These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2946 fasta sequence [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGATGGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTTTTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCTAAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTCAACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCAAGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATCAACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGACTCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTGTTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGTGAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATTTCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGGGTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGAAGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTTAGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATATCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAATCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCTTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA] [+] EMBL AK066735 [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGATGGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTTTTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCTAAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTCAACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCAAGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATCAACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGACTCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTGTTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGTGAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATTTCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGGGTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGAAGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTTAGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATATCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAATCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCTTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA] [+] EMBL CF197150 [ GAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCACATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGNNCANNTGGACATTCAGNNNCCAATAAATGCCAAGTGGCAAAAATTGTCTGnnnna ] [+] EMBL CF340065 [ GCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCA ] [+] EMBL CF339071 [ GCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGT ] consensusID : consensus_10469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1480 fasta sequence [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAAGTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATGAGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTACCTGCCTCTTTGCTTGTATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTATGATTGAATTCATTCAACCAGCACATGGACTTTTACTTCTAACCAAGAAACAGAGTACTTCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTAACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAATCATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCAAGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCTTTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAGTTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATTA] [+] EMBL AK110917 [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAAGTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATGAGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTACCTGCCTCTTTGCTTGTATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTATGATTGAATTCATTCAACCAGCACATGGACTTTTACTTCTAACCAAGAAACAGAGTACTTCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTAACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAATCATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCAAGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCTTTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAGTTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATTA] consensusID : consensus_10469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC] [-] EMBL CF325545 [GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC] consensusID : consensus_10469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTGGTAATTGAACTCTTGGTATTCTTATTGCAAAACATGAAAACGTACTTGTTAAACAACATATGCAGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCAC] [+] EMBL C74886 [ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTGGTAATTGAACTCTTGGTATTCTTATTGCAAAACATGAAAACGTACTTGTTAAACAACATATGCAGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10469#0 TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGA 60 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCAC 120 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTG 180 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 ACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAG 240 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATA 300 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTG 360 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCC 420 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGC 480 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 TCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATG 540 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 ACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGAT 600 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 CTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATT 660 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCA 720 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTG 780 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAG 840 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAA 900 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 ACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCT 960 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 TACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAG 1020 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAA 1080 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGC 1140 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 TGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATA 1200 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGAT 1260 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 GGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTT 1320 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 TTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCT 1380 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTC 1440 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCA 1500 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATC 1560 