Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1049 cluster # 1049       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1049#0 length = 1603 sequences # 2  
consensusID : consensus_1049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1603
fasta sequence 
                              [ACAACTCACGAGACGAGGCAGAGGCGCTCGCCGCGGAGGAGCCACCACCACCCACCGCCGCCGCCGCCACCGCAAACTCTCTTTCTTCTCTCGCCTGGACGAGCCGCCGGAGAGCTCGGGGGAGAGCTCTGCTGCTTGGGGAGGGGAGGCGGAGGCGATGGAGTCGATGGAGCCCAAGGACATCGACTGGAGCAGGGTGGTGTCGCGGTACGTGCGCGACGAGACCTACGAGGGCATCGAGGCCCCGCACTGGGCCGACCTCACCGATCCCGAGGCCGGCGTCGCCGCCGTCGACGACGAGGCCTGGTTCTGCCGCCCCGATTGCCGGCATCCAAAGACGGTCGAGGACTTCCTCAAGATGAGCCCCAGCCCCAAGGGCAAGCTACTGCGATCAGTGTCGGCCATGATGATGCCGTTCGGCGAGAGGGACACCAACCTTAGAGACGGCAACAACAATCTCAAGAGGCGGGGAGCCGTCGCCGGCAGCGGCATCGCCGCCACCTTCACGCCGCCCAAGCCCAAGGCTGCGGCCAAGAAGAGGTTCCAGGACGACAGCGAGAACCAGGACCCGGCATTGGCCACTCCACCTCCGCCGCCACCGGCGGCGAGTAGGCCACCGTTCGGCGCGGCACGGTGGGCCAAGAACGCCAAGGACGCCATCAAGTCCAGCGCGGAGAAGCGGCCGGGCAATGCAGAGAAGGAGGCCCTGCTCAGCAAGAACGCCGCGCCGAGGCAGCTCAAGAGCACCCTCTCGGCGAGGAACCTCTTCTCCGGGAAGGACATACTTGGCCAGATATCAGACTTCTACAATGAGCTCAAGCGGATGGCCGGCGGCAATGGCAGCCGGCCTGGGTCGGAGGCCATGGAGGAATTAAGCTCAAACCCAATAAATGAGGGCGATGTGGCCGAGAAGAAGGTCGATTGTGGCTGTGGCACTGGTGATCAGGTTCCCTCTGAAGAAGCCATCAAGGAGAAATCAAGGCAAGAAACAGCAGAAAAGAGTCCAAGCACAATGAAGGGGAAGAAGATGGGATTGAAAGTGGAAGCTGCGAAGCCCACCAGGTCCTCTGTGTTGAAGGAGGTGAAGGCCACACCACCGACTCCGCAGCGGTTCCCATCTCCCTCGACGAACCGTGTCAAGAACGTGAAAGCAGGAGGCATGTCGATGGCAAGCTCACCACTCAAGAAGCCACTGAAGGAGAAGGGGACACCTAGTAAGGATCTGGAGAACAGCAAAGATGCTAAGAGGCAACCTTTTGGTGTCAAGGACATGAACAACACCAAGGCTTGTGATGCAGAAGGCTCTAGTAGCATGTTTTGGTTCTTGAAGCCCTGCACCTTCCTAGTGGAGTAGCAGCAAAATAACGGGAAGCTTTAAAGAACTGCATTTTATGTAGTTAGAATACATTATTTCATTCTATTTGAGATACCTGTTTGGTTGATTCATTTGATGGACATTTTTGTCAGGGAAATAAACAGCAAGCTATGTATAGTTACTAGCAAAGTCATTCAAGTTTGAGAGATTCTTTCCATATGTGGGGTTCGAGATATAGCAAAATGTTGTTGTTCTTTATGCTGCCTAACTGTTTGGCCGGAGATCTGC]

