These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1912 fasta sequence [GAGCACGCGGCGCCCAAGCCCCTCTCACTTGCGCCGCCCGCCCGACCTCGCCGCCGACCACCTCCTCCTCCCTCCTCTTCTTCTTCCACGCGCTTCCCACCCCCCACCTCCATCCTTCGCCGCTAAGCGAAAATCCCGTGTCTTCCCTTCCTTCCTCCCCCGATCCATCTCGCTCTCTCGATTCCTTGCTCCGTGTGCGGGTTCGGTTCTTGTGGTGCGAGATCTGGGCGCGAGAGGAGAAACCCCGATCTTGATTTGGGTGGCGTCGCGTCGCGTCGGCGGCGGTGATGTGGGGGGACGGGAAGGCGATGCTGAAGTCGCGGGGAGGGGGGGCGGCGGGGGGAGCGGGTGGCGCCTCCGGGGACGAGGAGGCGGACTACTGCCCGCCGACGCCGCGGAAGGAGTGGTGGACGACGGGGCTCCTCGTGAGGCTGGTCACCGTGGCCGTCATCTTCATGGCGGGCGTGGTCATCGGGCTCTCCGCGAGCGCCAACGTGTCCCGCTACTACTACAACTCGCACACCGAGCTCTTCTTCCCGTCGAACACCTTCGGCGCGTGCGAGCGCGCCGACTGCGCCCCGACCTTCAAGTCGTTCGTCCACCCGCCGCACCTCGCGCACTCCATGTCCGACCCGGAGCTCTTCTGGCGCGCCTCCCTCGTCCCCGTCGCCGACGACTTCCCCTTCCAGCGCGTCCCCAAGGTCGCCTTCCTCTTCATGACGCGCGGCCCGCTCCCCTTCGCGCCGCTCTGGGACCGCTTCTTCCGCGGCCACCACGGCCTCTACTCCGTCTACGTCCACACCCTCCCCGACTACAAGCTCAACGTCTCCAAGAACTCCGCCTTCTTCGCCCGCCAGATCCCCAGCGAGGAAGTGTCCTGGGGATCGATCACCCTTGTTGATGCTGAGAAGCGGCTGCTGG-CCAATGCCTTGTTGGATTTCTCCAATGAGCGGTTCGTTCTTCTCTCGGAGAGCTGCATCCCCGTGTTCAACTTCCCAACCGTCTATGAGTATCTCATAAACTCGGCACACAGCTTCGTGGAGTCCTATAACATTGACACCCCTCAATGTGCTGGCCGCTACAACCGGCGGATGGCTCCTCACATCTTGCCGAGTCAATGGAGAAAAGGGTCAGAGTGGTTTGAGCTCAACCGT-GAACTGGCCTTGCGGATAATAGCAGACAACAAGTACTACTCAATCTTCA-GGAAGCATTGCAGACCATCTT-GT-TATCCGGATGAGCA-TTACATACCAACCTATCTG-CATTTGTT-TCATGGGTCCCTGAATGCCAACAGGACCATCACATGGGTTGATTGGTCAAGAGGAGGTCCACACCCAGCAAGATATGGTGCTTCAAACATCAGTGAAGAGTTCATCCAGGCTATCAGGAATAACGGTACACGATGCACTTACAACT-CGAAGCCCAC-TTCTGTCTGCTATCT-GTTTGCTAGGAAGTTTGCTCCT-AGCGCT-CTCGGGCCATTGATGAACCTCAC-TTCGACCATATTGGAC-TTTTGAGTTACTCACCATTCTTCATTGGCATCACGCTACCGGACTATCTCCATCGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGACGCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACT-TCACCTGCCCT-GAAGCTGAT-TCCT-GAGTATAGGAT-GAAT-GGAGCT-GCATACGGAGAGGACTTTTGTTT-CACCTCCCATT-CT-TT-TTAT-T-AT-ATCAT-AGCTATAT-GATATT-AGAGCT-TTTCT-TT-TTCTTCTTTCCCCATCCATTGTAATGACTTGGTCAGGATACTAATTTCTGTGAATATAACCTATCAATCATTGCTTTTACTTGAAAAAAA] [+] EMBL AK100025 [GAGCACGCGGCGCCCAAGCCCCTCTCACTTGCGCCGCCCGCCCGACCTCGCCGCCGACCACCTCCTCCTCCCTCCTCTTCTTCTTCCACGCGCTTCCCACCCCCCACCTCCATCCTTCGCCGCTAAGCGAAAATCCCGTGTCTTCCCTTCCTTCCTCCCCCGATCCATCTCGCTCTCTCGATTCCTTGCTCCGTGTGCGGGTTCGGTTCTTGTGGTGCGAGATCTGGGCGCGAGAGGAGAAACCCCGATCTTGATTTGGGTGGCGTCGCGTCGCGTCGGCGGCGGTGATGTGGGGGGACGGGAAGGCGATGCTGAAGTCGCGGGGAGGGGGGGCGGCGGGGGGAGCGGGTGGCGCCTCCGGGGACGAGGAGGCGGACTACTGCCCGCCGACGCCGCGGAAGGAGTGGTGGACGACGGGGCTCCTCGTGAGGCTGGTCACCGTGGCCGTCATCTTCATGGCGGGCGTGGTCATCGGGCTCTCCGCGAGCGCCAACGTGTCCCGCTACTACTACAACTCGCACACCGAGCTCTTCTTCCCGTCGAACACCTTCGGCGCGTGCGAGCGCGCCGACTGCGCCCCGACCTTCAAGTCGTTCGTCCACCCGCCGCACCTCGCGCACTCCATGTCCGACCCGGAGCTCTTCTGGCGCGCCTCCCTCGTCCCCGTCGCCGACGACTTCCCCTTCCAGCGCGTCCCCAAGGTCGCCTTCCTCTTCATGACGCGCGGCCCGCTCCCCTTCGCGCCGCTCTGGGACCGCTTCTTCCGCGGCCACCACGGCCTCTACTCCGTCTACGTCCACACCCTCCCCGACTACAAGCTCAACGTCTCCAAGAACTCCGCCTTCTTCGCCCGCCAGATCCCCAGCGAGGAAGTGTCCTGGGGATCGATCACCCTTGTTGATGCTGAGAAGCGGCTGCTGG CCAATGCCTTGTTGGATTTCTCCAATGAGCGGTTCGTTCTTCTCTCGGAGAGCTGCATCCCCGTGTTCAACTTCCCAACCGTCTATGAGTATCTCATAAACTCGGCACACAGCTTCGTGGAGTCCTATAACATTGACACCCCTCAATGTGCTGGCCGCTACAACCGGCGGATGGCTCCTCACATCTTGCCGAGTCAATGGAGAAAAGGGTCAGAGTGGTTTGAGCTCAACCGT GAACTGGCCTTGCGGATAATAGCAGACAACAAGTACTACTCAATCTTCA GGAAGCATTGCAGACCATCTT GT TATCCGGATGAGCA TTACATACCAACCTATCTG CATTTGTT TCATGGGTCCCTGAATGCCAACAGGACCATCACATGGGTTGATTGGTCAAGAGGAGGTCCACACCCAGCAAGATATGGTGCTTCAAACATCAGTGAAGAGTTCATCCAGGCTATCAGGAATAACGGTACACGATGCACTTACAACT CGAAGCCCAC TTCTGTCTGCTATCT GTTTGCTAGGAAGTTTGCTCCT AGCGCT CTCGGGCCATTGATGAACCTCAC TTCGACCATATTGGAC TTTTGAGTTACTCACCATTCTTCATTGGCATCACGCTACCGGACTATCTCCATCGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGACGCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACT TCACCTGCCCT GAAGCTGAT TCCT GAGTATAGGAT GAAT GGAGCT GCATACGGAGAGGACTTTTGTTT CACCTCCCATT CT TT TTAT T AT ATCAT AGCTATAT GATATT AGAGCT TTTCT TT TTCTTCTTTCCCCATCCATTGTAATGACTTGGTCAGGATACTAATTTCTGTGAATATAACCTATCAAT ] [+] EMBL AU032266 [ AGTGTCCTGGGGATCGATCACCCTTGTTGATGCTGAGAAGCGGCTGCTGGACCAATGCCTTGTTGGATTTCTCCAATGAGCGGTTCGTTCTTCTCTCGGAGAGCTGCATCCCCGTGTTCAACTTCCCAACCGTCTATGAGTATCTCATAAACTCGGCACACAGCTTCGTGGAGTCCTATAACATTGACACCCCTCAATGTGCTGGCCGCTACAACCGGCGGATGGCTCCTCACATCTTGCCGAGTCAATGGAGAAAAGGGTCAGAGTGG TTGAGCTCAACCGTGGAACTGGCCTTNCGGATAATAGCAGACAACAAGTACTACTCAATCTTCAGGGAAGCATTGCAGACCATCTTGGTNTATCCGGATGAGCATTTACATACCAACCTATCTGTCATTTGTT TCATGGGTCCCTGAATGCCAACAGGgac ] [+] EMBL OS1017A [ TGTCCTGGGGATCGATCACCCTTGTTGATGCTGAGANGCGGCTGCTGG CCAATGCCTTGTTGGATTTCTCCAATGAGCGGTTCGTTCTTCTCTCGGAGAGCTGCATCCCCGTGTTCAACTTCCCAACCGTCTATGAGTATCTCATAAACTCGGCACACAGCTTCGTGGAGTCCTATAACATTGACACCCCTCAATGTGCTGGCCGCTACAACCGGCGGATGGNTCCTCACATCTTGCCGAGTCAATGGAGAAAAGGGTCAGAGTGGTTTGAGCTCAACCGT GAACTGGCCTTGCGGATAATAGCAGACAACAAGTACTACTCAATCTTCA