These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1596 fasta sequence [TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTAATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG-TTGGTGCCTTCTAGCTCCGGCGAGGCCTCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCCCCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGCCGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACCCACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGACGACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCTGTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAGTTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGGATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGCGGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGACGGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGACGGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAGGACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAGATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTATTTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCATTAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACGGATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT] [+] EMBL AK109893 [TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTAATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG TTGGTGCCTTCTAGCTCCGGCGAGGCCTCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCCCCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGCCGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACCCACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGACGACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCTGTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAGTTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGGATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGCGGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGACGGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGACGGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAGGACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAGATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTATTTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCATTAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACGGATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT] [+] EMBL AU070234 [ CACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCNACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG TTGGTGCCTTCTAGCTCCGGCGANGCCTCG CGGANGCCGTCCTGATGAGCCCCACCTCCACTCTC ] [+] EMBL AU162530 [ CACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCNAGTATTAGCATGTTGAGGAAGAGAGCNAAGCCAAGTAGCAGTNGTGGAGGCAGCTACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTGTTTGGTGCCTNCTAGCTCCGGCGAGGC ] [-] EMBL C74524 [ ACTGGCTGATTCAATCAGCCAGGTTAATTTTCAGAANTTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGNCNTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGA ] [+] EMBL AU094813 [ CAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATG ] consensusID : consensus_10459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence [TCGACTCGCCAGA-TTTTTTA-TTTTGTAAACTCCAACTTGCTGATT-CAATC-AGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNTGGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU173829 [TCGACTCGCCAGA TTTTTTA TTTTGTAAACTCCAACTTGCTGATT CAATC AGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNTGGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU032259 [ GCCAGANTCTTCTATTTTTGTAAACTCCAACTTGCTGATTACAATCNAGCCAGGTTAATTTTCAGNAATTGGAGAAGAAGATCAGCGTNATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTNATGCAACTGTTGNGTTCCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10459#0 TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTA 60 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 ATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTG 120 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 AAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTG 180 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGC 240 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 AGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGC 300 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTGTTGGTGCCTTCTAGCTCCGGCGAGGCC 360 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 TCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCC 420 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 CCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGC 480 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 CGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACC 540 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 CACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGAC 600 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCT 660 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAG 720 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 TTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGG 780 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 ATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGC 840 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGAC 900 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGAC 960 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAG 1020 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAG 1080 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 ATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTAT 1140 consensus_10459#1 ---------------------------------------TCGACTCGCCAGATTTTTTAT 21 ************** ** *** consensus_10459#0 TTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGA 1200 consensus_10459#1 TTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGA 81 ************************************************************ consensus_10459#0 AGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAAT 1260 consensus_10459#1 AGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAAT 141 ************************************************************ consensus_10459#0 GGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCT 1320 consensus_10459#1 GGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNT 201 ************************************ ********************* * consensus_10459#0 GGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGAC 1380 consensus_10459#1 GGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGAC 261 **** ******************************************************* consensus_10459#0 TTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGT 1440 consensus_10459#1 TTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGT 321 **** *********************** * ***************************** consensus_10459#0 ATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCAT 1500 consensus_10459#1 ATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA--- 378 *********************************** * * * * consensus_10459#0 TAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACG 1560 consensus_10459#1 ------------------------------------------------------------ consensus_10459#0 GATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT 1596 consensus_10459#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||