Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10499 cluster # 10499       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10499#0 length = 655 sequences # 6  
consensus_10499#1 length = 315 sequences # 1  

consensusID : consensus_10499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 655
fasta sequence
                              [TAATGCTGAAGAACTTGCCAACACTATAGGACAGACA-ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA-TTTCAGACCGC-GCTTAACCTGGGAAGACA-TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA-CTGAGGCACCGTCACTCGCCCTG-AACCCCGCTCTGTCCCTAACAAGAGATGATC-GACGCCGCCTGCGCAC-ATACATTGAAGCCGTTAACG-CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC-GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]

[+] EMBL BQ909121             [TATTGCTGAAGAACTTGCCAACACTATAGGACAGACACATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACACTGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCC AACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTACCTTCTGGGCTTTTACACTGCAAAAAAAAAAAAA                               ]
[+] EMBL AK058854             [ tATGCTGAAGAACTTGCCAACACTATAGGACAGACA GTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGTTGGCAGCTGAAGGCCC GACCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCT                                                      ]
[-] EMBL CB631446             [  ATGCTGAAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTGACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCTTTAAAGGTTTGTTCATTAAAAT                                                             ]
[+] EMBL AA750577             [        AAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAAACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTCCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCCCTTCCTCCTGA CTGCGGCACCGTCACTTGACCTGAAACCCTGGTCTGTCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI812266             [                                                                        TCATAGTTTCAGACCGCGGCTTAACCT GGAAGACA TGGTGGTCTTGA GAGATGATGGGAAAATCAGCATCTGCCATGGT CTGTACTCGAA GCAGTATCCAT CTGCGCTTTCTCCTGAGCTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCGTACAAGAGATGATCGGAC CCGCCTGCGCACAATACATTGAA CCGTTAACGTCTAGGCTCGTCCCGTTTCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCCAGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAA                                  ]
[-] EMBL CF326510             [                                                                                                                                                                                                                         TG AACCCCGTTTTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG TTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCCCCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAAATATGTCATGTTTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGAAAGACAGCTGAAGGCCC GCCCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]


>consensus_10499#0 TAATGCTGAAGAACTTGCCAACACTATAGGACAGACAATTGATGCTACAGAAATGCCAGA TGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGA GATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCG CTTTCTCCTGACTGAGGCACCGTCACTCGCCCTGAACCCCGCTCTGTCCCTAACAAGAGA TGATCGACGCCGCCTGCGCACATACATTGAAGCCGTTAACGCTAGGCTCGTCCCGTTGCA ATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGT TGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGA AGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTG CTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCCGACCAAGG TCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGC TTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA



consensusID : consensus_10499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence
                              [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH]

[+] EMBL BE229584             [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH]


>consensus_10499#1 CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCT ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA GTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCT GTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAG GTCTCCCCCCGTTAH



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10499#0      -------------TAATGCTGAAGAA-CTTGCCAACACTATAGGACAGACAATTGATGCT 46
consensus_10499#1      CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCT 60
                                    *   **    *** ************************ ********

consensus_10499#0      ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 106
consensus_10499#1      ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 120
                       ************************************************************

consensus_10499#0      GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 166
consensus_10499#1      GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 180
                       ************************************************************

consensus_10499#0      GTATCCATGCTGCGCTTTCTCCTGACTG-AGGCACCGTCACTCGCCCTGAACCCCGCTCT 225
consensus_10499#1      GTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCT 240
                       ***************************  ************************** ****

consensus_10499#0      GTCCCTAACAAGAGATGATCGACGCCGCCTGCGCACATACATTGAAGCCGTTAACGCTAG 285
consensus_10499#1      GTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAG 300
                       *****************  ** *********************** **************

consensus_10499#0      G-CTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATC 344
consensus_10499#1      GTCTCCCCCCGTTAH--------------------------------------------- 315
                       * ***  ******                                               

consensus_10499#0      CTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGT 404
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      GCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTA 464
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      ACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCT 524
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      GAAGGCCCGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGT 584
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      TCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 644
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      ACTCGAGACTA 655
consensus_10499#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)