These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1383 fasta sequence [CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGT-CGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCG-ACGGAGCGCGGGCTG-TCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGCTCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACGACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACGGGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCTCCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAGCCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGAGTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAGACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATGGAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAA-CAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT-GCAGATGGGGTGATCA-TTGGCAGTGCA-ATGGTGAGGCAGCTGGGTGAAGCA-GCTTCTCCCA-AGCAAGGGCTGAAAAGGCTGGAGAA-GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA-AGTT-GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT-CCTTGGGGACTGTAAAACA-CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAAATTGCTGCAAAAATGTGCAAAAAAAAAAA] [+] EMBL AK072595 [CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGT CGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCG ACGGAGCGCGGGCTG TCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGCTCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACGACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACGGGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCTCCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAGCCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGAGTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAGACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATGGAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAAGCAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT GCAGATGGGGTGATCA TTGGCAGTGCA ATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCA AGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA AGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAA ] [+] EMBL AU029571 [ GCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGCCACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACACTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGTNCGTCGCCGGCTGCTTCTTCTTCTTCTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCACCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCGGGCGAACGGAGCGCGGGCTGTTCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAA GGGAAGACGGCGTTCATCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGC ] [+] EMBL BI810207 [ CAGGAGGATTTGTTTACCTGTTTAGTGTCAATGGAGTTACAGGATCTC CCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAA CAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT CAGATGGGGTGATCACTTGGCAGTGCACATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCACAGC AGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACACAGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACACCCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAA ] [+] EMBL AU029572 [ GACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTAAGCAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGT GCAGATGGGGTGATCA TTGGCAGTGCA ATGGTGAGGCAGCTGGGTGAAGCA GCTTCTCCCA AGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACA AGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCTTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTGCTGCAAAAA ] [+] EMBL BI804881 [ ACCCGCGTGTTGAGCATC CCTTCAGGAGATTAA CAGGTCACTGACAAA CTGTGTGT TT GCTATGGCATATCAACCCCTGATCATGTTAGACAGATA CAGAGTGGGGT CAGATGGGGTGATCA TTGCCAGT CACATGGTGA GCA CTGGGTGAA CA GCTTCTCCCACAGCAAGGGCTGAAAAGGCTGGAGAA GTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACACAGTT GCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTGCTGCAATTGTGTGCAAAAAAAAAAA] [+] EMBL BI810509 [ GCATCTCCTTCAGGAGATTAA CAGTTCACTGACCAAGCTGTGTGTGTT GCTATGGCATATCTACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGGCAGATGGGGTGATCA TTGGCAGTGCC ATGGTGAGGCAGCTGGGTGAATCATGCTTCTCCCA AGCAAGGGCTGAAAAGCCTGGAGAATGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTAT AAAACA AGTTGGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGC AATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGAT CCTTGGGGACTGTAAAACA CCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAA ] consensusID : consensus_10450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [AGGACGAGACAAGGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGCTGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGTAGTTTGTGAAAA] [-] EMBL CA759434 [AGGACGAGACAAGGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTAGACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGCTGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGTAGTTTGTGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10450#0 CATCCAAGCACACGCGCGCACACGCACGCACGCACGTACATCGCGCGCGCCACGCCACGC 60 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CACGCCGCGGTCACACCGTTCCAAGCCACTCTCACACGCACGCGCGTCGCCGCCACTACA 120 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CTCTCATGGCTTTCACGGTCAAGGCGTCGTCGCCGTCGTCGCCGGCTGCTTCTTCTTCTT 180 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CTTCCTCGGCGCCAGCTAAGCTCGGAGCGGCGCCGGGGAGGGTCGCGGTCAGGAAGCTCA 240 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CCGCGGCGGCGACGTCGCTTAGGCTCGATCGGGCGCCCGCGGCGCCGGCGACGGAGCGCG 300 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 GGCTGTCGTCGGTGTCGCGGACCATGTCGAGGCTGATGGAGAAGGGGAAGACGGCGTTCA 360 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 TCCCGTACATCACCGCCGGCGACCCGGACATGGGGACGACGGCGGAGGCGCTGCGGCTGC 420 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 TCGACGCGTGCGGCGCCGACGTCATCGAGCTCGGCGTGCCCTTCTCCGACCCCTACAACG 480 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 ACGGCCCCGTCATCCAGGCCTCCGCCGCGCGGGCGCTCTCCGCCGGCGCCACGATGGACG 540 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 GGATCATGTCGATGCTCGCGGAGGTGACGCCGGAGCTGTCATGCCCGGTGGTGCTCTTCT 600 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CCTATCTCGGCCCCATCGTCCGGCGAGGTCCGGCCAACTTCACCGCCGCAGCCAAAGAAG 660 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 CCGGCGTACAAGGTCTAATAGTACCTGATCTTCCTTACCTAGAGGCATGCTCTTTCAGGA 720 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 GTGAAGTTATCAAGAACAACCTAGAGCTGGTGCTGCTTACTACACCAACTACACCACCAG 780 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 ACAGGATGAAGGCAATCACAGCCGCCTCAGGAGGATTTGTTTACCTGGTTAGTGTCAATG 840 consensus_10450#1 ------------------------------------------------------------ consensus_10450#0 GAGTTACAGGATCTCGCCAAGACGTGAACCCGCGTGTTGAGCATCTCCTTCAGGAGATTA 900 consensus_10450#1 ------------------------------------------------AGGACGAGACAA 12 * **** * consensus_10450#0 ACAGG-TCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTA 959 consensus_10450#1 GGGGGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGATCATGTTA 72 ** ****************************************************** consensus_10450#0 GACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGC 1019 consensus_10450#1 GACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCAATGGTGAGGCAGC 132 ************************************************************ consensus_10450#0 TGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCC 1079 consensus_10450#1 TGGGTGAAGCAGCTTCTCCCAAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCC 192 ************************************************************ consensus_10450#0 TGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGAT 1139 consensus_10450#1 TGAAGAATGCACTTCCATAGAAGCTATAAAAACAAGTTGCTAAATAATGGCATGAGAGAT 252 ************************************************************ consensus_10450#0 TAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCC 1199 consensus_10450#1 TAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGCTGAAGCTGCC 312 ************************************************************ consensus_10450#0 TTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAA 1259 consensus_10450#1 TTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAA 372 ************************************************************ consensus_10450#0 TAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGG 1319 consensus_10450#1 TAAGTGATGTATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGG 432 ************************************************************ consensus_10450#0 TCGGATGTTAATTCTTCGGTTGTTCGAAGAAAAAAATTGCTGCAAAAATGTGCAAAAAAA 1379 consensus_10450#1 TCGGATGTTAATTCTTCGGTTGTTCGAAGAAAATAATTTGT-----AGTTTGTGAAAA-- 485 ********************************* **** * * * ** **** consensus_10450#0 AAAA 1383 consensus_10450#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||