These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence [CAGAGGCATCAGCCAAGCC-CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA] [+] EMBL CF331311 [CAGAGGCATCAGCCAAGCC CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAA GGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGTTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAA ] [+] EMBL AK110708 [ GAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGG ] [+] EMBL CA765797 [ GACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGGTGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCCGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCCCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGNTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTA ] [-] EMBL CF331312 [ CTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA] [+] EMBL AA750154 [ TCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATA TAGGCA TSGTACTGCTTGCTA ] consensusID : consensus_10455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACTTGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATG-AAAAAAAAAAGGGACTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTAACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC] [+] EMBL CB096920 [CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACTTGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATG AAAAAAAAAAGGGACTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTAAC ] [+] EMBL CF325174 [ ttttttcAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATGAAAAAAAAAAAGGGACTATTAGCTCAATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGTGTTTTCTATGTTAGTTTCTATCAATCTCTTTGAGTTTCTTTAACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10455#0 -CAGAGGCATCAGCCAAGCC-CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGG 58 consensus_10455#1 CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGG 60 ******************* *************************************** consensus_10455#0 TCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTC 118 consensus_10455#1 TCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTC 120 ************************************************************ consensus_10455#0 CGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAG 178 consensus_10455#1 CGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAG 180 ************************************************************ consensus_10455#0 ATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAG------------------ 220 consensus_10455#1 ATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACT 240 ****************************************** consensus_10455#0 -------------------ATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGG 261 consensus_10455#1 TGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGG 300 ***************************************** consensus_10455#0 GCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGA 321 consensus_10455#1 GAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGA 360 * ***************************** **************************** consensus_10455#0 AGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGC 381 consensus_10455#1 AGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATC 420 ******************************************************** * * consensus_10455#0 AGCAATTTTAGCTGATTCTACACCTGCTGT-TCCTGCGGCTCTTCGAGTCGAGCCTAAAT 440 consensus_10455#1 CTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATGAAAAAAAAAAGGGA 480 * *** * ** * * ** * * * * * ** * consensus_10455#0 CTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAAC 500 consensus_10455#1 CTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCT---T 537 *** *** ** ** ** **** * **** * ** consensus_10455#0 GGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAG 560 consensus_10455#1 TTACATAA-TTACCTAATTTCCATTCACAGGTCAAAATAGCAGTAT--AGCATGA--TAG 592 *** ** *** * * ** *** * ** * **** ** consensus_10455#0 AAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATC-- 618 consensus_10455#1 GAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTA 652 * * **** * ** * ** * **** ** ** * consensus_10455#0 ATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAG 678 consensus_10455#1 ACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC------------------------ 688 * * ** **** * *** * * * consensus_10455#0 AGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGA 738 consensus_10455#1 ------------------------------------------------------------ consensus_10455#0 TGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGC 798 consensus_10455#1 ------------------------------------------------------------ consensus_10455#0 ATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGC 858 consensus_10455#1 ------------------------------------------------------------ consensus_10455#0 TGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAA 918 consensus_10455#1 ------------------------------------------------------------ consensus_10455#0 CTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA 953 consensus_10455#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||