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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1964 fasta sequence
[TCCAGACTATCTTGACATATGTCCGTAGCCCAGCTCTCTCCTCGCTTATCTCTGATCCTTCTCCTACCTGCTGCCCCCAGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCATGAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTTGGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAAGGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAATATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAAAACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTACCTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTTATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTTTCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGATGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGACAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCATTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACTACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCAATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAATGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACCCAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAAGGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGACCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCTCCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTAGGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTGCAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCTAATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATAGGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGAAAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAAACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAGGTATCTAGCTTT]
[+] EMBL AK069918 [TCCAGACTATCTTGACATATGTCCGTAGCCCAGCTCTCTCCTCGCTTATCTCTGATCCTTCTCCTACCTGCTGCCCCCAGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCATGAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTTGGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAAGGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAATATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAAAACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTACCTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTTATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTTTCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGATGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGACAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCATTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACTACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCAATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAATGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACCCAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAAGGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGACCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCTCCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTAGGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTGCAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCTAATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATAGGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGAAAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAAACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAGGTATCTAGCTTT]
consensusID : consensus_1045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAATCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAGTATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAAAAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGCATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCATCATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTAAAAAGAAAGA]
[-] EMBL CB683251 [CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAATCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAGTATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAAAAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGCATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCATCATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTAAAAAGAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1045#0 ------------------------------------------------------------
consensus_1045#1 CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAA 60
consensus_1045#0 ------------------------------------------------------------
consensus_1045#1 TCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAG 120
consensus_1045#0 ------------------------------------------------------------
consensus_1045#1 TATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAA 180
consensus_1045#0 ------------------------------------------------------------
consensus_1045#1 AAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGC 240
consensus_1045#0 ------------TCCAGACTAT--CTTGAC--ATATGTCCGTAGCCCAGCTCTC-----T 39
consensus_1045#1 ATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCAT 300
* ***** * ** ** * * * * * **** * *
consensus_1045#0 CCTCGCTTATCT--CTGATCCTTCTCCTAC--CTGCTGCCCCCA---GGTAATGTGTCTG 92
consensus_1045#1 CATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTG 360
* * * * ** ** ** * ** * ** * * *************
consensus_1045#0 CACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGA 152
consensus_1045#1 CACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGA 420
************************************************************
consensus_1045#0 TTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGAT 212
consensus_1045#1 TTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGAT 480
************************************************************
consensus_1045#0 CTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGAT 272
consensus_1045#1 CTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGAT 540
************************************************************
consensus_1045#0 AGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGT 332
consensus_1045#1 AGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGT 600
************************************************************
consensus_1045#0 TTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAA 392
consensus_1045#1 TTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAA 660
************************************************************
consensus_1045#0 CAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAAT 452
consensus_1045#1 CAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAAT 720
************************************************************
consensus_1045#0 GGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCAT 512
consensus_1045#1 GGTTTGGTCGCTCTTAAAAAGAAAGA---------------------------------- 746
****************
consensus_1045#0 GAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTT 572
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAA 632
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAA 692
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 TATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAA 752
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 AACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTAC 812
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTT 872
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 ATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTT 932
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 TCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGA 992
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 TGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGA 1052
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCA 1112
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 TTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACT 1172
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 ACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCA 1232
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 ATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAA 1292
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 TGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACC 1352
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAA 1412
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGA 1472
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCT 1532
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTA 1592
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTG 1652
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 CAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCT 1712
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 AATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATA 1772
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGA 1832
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 AAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAA 1892
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 ACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAG 1952
consensus_1045#1 ------------------------------------------------------------
consensus_1045#0 GTATCTAGCTTT 1964
consensus_1045#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||