cluster # 10473

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Oryza sativa
cluster # 10473 cluster # 10473 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10473#0 length = 812 sequences # 6

consensus_10473#1 length = 317 sequences # 1

consensusID : consensus_10473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 812
fasta sequence

                              [TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCCCTTACCTAACGTATTGTTGAACACAAAAAAAA]

[+] EMBL AK109215             [TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACACGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGCGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCT                                                                                                                                                                               ]
[+] EMBL CF325892             [        CTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGCTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCC                                                                                                                                                                                                                                                                            ]
[+] EMBL AU078617             [                            CATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGANGGCGACAG TGCTGCCCCATGCGCCGCCGCNGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU078618             [                                                                                                                                                                                     TCTTGGCCGGCACNGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCNATGCGCCGCCGCCGCCG CNCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAA                                                                                                                                                              ]
[+] EMBL CF313438             [                                                                                                                                                                                                                                                                                                                                                                                                                          CAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGA                                                                                                                                                                                                                                                                                ]
[+] EMBL CF314037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCCCTTACCTAACGTATTGTTGAACACAAAAAAAA]




>consensus_10473#0
TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACT
TACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCC
GTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCC
TTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGC
TGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGAC
CAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAG
AGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAG
AAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTT
GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGA
TTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTG
TGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTG
TTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCC
CTTACCTAACGTATTGTTGAACACAAAAAAAA

consensusID : consensus_10473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [AAGGAGCCCGAGGGCCCTTGCCATGGGCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAAAAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGATTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGGGGGATTGCCAAAAATAAGGGAATTTCCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF313439             [AAGGAGCCCGAGGGCCCTTGCCATGGGCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAAAAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGATTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGGGGGATTGCCAAAAATAAGGGAATTTCCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10473#1
AAGGAGCCCGAGGGCCCTTGCCATGGGCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAA
AAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTT
GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGA
TTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGG
GGGATTGCCAAAAATAAGGGAATTTCCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10473#0      TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACT 60
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      TACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCC 120
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      GTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCC 180
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      TTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGC 240
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      TGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGAC 300
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      CAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAG 360
consensus_10473#1      --------------------------------------------------------AAGG 4
                                                                                  *

consensus_10473#0      AGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAG 420
consensus_10473#1      AGCCCGAGGGCCCTTGCCATGG----GCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAA 60
                       ***  ******     * * *      * *****   ********  *  ****** ** 

consensus_10473#0      AAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTT 480
consensus_10473#1      AAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTT 120
                       ****** *** **** *** *********** ***** * ** *****************

consensus_10473#0      GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGA 540
consensus_10473#1      GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGA 180
                       ***************************************************** ******

consensus_10473#0      TTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTG 600
consensus_10473#1      TTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGG 240
                       ***** ***** ************* ************* * **************** *

consensus_10473#0      TGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAA 660
consensus_10473#1      GGGATTGCCAAAAATAAGGGAAT-------------TTCCCTTTTTTAAAAAAAAAAAAA 287
                        * **** ********** ****             *  *  ** ***************

consensus_10473#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTG 720
consensus_10473#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 317
                       ******************************                              

consensus_10473#0      TTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCC 780
consensus_10473#1      ------------------------------------------------------------
                                                                                   

consensus_10473#0      CTTACCTAACGTATTGTTGAACACAAAAAAAA 812
consensus_10473#1      --------------------------------