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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence
[TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGTTTTTCAAATAGTTTTTGGGTGAAAAAAAAGA]
[+] EMBL AK106237 [TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCATCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGC ]
[+] EMBL CB643071 [ CCAGCCTTCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCCACACCAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGGGCC ]
[+] EMBL CB660966 [ AGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTAC ]
[+] EMBL AU092188 [ GGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTANTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGG ]
[-] EMBL CB660967 [ GGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGTTTTTCAAATAGTTTTTGGGTGAAAAAAAAGA]
[-] EMBL CB643072 [ ccCGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACTTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTGTTTCCCCAGTTCAATATATGTTTTTCAAATAcaaaaaaag ]
consensusID : consensus_10500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCCGGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCACCTGCGCACATCAACACCCTNCCCTGANCGCGCACCCCCTCTTCCGGCCGAACCGACGCTCGCGAAACGCCGGCTGANCCATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATNACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAANCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGTTTTTCAAATAAAAAAAAAAAAAAAAAA]
[+] EMBL C96822 [TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCCGGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCACCTGCGCACATCAACACCCTNCCCTGANCGCGCACCCCCTCTTCCGGCCGAACCGACGCTCGCGAAACGCCGGCTGANCCATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATNACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAANCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGTTTTTCAAATAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10500#0 TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGC 60
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 AGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCG 120
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 ATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCC 180
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 GGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCC 240
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 GCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATC 300
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 AGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTT 360
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTT 420
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGT 480
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAG 540
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTC 600
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 TTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGA 660
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGC 720
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 GTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGA 780
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCT 840
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAAT 900
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCC 960
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 GCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGG 1020
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 CGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCT 1080
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 GGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGC 1140
consensus_10500#1 ------------------------------------------------------------
consensus_10500#0 AGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCC 1200
consensus_10500#1 --------------TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCC 46
** ***** ** * **** ******** * ***** * ****
consensus_10500#0 GGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGC 1260
consensus_10500#1 GGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCAC-CTGCGCACATCAACACCCTN-C 104
**************** ******************** ******************* *
consensus_10500#0 GCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCC 1320
consensus_10500#1 CCTGANCGCGCACCCC-CTCTTCCGGCCGAACCGACGCTCGCGAAAC-GCCGGCTGANCC 162
**** ***** * ** **** ******* *** ********** * ********* **
consensus_10500#0 ATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATC 1380
consensus_10500#1 ATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATN 222
**************************** ******************************
consensus_10500#0 ACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAA 1440
consensus_10500#1 ACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAA 282
***************** ********************************* ********
consensus_10500#0 GCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGT 1500
consensus_10500#1 NCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGT 342
** ******************************************** **********
consensus_10500#0 TTTTCAAATAGTTTTTGGGTGAAAAAAAAGA 1531
consensus_10500#1 TTTTCAAATAAA----AAAAAAAAAAAAAAA 369
********** ******** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||