These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1259 fasta sequence [TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC-AGCA-CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA---TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA] [+] EMBL AK106396 [TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGA ] [+] EMBL AK106169 [ ATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCA ] [+] EMBL BQ907405 [ ccgtGCTGGGGACCAAGCACCCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTA CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATAaaaaaaa ] [-] EMBL BE039689 [ TGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTAT ] [+] EMBL AU029453 [ gt CCGGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTTCCCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCCAAAAAAAA] consensusID : consensus_10497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT-TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA-TTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA] [+] EMBL BP184442 [ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTTGTT ] [+] EMBL AU083380 [ gtTTCTGGAGTTGGTGATAGTAACCGTGGTGTTGTTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTNTCC CCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10497#0 TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGC 60 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 ACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCT 120 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 TGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAG 180 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 GTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAA 240 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 AGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAG 300 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 AATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACAT 360 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 TAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCG 420 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 TAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAA 480 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 ACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAG 540 consensus_10497#1 ------------------------------------------------------------ consensus_10497#0 TTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGG 600 consensus_10497#1 --------------------------------ATGACGACGGCGACGACGACGACGACCT 28 ** * * * * ** consensus_10497#0 TAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAA 660 consensus_10497#1 TGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGG 88 * * ** * * * ** *** ** *** * * * consensus_10497#0 CAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 720 consensus_10497#1 CGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 148 * * * ** * * * * *********************************** consensus_10497#0 TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 780 consensus_10497#1 TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 208 ************************************************************ consensus_10497#0 TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 840 consensus_10497#1 TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 268 ************************************************************ consensus_10497#0 TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 900 consensus_10497#1 TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 328 ************************************************************ consensus_10497#0 AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 960 consensus_10497#1 AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 388 ************************************************************ consensus_10497#0 CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 1020 consensus_10497#1 CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 448 ************************************************************ consensus_10497#0 CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 1080 consensus_10497#1 CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 508 ************************************************************ consensus_10497#0 GATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 1140 consensus_10497#1 GATGAAATATTTTTTTTTT-GTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 567 ******************* **************************************** consensus_10497#0 CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTT 1200 consensus_10497#1 CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA------------- 614 ************************************* * consensus_10497#0 TTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA 1259 consensus_10497#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||