GGAAGCATTGCAGACCATCTT GT TATCCGGATGAGCA TTACATACCANCCTATCTG CATTTGTTGTCATGGGTCCCTGAATGCCAA ] [+] EMBL CF309392 [ AGCGGCTGCTGG CCAATGCCTTGTTGGATTTCTCC ATGAGCGGTTCGTTCTTCTCTCGGAGAGCTGCATCCCCGTGTTCAACTTCCCAACCGTCTATGAGTATCTCATAAACTCGGCACACAGCTTCGTGGAGTCCTATAACATTGACACCCCTCAATGTGCTGGCCGCTACAACCGGCGGATGGCTCCTCACATCTTGCCGAGTCAATGGAGAAAAGGGTCAGAGTGGTTTGAGCTCAACCGT GAACTGGCCTTGCGGATAATAGCAGACAACAAGTACTACTCAATCTTCA GGAAGCATTGCAGACCATCTT GT TATCCGGATGAGCA TTACATACCAACCTATCTG CATTTGTT TCATGGGTCCCTGAATGCCAACAGGACCATCACATGGGTTGATTGGTCAAGAGGAGGTCCACACCCAGCAAGATATGGTGCTTCAAACATCAGTGAAGAGTTCATCCAGGCTATCAGGAATAACGGTACACGATGCACTTACAACT CGAAGCCCAC TTCTGTCTGCTATCT GTTTGCTAGGAAGTCTGCTCCT AGCGCT CTCGGGCCATTGATGAACCTCAC TTCGACCATATTGGACTTTTTGAGTTACTCACCATTCTTCATTGG ] [-] EMBL CF309393 [ ATGGTGCTTCAAACATCAGTGAAGAGTTCATCCAGGCTATCAGGAATAACGGTACACGATGCACTTACAACT CGAAGCCCAC TTCTGTCTGCTATCT GTTTGCTAGGAAGTCTGCTCCT AGCGCT CTCGGGCCATTGATGAACCTCAC TTCGACCATATTGGAC TTTTGAGTTACTCACCATTCTTCATTGGCATCACGCTACCGGACTATCTCCATCGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGACGCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACT TCACCTGCCCT GAAGCTTAT TCCT GAGTATAGGAT GAAT GGAGCT GCATACGGAGAGGACTTTTGTTT CACCTCCCATT CT TT TTAT T AT ATCAT AGCTATAT GATATT AGAGCT TTTCT TT TTCTTCTTTCCCCATCCATTGTAATGACTTGGTCAGGATACTAATTTCTGTGAATATAACCTATCAATCATTGCTTTTACTTGAAAAAA ] [+] EMBL BI806023 [ TACAACTGCGAAGCCCACGTTCTGTCTGCTATCTGGTTTGCTAGGAAGTTTGCTCCTGAGCGCTGCTCGGGCCATTGATGAACCTCACNGGCGACCATATTGGAC TTTTGAGTTACTCACCATTCTTCATTGGCATCACGCTACCGGACTATCTCCATCGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGACGCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACTGTCACCTGCCCTGGAAGCTGATGTCCTGGAGTATAGGATGGAATCGGAGCTGGCATACGGAGAGGACTTTTGTTTGCACCTCCCATTGCTGTTGTTATGTGATGATCATGAGCTATATGGATATTGAGAGCTGTTTCTGTTGTTCTTCTTTCCCCATCC TTGTAATGACTTGGTCAGGATACTAATTTCTGTGAATATAACCTATC ATCATTGCTTTTA AAAAAAA] [+] EMBL AU032267 [ cCATTGGNATCACGCTACCGGACTATCCCCATCGGCACACATACTCCATGAGGAGTAGCGGTACACTATACATGTTTGGGGGCATGTATCGCATGACAGATGGATCGGAGACGCCTTTCGATGAGTCGTCACCCATCTCTGATGGATGATGCTGTGCGGGCAGTGAAGATTACT TCACCTGCCCT GAAGCTGAT TCCT GAGTATAGGAT GAAT GGAGCT GCATACGGAGAGGACTTTTGTTT CACCTCCCATT CT TT TTAT T AT ATCAT AGCTATAT GATATT AGAGCT TTTCT TT TTCTTCTTTCCCCATCCATTGTAATGACTTGGTCAGGATACTAATTTCTGTGAATATAACCTATCAATCATTGCTTTTACTTGAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||