[+] EMBL AK103762             [ACAACTCACGAGACGAGGCAGAGGCGCTCGCCGCGGAGGAGCCACCACCACCCACCGCCGCCGCCGCCACCGCAAACTCTCTTTCTTCTCTCGCCTGGACGAGCCGCCGGAGAGCTCGGGGGAGAGCTCTGCTGCTTGGGGAGGGGAGGCGGAGGCGATGGAGTCGATGGAGCCCAAGGACATCGACTGGAGCAGGGTGGTGTCGCGGTACGTGCGCGACGAGACCTACGAGGGCATCGAGGCCCCGCACTGGGCCGACCTCACCGATCCCGAGGCCGGCGTCGCCGCCGTCGACGACGAGGCCTGGTTCTGCCGCCCCGATTGCCGGCATCCAAAGACGGTCGAGGACTTCCTCAAGATGAGCCCCAGCCCCAAGGGCAAGCTACTGCGATCAGTGTCGGCCATGATGATGCCGTTCGGCGAGAGGGACACCAACCTTAGAGACGGCAACAACAATCTCAAGAGGCGGGGAGCCGTCGCCGGCAGCGGCATCGCCGCCACCTTCACGCCGCCCAAGCCCAAGGCTGCGGCCAAGAAGAGGTTCCAGGACGACAGCGAGAACCAGGACCCGGCATTGGCCACTCCACCTCCGCCGCCACCGGCGGCGAGTAGGCCACCGTTCGGCGCGGCACGGTGGGCCAAGAACGCCAAGGACGCCATCAAGTCCAGCGCGGAGAAGCGGCCGGGCAATGCAGAGAAGGAGGCCCTGCTCAGCAAGAACGCCGCGCCGAGGCAGCTCAAGAGCACCCTCTCGGCGAGGAACCTCTTCTCCGGGAAGGACATACTTGGCCAGATATCAGACTTCTACAATGAGCTCAAGCGGATGGCCGGCGGCAATGGCAGCCGGCCTGGGTCGGAGGCCATGGAGGAATTAAGCTCAAACCCAATAAATGAGGGCGATGTGGCCGAGAAGAAGGTCGATTGTGGCTGTGGCACTGGTGATCAGGTTCCCTCTGAAGAAGCCATCAAGGAGAAATCAAGGCAAGAAACAGCAGAAAAGAGTCCAAGCACAATGAAGGGGAAGAAGATGGGATTGAAAGTGGAAGCTGCGAAGCCCACCAGGTCCTCTGTGTTGAAGGAGGTGAAGGCCACACCACCGACTCCGCAGCGGTTCCCATCTCCCTCGACGAACCGTGTCAAGAACGTGAAAGCAGGAGGCATGTCGATGGCAAGCTCACCACTCAAGAAGCCACTGAAGGAGAAGGGGACACCTAGTAAGGATCTGGAGAACAGCAAAGATGCTAAGAGGCAACCTTTTGGTGTCAAGGACATGAACAACACCAAGGCTTGTGATGCAGAAGGCTCTAGTAGCATGTTTTGGTTCTTGAAGCCCTGCACCTTCCTAGTGGAGTAGCAGCAAAATAACGGGAAGCTTTAAAGAACTGCATTTTATGTAGTTAGAATACATTATTTCATTCTATTTGAGATACCTGTTTGGTTGATTCATTTGATGGACATTTTTGTCAGGGAAATAAACAGCAAGCTATGTATAGTTACTAGCAAAGTCATTCAAGTTTGAGAGATTCTTTCCATATGTGGGGTTCGAGATATAGCAAAATGTTGTTGTTCTTTATGCTGCCTAACTGTTTGGCCGGAGATCTGC]
[+] EMBL AK060616             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGCCACCGTTCGGCGCGGCACGGTGGGCCAAGAACGCCAAGGACGCCATCAAGTCCAGCGCGGAGAAGCGGCCGGGCAATGCAGAGAAGGAGGCCCTGCTCAGCAAGAACGCCGCGCCGAGGCAGCTCAAGAGCACCCTCTCGGCGAGGAACCTCTTCTCCGGGAAGGACATACTTGGCCAGATATCAGACTTCTACAATGAGCTCAAGCGGATGGCCGGCGGCAATGGCAGCCGGCCTGGGTCGGAGGCCATGGAGGAATTAAGCTCAAACCCAATAAATGAGGGCGATGTGGCCGAGAAGAAGGTCGATTGTGGCTGTGGCACTGGTGATCAGGTTCCCTCTGAAGAAGCCATCAAGGAGAAATCAAGGCAAGAAACAGCAGAAAAGAGTCCAAGCACAATGAAGGGGAAGAAGATGGGATTGAAAGTGGAAGCTGCGAAGCCCACCAGGTCCTCTGTGTTGAAGGAGGTGAAGGCCACACCACCGACTCCGCAGCGGTTCCCATCTCCCTCGACGAACCGTGTCAAGAACGTGAAAGCAGGAGGCATGTCGATGGCAAGCTCACCACTCAAGAAGCCACTGAAGGAGAAGGGGACACCTAGTAAGGATCTGGAGAACAGCAAAGATGCTAAGAGGCAACCTTTTGGTGTCAAGGACATGAACAACACCAAGGCTTGTGATGCAGAAGGCTCTAGTAGCATGTTTTGGTTCTTGAAGCCCTGCACCTTCCTAGTGGAGTAGCAGCAAAATAACGGGAAGCTTTAAAGAACTGCATTTTATGTAGTTAGAATACATTATTTCATTCTATTTGAGATACCTGTTTGGTTGATTCATTTGATGGACATTTTTGTCAGGGAAATAAACAGCAAGCTATGTAT                                                                                                                ]




>consensus_1049#0
ACAACTCACGAGACGAGGCAGAGGCGCTCGCCGCGGAGGAGCCACCACCACCCACCGCCG
CCGCCGCCACCGCAAACTCTCTTTCTTCTCTCGCCTGGACGAGCCGCCGGAGAGCTCGGG
GGAGAGCTCTGCTGCTTGGGGAGGGGAGGCGGAGGCGATGGAGTCGATGGAGCCCAAGGA
CATCGACTGGAGCAGGGTGGTGTCGCGGTACGTGCGCGACGAGACCTACGAGGGCATCGA
GGCCCCGCACTGGGCCGACCTCACCGATCCCGAGGCCGGCGTCGCCGCCGTCGACGACGA
GGCCTGGTTCTGCCGCCCCGATTGCCGGCATCCAAAGACGGTCGAGGACTTCCTCAAGAT
GAGCCCCAGCCCCAAGGGCAAGCTACTGCGATCAGTGTCGGCCATGATGATGCCGTTCGG
CGAGAGGGACACCAACCTTAGAGACGGCAACAACAATCTCAAGAGGCGGGGAGCCGTCGC
CGGCAGCGGCATCGCCGCCACCTTCACGCCGCCCAAGCCCAAGGCTGCGGCCAAGAAGAG
GTTCCAGGACGACAGCGAGAACCAGGACCCGGCATTGGCCACTCCACCTCCGCCGCCACC
GGCGGCGAGTAGGCCACCGTTCGGCGCGGCACGGTGGGCCAAGAACGCCAAGGACGCCAT
CAAGTCCAGCGCGGAGAAGCGGCCGGGCAATGCAGAGAAGGAGGCCCTGCTCAGCAAGAA
CGCCGCGCCGAGGCAGCTCAAGAGCACCCTCTCGGCGAGGAACCTCTTCTCCGGGAAGGA
CATACTTGGCCAGATATCAGACTTCTACAATGAGCTCAAGCGGATGGCCGGCGGCAATGG
CAGCCGGCCTGGGTCGGAGGCCATGGAGGAATTAAGCTCAAACCCAATAAATGAGGGCGA
TGTGGCCGAGAAGAAGGTCGATTGTGGCTGTGGCACTGGTGATCAGGTTCCCTCTGAAGA
AGCCATCAAGGAGAAATCAAGGCAAGAAACAGCAGAAAAGAGTCCAAGCACAATGAAGGG
GAAGAAGATGGGATTGAAAGTGGAAGCTGCGAAGCCCACCAGGTCCTCTGTGTTGAAGGA
GGTGAAGGCCACACCACCGACTCCGCAGCGGTTCCCATCTCCCTCGACGAACCGTGTCAA
GAACGTGAAAGCAGGAGGCATGTCGATGGCAAGCTCACCACTCAAGAAGCCACTGAAGGA
GAAGGGGACACCTAGTAAGGATCTGGAGAACAGCAAAGATGCTAAGAGGCAACCTTTTGG
TGTCAAGGACATGAACAACACCAAGGCTTGTGATGCAGAAGGCTCTAGTAGCATGTTTTG
GTTCTTGAAGCCCTGCACCTTCCTAGTGGAGTAGCAGCAAAATAACGGGAAGCTTTAAAG
AACTGCATTTTATGTAGTTAGAATACATTATTTCATTCTATTTGAGATACCTGTTTGGTT
GATTCATTTGATGGACATTTTTGTCAGGGAAATAAACAGCAAGCTATGTATAGTTACTAG
CAAAGTCATTCAAGTTTGAGAGATTCTTTCCATATGTGGGGTTCGAGATATAGCAAAATG
TTGTTGTTCTTTATGCTGCCTAACTGTTTGGCCGGAGATCTGC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)