These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1204 fasta sequence [CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTGCCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGCCTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCTCTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGTCGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGGGCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCA-GCAGGAGGTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG-ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA-CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATTTGTAAAAAA] [+] EMBL AK066877 [CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTGCCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGCCTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCTCTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGTCGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGGGCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCA GCAGGAGGTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTT ] [+] EMBL BI807687 [ GGGGCAAGAAGA CC GGAAGGGA GCATCT GTAAGGGGAA CACGCAGGA GTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGTAAC GCGGCAATCAGGGGAC CCGAT GCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGTACGGCGCACAAGTGGGTATTTTTCTGATCAAACG TGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTT CCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGAC TTTTTTTAAAAAAAAAAC AGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACCGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAaaaaaaaa ] [-] EMBL CB627645 [ AGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTT AAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATTTGTAAAAAA] [+] EMBL CB627644 [ ATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTT AAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTTATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCACTACAAATACTTACACTTTTGATTTTGGAT ] consensusID : consensus_10444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence [AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAAGCGGCGGCAATCAGGGGAC-CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGA-TCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACC--TTTT-TTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA] [+] EMBL AU093939 [AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAAGCGGCGGCAATCAGGGGAC CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGA TCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACC TTTT TTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA] [+] EMBL BI804918 [ AAGAAGAAGATTGGGA GTTCCTGTCGAGGCTC TCGGACCGGAGAAGCGGC GC ATCAGGGGACGCCGAT GCGGCGATCTCTTCCATTCC AGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGAGTC AACGTTGCCGCC CCGCATGCCAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTGTTTTGTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTAAAAAAAAAAACCAGAAGAATTTTGGGATCCTGTATGTATACGA CAGAAGTTTATAATTATTAACCTGTC ATGATTTGTACTTGACCACACCGGGGGATTGC AATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTAAAAAAAAAA] consensusID : consensus_10444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCNGGTGGTGCAAGCGGGCAACCNGGAGCACCTGCTTGTCCAAGGGCGTGTGCCCNTACTGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGGGCTTCCTTCTCNGCC] [+] EMBL C72290 [CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCNGGTGGTGCAAGCGGGCAACCNGGAGCACCTGCTTGTCCAAGGGCGTGTGCCCNTACTGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGGGCTTCCTTCTCNGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10444#0 CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCC 60 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 ACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGA 120 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGA 180 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTG 240 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 CCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGC 300 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 CTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCT 360 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 CTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGT 420 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 CGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGG 480 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCAGCAGGAGGTGAAGAGGAA 540 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAA 600 consensus_10444#1 -----------AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAA 49 consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGA 660 consensus_10444#1 GCGGCGGCAATCAGGGGAC-CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGA 108 consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 GAAGACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACT 720 consensus_10444#1 GAAGACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACT 168 consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 ATGGATCGTAAATTCCATGCT-TGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTT 779 consensus_10444#1 ATGGATCGTAAATTCCATGCT-TGGTTGTTATTCTTGCCTACCTTTTTTTT-AAAATTTT 226 consensus_10444#2 --------------CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGC 46 * **** * * * * **** * * * * * consensus_10444#0 TAGGGGGCTTTCACT--CTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTT 837 consensus_10444#1 TAGGGGGCTTTCACT--CTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTT 284 consensus_10444#2 TCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGT 106 * * *** *** * * * ** ** * * * * * consensus_10444#0 TTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAA 897 consensus_10444#1 TTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAA 344 consensus_10444#2 CTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACG-----GAGGAAGAGCGATCGA 161 * *** * * ** * * * * * ** * * *** * ** * consensus_10444#0 TTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTT--ACTC 955 consensus_10444#1 TTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTT--ACTC 402 consensus_10444#2 TCGAGCAGCGGAGAAAGCTTCG--CCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCN 219 * * * * ** * ** * * * **** * * ** * * * * ** consensus_10444#0 TGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTAC 1015 consensus_10444#1 TGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTAC 462 consensus_10444#2 GGTGGTGCAAGCGGGCAACCNGG----AGCACCTGCTTGTCCAAGGGCGTGTGCCCNTAC 275 ** ** ** * ** ** * * ** ** * * *** consensus_10444#0 AGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAG 1075 consensus_10444#1 AGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA------- 515 consensus_10444#2 TGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGG 335 * ** * * * ** * *** ***** * * consensus_10444#0 TTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCT 1135 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 GCTTCCTTCTCNGCC--------------------------------------------- 350 consensus_10444#0 CGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATT 1195 consensus_10444#1 ------------------------------------------------------------ consensus_10444#2 ------------------------------------------------------------ consensus_10444#0 TGTAAAAAA 1204 consensus_10444#1 --------- consensus_10444#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||