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ------------------------------------------------------------ consensus_10469#0 AACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGAC 1620 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 -------------------TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGC 41 consensus_10469#0 TCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTG 1680 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGA 101 consensus_10469#0 TTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGT 1740 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAG 161 consensus_10469#0 GAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATT 1800 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAG 221 consensus_10469#0 TCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGG 1860 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 CATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGAC 281 consensus_10469#0 GTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGA 1920 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 CAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAAT 341 consensus_10469#0 AGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTT 1980 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 CAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAA 401 consensus_10469#0 AGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATA 2040 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTT 461 consensus_10469#0 TCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAA 2100 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAG 521 consensus_10469#0 TCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAAC 2160 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCAT 581 consensus_10469#0 ATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAG 2220 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 TCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAA 641 consensus_10469#0 CTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGG 2280 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 ATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAAT 701 consensus_10469#0 CTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACAT 2340 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATT 761 consensus_10469#0 AAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGAT 2400 consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAA 821 consensus_10469#0 GGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTG-----AGGGAGGTAA 2455 consensus_10469#2 --------GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTG-----AGGGAGGTAA 47 consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 GTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAA 881 consensus_10469#0 ATGCTGCGCCGACGGAAAGGTTCTCAA-GCTGGGGATCCCTGTTTCCGTGTCATCT-ATG 2513 consensus_10469#2 ATGCTGCGCCGACGGAAAGGTTCTCAA-GCTGGGGATCCCTGTTTCCGTGTCATCT-ATG 105 consensus_10469#3 ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTG-GTA 59 consensus_10469#1 GTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATG 941 * * * * * * * consensus_10469#0 TATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCA 2573 consensus_10469#2 TATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCA 165 consensus_10469#3 ATTGAACTCTTGGTATTCTTATTGCAAAACATGAA-AACGTA-CTTGTTAAACAACATAT 117 consensus_10469#1 AGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTA-CCTGCCTCTTTGCTTGT 1000 * * ** * * ** * ** * consensus_10469#0 GTCTCTGCGTGACACTCTGAA---GAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGC 2630 consensus_10469#2 GTCTCTGCGTGACACTCTGAA---GAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGC 222 consensus_10469#3 GCAGGTATATGG---TTTCAT---GGAAAATTTGTGCAATACCTTACAGAAGCATCATGG 171 consensus_10469#1 ATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTA 1060 * * * * * ** * **** * consensus_10469#0 CTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATT 2690 consensus_10469#2 CTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATT 282 consensus_10469#3 TCTAGGTCTGCAGC-CAGTGGCTCATTGTC-CATTTT------CTTCTGGAGGATCCATT 223 consensus_10469#1 TGATTGAATTCATTCAACCAGCACATGGAC-TTTTACTTCTAACCAAGAAACAGAGTACT 1119 * * * * * ** * ** * * * * consensus_10469#0 CTTCA----------GCTTTCCAGCTTCCTGGCA----TAAATGTTGATGAATTTGTCGC 2736 consensus_10469#2 CTTCA----------GCCTTCCAGCTTCCTGGCA----TAAATGTTGATGAATTTGTCGC 328 consensus_10469#3 TTGTA----------GTTTTTCGG-TTCCTTCTA----TCCATCCT--TAGATCTGTT-- 264 consensus_10469#1 TCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTA 1179 * * * ** * * * ** * * *** consensus_10469#0 CATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTA-TCTCGTTGATT 2795 consensus_10469#2 CATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTA-TCTCGTTGATT 387 consensus_10469#3 -AGGAACA---GGAAGGCCTTGGCAACT---GCCAAAGTGCTCA-CTA-ACAAACACACT 315 consensus_10469#1 ACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAAT 1239 * * ** * ** * *** ** * * consensus_10469#0 AAGACACAGTTTCCACC--TGGGGACCGTGTGATCG------ACGGAGTCCTGAAATTTG 2847 consensus_10469#2 AAGACACAGTTTCCACC--TGGGGACCGTGTGATCG------ACGGAGTCCTGAAATTTG 439 consensus_10469#3 GTTGCAGAGAGCCTTCC--TGCTGGTGTTGAGAA-G------CCATAATCCCCATATCCA 366 consensus_10469#1 CATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCA 1299 * * ** ** * ** * * * * * consensus_10469#0 --TTACTGAAGCAGTCAAGCAGAGGATGTAATAC--TGTGCTGTAACCAGATCTTCACGT 2903 consensus_10469#2 --TTACTGAAGCAGTCAAGCAGAGGATGTAATAC--TGTGCTGTAACCAGATCTTCACGT 495 consensus_10469#3 A-CTGTTGTCACAG--AAATGACTGATA-AATAG--AAGCTATCAATCCAATTTAGACCC 420 consensus_10469#1 AGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCT 1359 * * * * * *** * * * consensus_10469#0 TGTT--CGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA--------------- 2946 consensus_10469#2 TGTT--CGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC------ 547 consensus_10469#3 TCCA--C----------------------------------------------------- 425 consensus_10469#1 TTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAG 1419 * consensus_10469#0 ------------------------------------------------------------ consensus_10469#2 ------------------------------------------------------------ consensus_10469#3 ------------------------------------------------------------ consensus_10469#1 TTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATT 1479 consensus_10469#0 - consensus_10469#2 - consensus_10469#3 - consensus_10469#1 A 1480 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||