cluster # 10493

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Oryza sativa
cluster # 10493 cluster # 10493 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10493#0 length = 768 sequences # 5

consensus_10493#1 length = 436 sequences # 1
consensus_10493#2 length = 222 sequences # 1

consensusID : consensus_10493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 768
fasta sequence

                              [TATCCTCTAGAGC-GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC-GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC-GTGAAC-GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC-GCGC-GCCG-GGACCGCACCTGCCGCACCAGCTGCTCCGGC-GA-GCACCCGGC-GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC-GTGAAGTTGAGCACCGCGCC-GC-GCCGCGCCAGCATC-GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG-TTGTAGTACCCCGCCGTGAGCTCCGC-GGCGTGCGA--CCGCGTCC--GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG]

[-] EMBL BI810126             [ ATCCTCTAGAGC GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCG GGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG  TGTAGTACCCCGCCGTGAGCTCCGC GG GTGCGA   CG GTCC  GGTAGTGCCAG GGATG CGG GAACTTGGGCGAGAGC                                                                                                                                                                                                                                        ]
[-] EMBL BI811404             [tggaCTCTAGAGCGGGCG CTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTA AGGTCCGACTG TCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTCTGCCGTCGAACAGCTTCTTGTTCATGCGCAGGTACTGTGAACTGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGG GAGCCCCACGCGCGCCGCTGCGCTGCCG GGACCTGACCTGCCGCACCAGCTGCTCCGGCTGATGCACCCGGCTGTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCACTGTGAAGTTGAGCACCGGGCCTGCTGCCGTGCCAGCATCTGCCGGGACGGGCGCGTACCCGTCGCGG GCCGCGTGTTTGTAGTACCCCG CGTGAGCTCCGCGGGGGTGCGAACCCGCGTCCGGGGTAGTGCCAGTGGATTGCGGCGAACTTGtgg                                                                                                                                                                                                                                              ]
[+] EMBL CB663767             [                                                         GTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA  CCGCGTCC  GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG]
[+] EMBL BU667274             [                                                                                                                                                                                                                              GGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA  CCGCGTCC  GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGG CTCGGCGGCGGCCAGGACGCGGTCGCCGT                                                                                                                                                                                 ]
[-] EMBL CB648011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGCGTGCGA  CAGCGTCC  GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCTCGGAAGACGGCCTGGGCGGCGTCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGAGGACCGCCCCTCCCCCACTC                                   ]




>consensus_10493#0
TATCCTCTAGAGCGGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAG
AGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATG
GCCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCATG
CGCAGGTACGTGAACGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAAC
GCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGCGCGC
GCCGGGACCGCACCTGCCGCACCAGCTGCTCCGGCGAGCACCCGGCGTGCTCCGGCTGCT
GCTCGTCCCGCATCTCCATGCACGTGAAGTTGAGCACCGCGCCGCGCCGCGCCAGCATCG
CCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTGTTGTAGTACCCCGCCGTGAGCTCCG
CGGCGTGCGACCGCGTCCGGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGG
CGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCA
GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC
GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC
CCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG

consensusID : consensus_10493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT]

[+] EMBL CB661665             [GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT]




>consensus_10493#1
GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCC
GCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACT
GGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGG
CGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGT
CGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACT
GCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCG
CCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGC
CAGGGAAACGCCATGT

consensusID : consensus_10493#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC]

[-] EMBL BI810158             [GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC]




>consensus_10493#2
GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAG
GTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGC
CTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGC
GGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10493#0      TATCCTCTAGAGCGGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAG 60
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      AGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATG 120
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      GCCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCATG 180
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      CGCAGGTACGTGAACGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAAC 240
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      GCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGCGCGC 300
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      GCCGGGACCGCACCTGCCGCACCAGCTGCTCCGGCGAGCACCCGGCGTGCTCCGGCTGCT 360
consensus_10493#1      ------------------------------------------------------------
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      GCTCGTCCCGCATCTCCATGCACGTGAAGTTGAGCACCGCGCCGCGCCGCGCCAGCATCG 420
consensus_10493#1      ------------------------------GAAACAGCGCCACCCGACGCGGCAACATCG 30
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      CCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTGTTGTAGTACCCCGCCGTGAGCTCCG 480
consensus_10493#1      CCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCC 90
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      CGGCGTGCGACCGCGTCCGGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGG 540
consensus_10493#1      CGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTG 150
consensus_10493#2      ------------------------------------------------------------
                                                                                   

consensus_10493#0      CGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCA 600
consensus_10493#1      CGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCA 210
consensus_10493#2      ----------------GATCCTCTAAGCGGCGCCT------CGGCTCCGGTGCC---GCC 35
                                       **    **  ****** *       ***   * ****    ** 

consensus_10493#0      GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 660
consensus_10493#1      GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 270
consensus_10493#2      TCTTCTCGAGGAACC---CGACGTAGAGGTCCGACTGCTCGGTG------------TCGC 80
                        * ** **  * ***   *** * *** ***    * *******            ** *

consensus_10493#0      GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 720
consensus_10493#1      GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 330
consensus_10493#2      AGCTGGGCAGCGCCGCCCGCTC--GCCGCCGTCGGCCATGGCC--TGACGAACGACACGA 136
                         * *   * * *** *  ***  *   * *   *   * ***   * **  ** * ** 

consensus_10493#0      CCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG------------ 768
consensus_10493#1      CCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGT 390
consensus_10493#2      ACTGGCGCCAGTTGTCG----CCGTCGA-ACAGCTTCTTGTT-CAATTGCGGCACTGTGT 190
                        *   * *** *  ***    *** **   * **  * ** * **               

consensus_10493#0      ----------------------------------------------
consensus_10493#1      ACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT 436
consensus_10493#2      ACATGTTGAAACTGCAGCCCAAGCTGGCGTGC-------------- 222