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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1122 fasta sequence
[TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAACAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTTTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA-TGAGG-AGCAGTCTCCATTAC-CCGTCTGCGCCTCGGATCCTGCATACTGC-TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC]
[+] EMBL CF309035 [TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAACAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTCTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTC ]
[+] EMBL CF308952 [ TTTTTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGCTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTTAGCGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCAT ]
[+] EMBL CA763420 [ TTTTTTTTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAACATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCATACTGC TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGGGACTGCCGTTTCAACAGCCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAG ]
[-] EMBL CF309034 [ TGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCATACTGC TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGACGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACC ]
[-] EMBL OS1321606 [ ACTGCAATGAG TGCCACACCAG AGCATAATGGTGAACGTTATCGTCAATGA CGGCACCATTGAGGAAGNAGTCTCCATTACNCCGTTTGCGNCTCGGATCCTGCATACTGCTTCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTNAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGna ]
[-] EMBL CF308951 [ CTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC]
consensusID : consensus_10465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[CTGTTNCCTTTATCCTCTAAACATANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCTAGCTGTTTGGCACCTTTCCTGCACAAATTTCACCCTTTTCTAGGCTAACCTCAATAANAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGATCGANCTCAAACTTTCACAAAGAAGAGCNTACCTGNAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCNCTCCNCCTCTGCACACATNCCCTGTGAGCATNCTGCACATGCACAAATTANCAAACNCAANCCATAACCACATCNTTTTAGCCTGCTAGCAANCTAGTANATTAATCATCACAAGAACCATATCATGCATGTANCANCTACAAGAAATGCAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGTANCTTTGTACCTACCTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCTGTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN]
[-] EMBL CB096523 [CTGTTNCCTTTATCCTCTAAACATANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCTAGCTGTTTGGCACCTTTCCTGCACAAATTTCACCCTTTTCTAGGCTAACCTCAATAANAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGATCGANCTCAAACTTTCACAAAGAAGAGCNTACCTGNAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCNCTCCNCCTCTGCACACATNCCCTGTGAGCATNCTGCACATGCACAAATTANCAAACNCAANCCATAACCACATCNTTTTAGCCTGCTAGCAANCTAGTANATTAATCATCACAAGAACCATATCATGCATGTANCANCTACAAGAAATGCAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGTANCTTTGTACCTACCTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCTGTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10465#0 TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAA 60
consensus_10465#1 ------------------------------------------------------------
consensus_10465#0 CAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTTTTTTGTTGCAATCTTCACT 120
consensus_10465#1 ------------------------------------------------------------
consensus_10465#0 TATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCA 180
consensus_10465#1 ------------------------------------------------------------
consensus_10465#0 GACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGT 240
consensus_10465#1 ------------------------------------------------------------
consensus_10465#0 TGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATT 300
consensus_10465#1 ------------------------------------------------------------
consensus_10465#0 TAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCA 360
consensus_10465#1 -------------------------------------CTGTTNCCTTTATCCTCTAAACA 23
*** * * * * * **
consensus_10465#0 TACTGT-GCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAAC 419
consensus_10465#1 TANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCT 83
** *** *** * * * * * ** ** ** ** **
consensus_10465#0 TGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAG 479
consensus_10465#1 AGCTGTTTGGCACCTT---TCCTGC--ACAAATTTCACCCTTTTCTAGGCTAACCTCAAT 138
* *** * * * ** *** ** * ** * *** * ***
consensus_10465#0 ATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCT 539
consensus_10465#1 AA--NAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGAT 196
* ** ** * ** * *** * * * ** * *
consensus_10465#0 TCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTC 599
consensus_10465#1 CGANCTCAAACTTTCACAAAGAAGAGCN-TACCTGNAG-------GCAAATCTCACAGAG 248
* * ** *** ** ** *** * ** * ** * * *
consensus_10465#0 AATGATCGGCACCATGAGGAGCAGTCTCCATTACCCGTCTGCGCCTCGGATCCTGCATAC 659
consensus_10465#1 TGTGCTCCCCTTCTCATCNCTCCNCCTCTGC-ACACATNCCCTGTGAGCATNCTGCACA- 306
** ** * * * *** ** * * * * ** ***** *
consensus_10465#0 TGCTCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGAC- 718
consensus_10465#1 TGCAC---AAATTANCAAACNCAANCCATAACCA-CATCNTTTTAGC-CTGCTAGCAANC 361
*** * * * * ** * * **** * * *** ** *
consensus_10465#0 TGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTG 778
consensus_10465#1 TAGTANATTAATCATCACAAGAACCATATCATGCATG-TANCANCT-ACAAGAAAT---G 416
* * ** * * * * * * * *** * * ** ** **** *
consensus_10465#0 GAGGCAAATCTCACAGA-GTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCC 837
consensus_10465#1 CAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGT-ANCTTTGTACCTACC--- 472
*** ** *** ** * ** ** * * *** * * ** ** ** * *
consensus_10465#0 TGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACT 897
consensus_10465#1 -----------TTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACT 521
*************************************************
consensus_10465#0 CATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACG 957
consensus_10465#1 CATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACG 581
*************************** ********************************
consensus_10465#0 AAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCT 1017
consensus_10465#1 AAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCT 641
************************************************************
consensus_10465#0 CATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCT 1077
consensus_10465#1 CATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCT 701
****** ********************************************** ******
consensus_10465#0 GCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC------ 1122
consensus_10465#1 GTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN 752
* *********** *******************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||