These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 655 fasta sequence [TAATGCTGAAGAACTTGCCAACACTATAGGACAGACA-ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA-TTTCAGACCGC-GCTTAACCTGGGAAGACA-TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA-CTGAGGCACCGTCACTCGCCCTG-AACCCCGCTCTGTCCCTAACAAGAGATGATC-GACGCCGCCTGCGCAC-ATACATTGAAGCCGTTAACG-CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC-GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA] [+] EMBL BQ909121 [TATTGCTGAAGAACTTGCCAACACTATAGGACAGACACATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACACTGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCC AACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTACCTTCTGGGCTTTTACACTGCAAAAAAAAAAAAA ] [+] EMBL AK058854 [ tATGCTGAAGAACTTGCCAACACTATAGGACAGACA GTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGTTGGCAGCTGAAGGCCC GACCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCT ] [-] EMBL CB631446 [ ATGCTGAAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTGACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCTTTAAAGGTTTGTTCATTAAAAT ] [+] EMBL AA750577 [ AAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAAACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTCCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCCCTTCCTCCTGA CTGCGGCACCGTCACTTGACCTGAAACCCTGGTCTGTCCCT ] [+] EMBL BI812266 [ TCATAGTTTCAGACCGCGGCTTAACCT GGAAGACA TGGTGGTCTTGA GAGATGATGGGAAAATCAGCATCTGCCATGGT CTGTACTCGAA GCAGTATCCAT CTGCGCTTTCTCCTGAGCTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCGTACAAGAGATGATCGGAC CCGCCTGCGCACAATACATTGAA CCGTTAACGTCTAGGCTCGTCCCGTTTCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCCAGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAA ] [-] EMBL CF326510 [ TG AACCCCGTTTTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG TTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCCCCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAAATATGTCATGTTTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGAAAGACAGCTGAAGGCCC GCCCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA] consensusID : consensus_10499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH] [+] EMBL BE229584 [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10499#0 -------------TAATGCTGAAGAA-CTTGCCAACACTATAGGACAGACAATTGATGCT 46 consensus_10499#1 CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCT 60 * ** *** ************************ ******** consensus_10499#0 ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 106 consensus_10499#1 ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 120 ************************************************************ consensus_10499#0 GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 166 consensus_10499#1 GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 180 ************************************************************ consensus_10499#0 GTATCCATGCTGCGCTTTCTCCTGACTG-AGGCACCGTCACTCGCCCTGAACCCCGCTCT 225 consensus_10499#1 GTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCT 240 *************************** ************************** **** consensus_10499#0 GTCCCTAACAAGAGATGATCGACGCCGCCTGCGCACATACATTGAAGCCGTTAACGCTAG 285 consensus_10499#1 GTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAG 300 ***************** ** *********************** ************** consensus_10499#0 G-CTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATC 344 consensus_10499#1 GTCTCCCCCCGTTAH--------------------------------------------- 315 * *** ****** consensus_10499#0 CTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGT 404 consensus_10499#1 ------------------------------------------------------------ consensus_10499#0 GCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTA 464 consensus_10499#1 ------------------------------------------------------------ consensus_10499#0 ACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCT 524 consensus_10499#1 ------------------------------------------------------------ consensus_10499#0 GAAGGCCCGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGT 584 consensus_10499#1 ------------------------------------------------------------ consensus_10499#0 TCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 644 consensus_10499#1 ------------------------------------------------------------ consensus_10499#0 ACTCGAGACTA 655 consensus_10499#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||