0 TTTCAGTTATATATATATATATATATATATAAGTCCGTGACCGTCCTCATCGATCATATG 1120 ** ** * * ** * * ** * ** * ** **** consensus_10438#1 TTTTGTTAATCTCTTGATTCAATGTGTTAATTGGANTTGTGCAAAAAAAAAAAAAAAAAA 1184 consensus_10438#2 AAAAAAAAA--------------------------------------------------- 439 consensus_10438#0 ATGATCGATGGATGTACTCCCGCATGCTCGACTGTGCTGTCTGAAATCTGATGACTGAAT 1180 * consensus_10438#1 AAAAA----------------- 1189 consensus_10438#2 ---------------------- consensus_10438#0 TCCAGCACTTGCGCATTGTTGA 1202 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||