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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 981 fasta sequence
[AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC-AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT-GGCCAGACGCTCATCAGGCAGGACTTCAAGA-CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC-TCGGCGCGAGCTTC-TTTGATGCAGATC-TGACAGGTGCTGATCTCTCTGA-TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC-TTGCCACAGGAAA-CACGACGTTCAAAGGTTCCAACATATATGGA-GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT-GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK104051 [AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGC ]
[+] EMBL AK068113 [AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGAGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTAAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAAC ]
[+] EMBL AK058909 [ CCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTACATA ]
[+] EMBL OSS15080A [ ACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCTACCCTCCGCCACGACGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGNCGGCGCCG CGCNNTCGTCGCGCCCTCGCTCCTCGTCGNCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGCAAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGGCCAGACGGTCATCAGGCAGGACTTCAAGACCGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA TTGCTTCGGCGNGAGNTTCTTTTGATTGAGGTCTTGACAAGTGNTGATCTCTCTGATTGTTG TCTT ]
[+] EMBL AU078156 [ TCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCACTTTGCCACAGGAAACCACGACGTTCAAAGGTTCCAACATATATGGANGCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCTCGATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCAaaaa ]
[+] EMBL CF300817 [ GAGTAGTACACGATCATATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CTGGCATTCAAGGGAGGAGGCCCGTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGACGCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCAAAGAAAAGCATTAGCGATAGCAAGCTAATTGAAATGCTACTACATTCCACATTGACCATTGCATTGTTCAGAAAGCCTGGATTGTTTTTTCCTTTTTACTGATTAGACCAGTAATAAATTGATAGCAATTTGGCATTGGCATCATAGCAATATTGAACAAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTCATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT]
[+] EMBL CF310364 [CTGGCATTCAAGGGAGGAGGCCCGTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGACGCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCAAAGAAAAGCATTAGCGATAGCAAGCTAATTGAAATGCTACTACATTCCACATTGACCATTGCATTGTTCAGAAAGCCTGGATTGTTTTTTCCTTTTTACTGATTAGACCAGTAATAAATTGATAGCAATTTGGCATTGGCATCATAGCAATATTGAACAAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTCATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10498#0 AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCAT 60
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 GGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCC 120
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 GGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGC 180
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 GCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCC 240
consensus_10498#1 -------------------------------------CTGGCATTCAAGGGAGGAGGCCC 23
***********************
consensus_10498#0 GTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGAC 300
consensus_10498#1 GTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGAC 83
************************************************************
consensus_10498#0 GCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA 360
consensus_10498#1 GCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA 143
************************************************************
consensus_10498#0 GCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGA 420
consensus_10498#1 GCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGA 203
************************************************************
consensus_10498#0 TCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAA 480
consensus_10498#1 TCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCA 263
******************************************* *** * *** *
consensus_10498#0 CTTGGAAGGGGCACTTGCCACAGGAAACACGACGTTCAAAGGTTCCAACATATATGGAGC 540
consensus_10498#1 ---AAGAAAAGCATTAGCGATAGCAAGCT---AATTGAAATGCTACTACAT-TCCACATT 316
* *** * ** * ** ** * ** *** * * * **** * *
consensus_10498#0 AGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCTGA 600
consensus_10498#1 GACCATTGCAT-TGTTC-------AGAAAGCCTG---GATTGTTTTTTCCTTTTTACTGA 365
** ** ***** *** * * ** * * * * ** ****
consensus_10498#0 TGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAAC 660
consensus_10498#1 TTAGACCAGTA-ATAAATTGATAGCAATTTGGCATTGGC---ATCATAGCAATATTGAAC 421
* * ** ** * * ** * * * * * * * *** *****
consensus_10498#0 AATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTG 720
consensus_10498#1 AAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTC 481
** * * * * * ** * * * ** * ** *
consensus_10498#0 AATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAG 780
consensus_10498#1 ATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT--- 538
* * * * * ** ** * ** *** * ** * ** *
consensus_10498#0 AGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTC 840
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 AATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATA 900
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 CAATAGTTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTA 960
consensus_10498#1 ------------------------------------------------------------
consensus_10498#0 AAAAAAAAAAAAAAAAAAAAA 981
consensus_10498#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||