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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 790 fasta sequence
[TTTTTTTTTTTTTTTTTTCTCTGGCTGTAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCA-CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANA-TTCGTTATACTAGGGAAT-ATCA-CCT-CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACTGACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGATGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA]
[-] EMBL AU173515 [TTTTTTTTTTTTTTTTTTCTCTGGCTGTAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCACCGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCANTAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTNAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTTCGTTATACTAGGGAATNATCACCCTCCCAATACCcag ]
[-] EMBL AU184579 [TTTTTTTTTTTTTTTTTTCTCTGGCTGAAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAANAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGNCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACANAAGGTTGCCTANA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGT ]
[+] EMBL CB655534 [ gcaaagaTTCTCTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACTGACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGATGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA]
[+] EMBL CB636315 [ ACCCTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGC ]
consensusID : consensus_10488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATGCAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAATTCTTTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGGGTCGGCACGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTCGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGTACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTTCCGTAAGG]
[+] EMBL CA759735 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATGCAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAATTCTTTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGGGTCGGCACGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTCGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGTACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTTCCGTAAGG]
consensusID : consensus_10488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAACGCCCTCCCCGACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAGCGCCTCCGCCTCGGCTACCTCCCCTCCTCCTCCTCCTCCACGCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATTCGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT]
[+] EMBL CF326313 [ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGG ]
[+] EMBL CB655533 [ ATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAACGCCCTCCCCGACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAGCGCCTCCGCCTCGGCTACCTCCCCTCCTCCTCCTCCTCCACGCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATTCGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10488#0 ------------------------------------------------------------
consensus_10488#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATG 60
consensus_10488#2 ------------------------------------------------------------
consensus_10488#0 --------------------------TTTTTTTTTTTTTTTTT-TCTCTGGCTGTAACCT 33
consensus_10488#1 CAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAAT-TCTTTTGCTGTAACCC 119
consensus_10488#2 --------------------------ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTT 34
* ** * * **
consensus_10488#0 TGAAGTAGTCAGTGTCCAAGGTGTC-GGCACGATCTGACAAAATCCGTAAATCACAACGA 92
consensus_10488#1 TGAAGTAGTCAGTGTCCAAGGGGTC-GGCACGATCTGACAAAATCCGTAAATCACAACGA 178
consensus_10488#2 CCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCG---CCGACAATGGCGATGG 91
** ** *** * * * * ***** * * *** *** * * *
consensus_10488#0 TCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAA-TGAAGGAAAA 151
consensus_10488#1 TCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAA 238
consensus_10488#2 CGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAAC 151
* ** * * * * *** * **
consensus_10488#0 GAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAA 211
consensus_10488#1 GAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAA 298
consensus_10488#2 GCCCTCCCC---------GACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAG 202
* ** * *** ** * ** * ** ** *
consensus_10488#0 CGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAG 271
consensus_10488#1 CGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAG 358
consensus_10488#2 CGCCTCCGCCTCGGCTACCTCCCCT----CCTCCTCCTCCTCCACGCCTGAATCATCAAG 258
*** * * * * * * * * **************
consensus_10488#0 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 331
consensus_10488#1 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 418
consensus_10488#2 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 318
************************************************************
consensus_10488#0 CCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANATT 391
consensus_10488#1 CCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATT 478
consensus_10488#2 CCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATT 378
************** ***************************************** ***
consensus_10488#0 CGTTATACTAGGGAATATCACCTCCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGT 451
consensus_10488#1 CGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGT 538
consensus_10488#2 CGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGT 438
**************** ******* ******* **************************
consensus_10488#0 ACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTC 511
consensus_10488#1 ACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAA-TGCGCAACCATCCACTC 597
consensus_10488#2 ACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTC 498
****** *********************************** *****************
consensus_10488#0 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGC 571
consensus_10488#1 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGC 657
consensus_10488#2 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGC 558
************************************ ***** *****************
consensus_10488#0 TATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGT 631
consensus_10488#1 TATCCATTTGGTAGCTGATTCCTTTCCGTAAGG--------------------------- 690
consensus_10488#2 TATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGT 618
************************ *******
consensus_10488#0 GATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACT 691
consensus_10488#1 ------------------------------------------------------------
consensus_10488#2 GATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT 678
consensus_10488#0 GACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGA 751
consensus_10488#1 ------------------------------------------------------------
consensus_10488#2 ------------------------------------------------------------
consensus_10488#0 TGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA 790
consensus_10488#1 ---------------------------------------
consensus_10488#2 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||