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Oryza sativa
cluster # 10497 cluster # 10497       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10497#0 length = 1259 sequences # 5  
consensus_10497#1 length = 614 sequences # 2  

consensusID : consensus_10497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1259
fasta sequence
                              [TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC-AGCA-CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA---TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA]

[+] EMBL AK106396             [TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGA                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK106169             [                                                                                                                                                                                                                                                   ATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCA        ]
[+] EMBL BQ907405             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgtGCTGGGGACCAAGCACCCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTA CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA     TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATAaaaaaaa                                               ]
[-] EMBL BE039689             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA     TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTAT                                    ]
[+] EMBL AU029453             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gt CCGGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTTCCCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA   TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCCAAAAAAAA]


>consensus_10497#0 TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGC ACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCT TGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAG GTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAA AGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAG AATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACAT TAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCG TAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAA ACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAG TTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGG TAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAA CAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA GATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTT TTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA



consensusID : consensus_10497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 614
fasta sequence
                              [ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT-TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA-TTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA]

[+] EMBL BP184442             [ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTTGTT                                                                                    ]
[+] EMBL AU083380             [                                                                                                                                                                                                                                                                                         gtTTCTGGAGTTGGTGATAGTAACCGTGGTGTTGTTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTNTCC CCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA]


>consensus_10497#1 ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTG CTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGC GTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTG GCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGG GCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATA GTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCG GTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAA AGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCG GTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTGTTTTCTGGACCC TCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTA GTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10497#0      TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGC 60
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      ACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCT 120
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      TGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAG 180
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      GTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAA 240
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      AGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAG 300
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      AATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACAT 360
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      TAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCG 420
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      TAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAA 480
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      ACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAG 540
consensus_10497#1      ------------------------------------------------------------
                                                                                   

consensus_10497#0      TTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGG 600
consensus_10497#1      --------------------------------ATGACGACGGCGACGACGACGACGACCT 28
                                                        **   * *  *        *  **   

consensus_10497#0      TAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAA 660
consensus_10497#1      TGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGG 88
                       *  *  ** * * *      **    ***        ** *** *    * *        

consensus_10497#0      CAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 720
consensus_10497#1      CGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 148
                       *    * *  **  * *  *  *  ***********************************

consensus_10497#0      TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 780
consensus_10497#1      TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 208
                       ************************************************************

consensus_10497#0      TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 840
consensus_10497#1      TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 268
                       ************************************************************

consensus_10497#0      TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 900
consensus_10497#1      TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 328
                       ************************************************************

consensus_10497#0      AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 960
consensus_10497#1      AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 388
                       ************************************************************

consensus_10497#0      CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 1020
consensus_10497#1      CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 448
                       ************************************************************

consensus_10497#0      CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 1080
consensus_10497#1      CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 508
                       ************************************************************

consensus_10497#0      GATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 1140
consensus_10497#1      GATGAAATATTTTTTTTTT-GTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 567
                       ******************* ****************************************

consensus_10497#0      CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTT 1200
consensus_10497#1      CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA------------- 614
                       *************************************      *                

consensus_10497#0      TTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA 1259
consensus_10497#1      -----------------------------------------------------------
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)